data_4PYX
#
_model_server_result.job_id            kl3WOVijWQNLkRkQNnOC-A 
_model_server_result.datetime_utc      '2024-11-25 13:46:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pyx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    4PYX 
#
_exptl.entry_id    4PYX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              412.491 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-(cyclooctylamino)-3,5,6-trifluoro-4-[(2-hydroxyethyl)sulfanyl]benzenesulfonamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.07 
_cell.angle_gamma         90 
_cell.entry_id            4PYX 
_cell.length_a            42.022 
_cell.length_b            41.143 
_cell.length_c            71.519 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PYX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc4 B ZN ZN . A ZN 301 1_555 E N11 V90 . A V90 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
#
_chem_comp.formula           'C16 H23 F3 N2 O3 S2' 
_chem_comp.formula_weight    412.491 
_chem_comp.id                V90 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-(cyclooctylamino)-3,5,6-trifluoro-4-[(2-hydroxyethyl)sulfanyl]benzenesulfonamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C22 C23 V90 sing 392 n n 
C22 C21 V90 sing 393 n n 
C23 C24 V90 sing 394 n n 
C24 C25 V90 sing 395 n n 
O15 C14 V90 sing 396 n n 
C21 C20 V90 sing 397 n n 
C14 C13 V90 sing 398 n n 
C25 C26 V90 sing 399 n n 
C20 C19 V90 sing 400 n n 
C13 S12 V90 sing 401 n n 
C26 C19 V90 sing 402 n n 
C19 N7 V90 sing 403 n n 
F18 C5 V90 sing 404 n n 
S12 C6 V90 sing 405 n n 
C5 C6 V90 doub 406 n y 
C5 C4 V90 sing 407 n y 
N7 C4 V90 sing 408 n n 
C6 C1 V90 sing 409 n y 
C4 C3 V90 doub 410 n y 
C1 F17 V90 sing 411 n n 
C1 C2 V90 doub 412 n y 
C3 C2 V90 sing 413 n y 
C3 S8 V90 sing 414 n n 
N11 S8 V90 sing 415 n n 
C2 F16 V90 sing 416 n n 
O10 S8 V90 doub 417 n n 
S8 O9 V90 doub 418 n n 
C13 H1 V90 sing 419 n n 
C13 H2 V90 sing 420 n n 
C14 H3 V90 sing 421 n n 
C14 H4 V90 sing 422 n n 
O15 H5 V90 sing 423 n n 
N11 H6 V90 sing 424 n n 
N11 H7 V90 sing 425 n n 
N7 H8 V90 sing 426 n n 
C19 H9 V90 sing 427 n n 
C26 H10 V90 sing 428 n n 
C26 H11 V90 sing 429 n n 
C25 H12 V90 sing 430 n n 
C25 H13 V90 sing 431 n n 
C24 H14 V90 sing 432 n n 
C24 H15 V90 sing 433 n n 
C23 H16 V90 sing 434 n n 
C23 H17 V90 sing 435 n n 
C22 H18 V90 sing 436 n n 
C22 H19 V90 sing 437 n n 
C21 H20 V90 sing 438 n n 
C21 H21 V90 sing 439 n n 
C20 H22 V90 sing 440 n n 
C20 H23 V90 sing 441 n n 
#
_atom_sites.entry_id                     4PYX 
_atom_sites.fract_transf_matrix[1][1]    0.023797 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005965 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024306 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014415 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 1 ZN ZN . 
C 3 DMS A 1 302 1 DMS DMS . 
D 4 MES A 1 303 1 MES MES . 
E 5 V90 A 1 304 1 V90 V90 . 
F 6 HOH A 1 401 1 HOH HOH . 
F 6 HOH A 2 402 2 HOH HOH . 
F 6 HOH A 3 403 3 HOH HOH . 
F 6 HOH A 4 404 4 HOH HOH . 
F 6 HOH A 5 405 5 HOH HOH . 
F 6 HOH A 6 406 6 HOH HOH . 
F 6 HOH A 7 407 7 HOH HOH . 
F 6 HOH A 8 408 8 HOH HOH . 
F 6 HOH A 9 409 9 HOH HOH . 
F 6 HOH A 10 410 10 HOH HOH . 
F 6 HOH A 11 411 11 HOH HOH . 
F 6 HOH A 12 412 12 HOH HOH . 
F 6 HOH A 13 413 13 HOH HOH . 
F 6 HOH A 14 414 14 HOH HOH . 
F 6 HOH A 15 415 15 HOH HOH . 
F 6 HOH A 16 416 16 HOH HOH . 
F 6 HOH A 17 417 17 HOH HOH . 
F 6 HOH A 18 418 18 HOH HOH . 
F 6 HOH A 19 419 19 HOH HOH . 
F 6 HOH A 20 420 20 HOH HOH . 
F 6 HOH A 21 421 21 HOH HOH . 
F 6 HOH A 22 422 22 HOH HOH . 
F 6 HOH A 23 423 23 HOH HOH . 
F 6 HOH A 24 424 24 HOH HOH . 
F 6 HOH A 25 425 25 HOH HOH . 
F 6 HOH A 26 426 26 HOH HOH . 
F 6 HOH A 27 427 27 HOH HOH . 
F 6 HOH A 28 428 28 HOH HOH . 
F 6 HOH A 29 429 29 HOH HOH . 
F 6 HOH A 30 430 30 HOH HOH . 
F 6 HOH A 31 431 31 HOH HOH . 
F 6 HOH A 32 432 32 HOH HOH . 
F 6 HOH A 33 433 33 HOH HOH . 
F 6 HOH A 34 434 34 HOH HOH . 
F 6 HOH A 35 435 35 HOH HOH . 
F 6 HOH A 36 436 36 HOH HOH . 
F 6 HOH A 37 437 37 HOH HOH . 
F 6 HOH A 38 438 38 HOH HOH . 
F 6 HOH A 39 439 39 HOH HOH . 
F 6 HOH A 40 440 40 HOH HOH . 
F 6 HOH A 41 441 41 HOH HOH . 
F 6 HOH A 42 442 42 HOH HOH . 
F 6 HOH A 43 443 43 HOH HOH . 
F 6 HOH A 44 444 44 HOH HOH . 
F 6 HOH A 45 445 45 HOH HOH . 
F 6 HOH A 46 446 46 HOH HOH . 
F 6 HOH A 47 447 47 HOH HOH . 
F 6 HOH A 48 448 48 HOH HOH . 
F 6 HOH A 49 449 49 HOH HOH . 
F 6 HOH A 50 450 50 HOH HOH . 
F 6 HOH A 51 451 51 HOH HOH . 
F 6 HOH A 52 452 52 HOH HOH . 
F 6 HOH A 53 453 53 HOH HOH . 
F 6 HOH A 54 454 54 HOH HOH . 
F 6 HOH A 55 455 55 HOH HOH . 
F 6 HOH A 56 456 56 HOH HOH . 
F 6 HOH A 57 457 57 HOH HOH . 
F 6 HOH A 58 458 58 HOH HOH . 
F 6 HOH A 59 459 59 HOH HOH . 
F 6 HOH A 60 460 60 HOH HOH . 
F 6 HOH A 61 461 61 HOH HOH . 
F 6 HOH A 62 462 62 HOH HOH . 
F 6 HOH A 63 463 63 HOH HOH . 
F 6 HOH A 64 464 64 HOH HOH . 
F 6 HOH A 65 465 65 HOH HOH . 
F 6 HOH A 66 466 66 HOH HOH . 
F 6 HOH A 67 467 67 HOH HOH . 
F 6 HOH A 68 468 68 HOH HOH . 
F 6 HOH A 69 469 69 HOH HOH . 
F 6 HOH A 70 470 70 HOH HOH . 
F 6 HOH A 71 471 71 HOH HOH . 
F 6 HOH A 72 472 72 HOH HOH . 
F 6 HOH A 73 473 73 HOH HOH . 
F 6 HOH A 74 474 74 HOH HOH . 
F 6 HOH A 75 475 75 HOH HOH . 
F 6 HOH A 76 476 76 HOH HOH . 
F 6 HOH A 77 477 77 HOH HOH . 
F 6 HOH A 78 478 78 HOH HOH . 
F 6 HOH A 79 479 79 HOH HOH . 
F 6 HOH A 80 480 80 HOH HOH . 
F 6 HOH A 81 481 81 HOH HOH . 
F 6 HOH A 82 482 82 HOH HOH . 
F 6 HOH A 83 483 83 HOH HOH . 
F 6 HOH A 84 484 84 HOH HOH . 
F 6 HOH A 85 485 85 HOH HOH . 
F 6 HOH A 86 486 86 HOH HOH . 
F 6 HOH A 87 487 87 HOH HOH . 
F 6 HOH A 88 488 88 HOH HOH . 
F 6 HOH A 89 489 89 HOH HOH . 
F 6 HOH A 90 490 90 HOH HOH . 
F 6 HOH A 91 491 91 HOH HOH . 
F 6 HOH A 92 492 92 HOH HOH . 
F 6 HOH A 93 493 93 HOH HOH . 
F 6 HOH A 94 494 94 HOH HOH . 
F 6 HOH A 95 495 95 HOH HOH . 
F 6 HOH A 96 496 96 HOH HOH . 
F 6 HOH A 97 497 97 HOH HOH . 
F 6 HOH A 98 498 98 HOH HOH . 
F 6 HOH A 99 499 99 HOH HOH . 
F 6 HOH A 100 500 100 HOH HOH . 
F 6 HOH A 101 501 101 HOH HOH . 
F 6 HOH A 102 502 102 HOH HOH . 
F 6 HOH A 103 503 103 HOH HOH . 
F 6 HOH A 104 504 104 HOH HOH . 
F 6 HOH A 105 505 105 HOH HOH . 
F 6 HOH A 106 506 106 HOH HOH . 
F 6 HOH A 107 507 107 HOH HOH . 
F 6 HOH A 108 508 108 HOH HOH . 
F 6 HOH A 109 509 109 HOH HOH . 
F 6 HOH A 110 510 110 HOH HOH . 
F 6 HOH A 111 511 111 HOH HOH . 
F 6 HOH A 112 512 112 HOH HOH . 
F 6 HOH A 113 513 113 HOH HOH . 
F 6 HOH A 114 514 114 HOH HOH . 
F 6 HOH A 115 515 115 HOH HOH . 
F 6 HOH A 116 516 116 HOH HOH . 
F 6 HOH A 117 517 117 HOH HOH . 
F 6 HOH A 118 518 118 HOH HOH . 
F 6 HOH A 119 519 119 HOH HOH . 
F 6 HOH A 120 520 120 HOH HOH . 
F 6 HOH A 121 521 121 HOH HOH . 
F 6 HOH A 122 522 122 HOH HOH . 
F 6 HOH A 123 523 123 HOH HOH . 
F 6 HOH A 124 524 124 HOH HOH . 
F 6 HOH A 125 525 125 HOH HOH . 
F 6 HOH A 126 526 126 HOH HOH . 
F 6 HOH A 127 527 127 HOH HOH . 
F 6 HOH A 128 528 128 HOH HOH . 
F 6 HOH A 129 529 129 HOH HOH . 
F 6 HOH A 130 530 130 HOH HOH . 
F 6 HOH A 131 531 131 HOH HOH . 
F 6 HOH A 132 532 132 HOH HOH . 
F 6 HOH A 133 533 133 HOH HOH . 
F 6 HOH A 134 534 134 HOH HOH . 
F 6 HOH A 135 535 135 HOH HOH . 
F 6 HOH A 136 536 136 HOH HOH . 
F 6 HOH A 137 537 137 HOH HOH . 
F 6 HOH A 138 538 138 HOH HOH . 
F 6 HOH A 139 539 139 HOH HOH . 
F 6 HOH A 140 540 140 HOH HOH . 
F 6 HOH A 141 541 141 HOH HOH . 
F 6 HOH A 142 542 142 HOH HOH . 
F 6 HOH A 143 543 143 HOH HOH . 
F 6 HOH A 144 544 144 HOH HOH . 
F 6 HOH A 145 545 145 HOH HOH . 
F 6 HOH A 146 546 146 HOH HOH . 
F 6 HOH A 147 547 147 HOH HOH . 
F 6 HOH A 148 548 148 HOH HOH . 
F 6 HOH A 149 549 149 HOH HOH . 
F 6 HOH A 150 550 150 HOH HOH . 
F 6 HOH A 151 551 151 HOH HOH . 
F 6 HOH A 152 552 152 HOH HOH . 
F 6 HOH A 153 553 153 HOH HOH . 
F 6 HOH A 154 554 154 HOH HOH . 
F 6 HOH A 155 555 155 HOH HOH . 
F 6 HOH A 156 556 156 HOH HOH . 
F 6 HOH A 157 557 157 HOH HOH . 
F 6 HOH A 158 558 158 HOH HOH . 
F 6 HOH A 159 559 159 HOH HOH . 
F 6 HOH A 160 560 160 HOH HOH . 
F 6 HOH A 161 561 161 HOH HOH . 
F 6 HOH A 162 562 162 HOH HOH . 
F 6 HOH A 163 563 163 HOH HOH . 
F 6 HOH A 164 564 164 HOH HOH . 
F 6 HOH A 165 565 165 HOH HOH . 
F 6 HOH A 166 566 166 HOH HOH . 
F 6 HOH A 167 567 167 HOH HOH . 
F 6 HOH A 168 568 168 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 F F18 V90 . . . E 5 -2.912 3.208 13.242 1 13.42 ? F18 V90 304 A 1 
HETATM 2 C C5 V90 . . . E 5 -3.84 3.286 14.173 1 15.86 ? C5 V90 304 A 1 
HETATM 3 C C6 V90 . . . E 5 -4.351 4.511 14.55 1 17.43 ? C6 V90 304 A 1 
HETATM 4 S S12 V90 . . . E 5 -3.723 6.023 13.82 1 21.08 ? S12 V90 304 A 1 
HETATM 5 C C13 V90 . . . E 5 -4.203 5.818 12.049 1 30.12 ? C13 V90 304 A 1 
HETATM 6 C C14 V90 . . . E 5 -5.662 6.245 11.714 1 35.86 ? C14 V90 304 A 1 
HETATM 7 O O15 V90 . . . E 5 -6.026 5.862 10.39 1 43.36 ? O15 V90 304 A 1 
HETATM 8 C C1 V90 . . . E 5 -5.336 4.563 15.521 1 15.88 ? C1 V90 304 A 1 
HETATM 9 F F17 V90 . . . E 5 -5.892 5.715 15.904 1 18.22 ? F17 V90 304 A 1 
HETATM 10 C C4 V90 . . . E 5 -4.311 2.074 14.732 1 13.93 ? C4 V90 304 A 1 
HETATM 11 C C3 V90 . . . E 5 -5.236 2.166 15.774 1 13.49 ? C3 V90 304 A 1 
HETATM 12 S S8 V90 . . . E 5 -5.85 0.756 16.665 1 11.93 ? S8 V90 304 A 1 
HETATM 13 O O10 V90 . . . E 5 -7.339 0.82 16.566 1 10.05 ? O10 V90 304 A 1 
HETATM 14 N N11 V90 . . . E 5 -5.12 -0.668 16.11 1 10.43 ? N11 V90 304 A 1 
HETATM 15 O O9 V90 . . . E 5 -5.427 0.984 18.057 1 10.56 ? O9 V90 304 A 1 
HETATM 16 C C2 V90 . . . E 5 -5.779 3.394 16.141 1 15.45 ? C2 V90 304 A 1 
HETATM 17 F F16 V90 . . . E 5 -6.679 3.456 17.093 1 16.18 ? F16 V90 304 A 1 
HETATM 18 N N7 V90 . . . E 5 -3.744 0.846 14.302 1 14.46 ? N7 V90 304 A 1 
HETATM 19 C C19 V90 . . . E 5 -3.6 0.536 12.898 1 15.35 ? C19 V90 304 A 1 
HETATM 20 C C26 V90 . . . E 5 -3.816 -1.003 12.833 1 16.11 ? C26 V90 304 A 1 
HETATM 21 C C25 V90 . . . E 5 -3.032 -1.714 11.725 1 18.96 ? C25 V90 304 A 1 
HETATM 22 C C24 V90 . . . E 5 -2.975 -1.209 10.299 1 17.47 ? C24 V90 304 A 1 
HETATM 23 C C23 V90 . . . E 5 -2.492 0.225 9.954 1 18.08 ? C23 V90 304 A 1 
HETATM 24 C C22 V90 . . . E 5 -3.762 0.982 9.662 1 16.7 ? C22 V90 304 A 1 
HETATM 25 C C21 V90 . . . E 5 -4.219 1.93 10.763 1 16.88 ? C21 V90 304 A 1 
HETATM 26 C C20 V90 . . . E 5 -4.71 1.208 12.031 1 16.03 ? C20 V90 304 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           26 
#