data_4PZ2 # _model_server_result.job_id s6txxds04mTi7ONCAgNt8A _model_server_result.datetime_utc '2024-11-23 02:57:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pz2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":603}' # _entry.id 4PZ2 # _exptl.entry_id 4PZ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PZ2 _cell.length_a 233.88 _cell.length_b 233.88 _cell.length_c 82.9 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PZ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N ? 5 J N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 70 A THR 55 1_555 E NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc2 A O ARG 71 A ARG 56 1_555 E NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc3 A OD1 ASP 139 A ASP 124 1_555 E NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc4 A O ASP 139 A ASP 124 1_555 E NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc5 A O GLN 226 A GLN 211 1_555 E NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc6 E NA NA . A NA 601 1_555 V O HOH . A HOH 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.006 ? metalc ? metalc7 B OG1 THR 70 B THR 55 1_555 K NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.138 ? metalc ? metalc8 B O ARG 71 B ARG 56 1_555 K NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc9 B O ASP 139 B ASP 124 1_555 K NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc10 B OD1 ASP 139 B ASP 124 1_555 K NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc11 B O GLN 226 B GLN 211 1_555 K NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc12 C OG1 THR 70 C THR 55 1_555 M NA NA . C NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.98 ? metalc ? metalc13 C O ARG 71 C ARG 56 1_555 M NA NA . C NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc14 C O ASP 139 C ASP 124 1_555 M NA NA . C NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc15 C OD1 ASP 139 C ASP 124 1_555 M NA NA . C NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc16 C O GLN 226 C GLN 211 1_555 M NA NA . C NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc17 D OG1 THR 70 D THR 55 1_555 S NA NA . D NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.209 ? metalc ? metalc18 D O ARG 71 D ARG 56 1_555 S NA NA . D NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc19 D O ASP 139 D ASP 124 1_555 S NA NA . D NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc20 D OD1 ASP 139 D ASP 124 1_555 S NA NA . D NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc21 D O GLN 226 D GLN 211 1_555 S NA NA . D NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4PZ2 _atom_sites.fract_transf_matrix[1][1] 0.004276 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004276 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012063 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NA A 1 601 601 NA NA . F 3 PEG A 1 602 602 PEG PEG . G 4 NAD A 1 603 603 NAD NAD . H 5 EDO A 1 604 604 EDO EDO . I 5 EDO A 1 605 605 EDO EDO . J 5 EDO A 1 606 602 EDO EDO . K 2 NA B 1 601 601 NA NA . L 4 NAD B 1 602 602 NAD NAD . M 2 NA C 1 601 601 NA NA . N 5 EDO C 1 602 603 EDO EDO . O 5 EDO C 1 603 604 EDO EDO . P 5 EDO C 1 604 605 EDO EDO . Q 5 EDO C 1 605 606 EDO EDO . R 4 NAD C 1 606 607 NAD NAD . S 2 NA D 1 601 601 NA NA . T 5 EDO D 1 602 602 EDO EDO . U 4 NAD D 1 603 603 NAD NAD . V 6 HOH A 1 701 701 HOH HOH . V 6 HOH A 2 702 702 HOH HOH . V 6 HOH A 3 703 703 HOH HOH . V 6 HOH A 4 704 704 HOH HOH . V 6 HOH A 5 705 705 HOH HOH . V 6 HOH A 6 706 706 HOH HOH . V 6 HOH A 7 707 707 HOH HOH . V 6 HOH A 8 708 708 HOH HOH . V 6 HOH A 9 709 709 HOH HOH . V 6 HOH A 10 710 710 HOH HOH . V 6 HOH A 11 711 711 HOH HOH . V 6 HOH A 12 712 712 HOH HOH . V 6 HOH A 13 713 713 HOH HOH . V 6 HOH A 14 714 714 HOH HOH . V 6 HOH A 15 715 715 HOH HOH . V 6 HOH A 16 716 716 HOH HOH . V 6 HOH A 17 717 717 HOH HOH . V 6 HOH A 18 718 718 HOH HOH . V 6 HOH A 19 719 719 HOH HOH . V 6 HOH A 20 720 720 HOH HOH . V 6 HOH A 21 721 721 HOH HOH . V 6 HOH A 22 722 722 HOH HOH . V 6 HOH A 23 723 723 HOH HOH . V 6 HOH A 24 724 724 HOH HOH . V 6 HOH A 25 725 718 HOH HOH . W 6 HOH B 1 701 701 HOH HOH . W 6 HOH B 2 702 702 HOH HOH . W 6 HOH B 3 703 703 HOH HOH . W 6 HOH B 4 704 704 HOH HOH . W 6 HOH B 5 705 705 HOH HOH . W 6 HOH B 6 706 706 HOH HOH . W 6 HOH B 7 707 707 HOH HOH . W 6 HOH B 8 708 708 HOH HOH . W 6 HOH B 9 709 709 HOH HOH . W 6 HOH B 10 710 710 HOH HOH . W 6 HOH B 11 711 711 HOH HOH . W 6 HOH B 12 712 712 HOH HOH . W 6 HOH B 13 713 713 HOH HOH . W 6 HOH B 14 714 714 HOH HOH . W 6 HOH B 15 715 715 HOH HOH . W 6 HOH B 16 716 716 HOH HOH . W 6 HOH B 17 717 717 HOH HOH . W 6 HOH B 18 718 718 HOH HOH . W 6 HOH B 19 719 719 HOH HOH . W 6 HOH B 20 720 720 HOH HOH . W 6 HOH B 21 721 721 HOH HOH . W 6 HOH B 22 722 722 HOH HOH . X 6 HOH C 1 701 701 HOH HOH . X 6 HOH C 2 702 702 HOH HOH . X 6 HOH C 3 703 703 HOH HOH . X 6 HOH C 4 704 704 HOH HOH . X 6 HOH C 5 705 705 HOH HOH . X 6 HOH C 6 706 706 HOH HOH . X 6 HOH C 7 707 707 HOH HOH . X 6 HOH C 8 708 708 HOH HOH . X 6 HOH C 9 709 709 HOH HOH . X 6 HOH C 10 710 710 HOH HOH . X 6 HOH C 11 711 711 HOH HOH . X 6 HOH C 12 712 712 HOH HOH . X 6 HOH C 13 713 713 HOH HOH . X 6 HOH C 14 714 714 HOH HOH . X 6 HOH C 15 715 715 HOH HOH . X 6 HOH C 16 716 716 HOH HOH . X 6 HOH C 17 717 717 HOH HOH . X 6 HOH C 18 718 719 HOH HOH . X 6 HOH C 19 719 720 HOH HOH . X 6 HOH C 20 720 721 HOH HOH . X 6 HOH C 21 721 722 HOH HOH . X 6 HOH C 22 722 723 HOH HOH . X 6 HOH C 23 723 724 HOH HOH . Y 6 HOH D 1 701 701 HOH HOH . Y 6 HOH D 2 702 702 HOH HOH . Y 6 HOH D 3 703 703 HOH HOH . Y 6 HOH D 4 704 704 HOH HOH . Y 6 HOH D 5 705 705 HOH HOH . Y 6 HOH D 6 706 706 HOH HOH . Y 6 HOH D 7 707 707 HOH HOH . Y 6 HOH D 8 708 708 HOH HOH . Y 6 HOH D 9 709 709 HOH HOH . Y 6 HOH D 10 710 710 HOH HOH . Y 6 HOH D 11 711 711 HOH HOH . Y 6 HOH D 12 712 712 HOH HOH . Y 6 HOH D 13 713 713 HOH HOH . Y 6 HOH D 14 714 714 HOH HOH . Y 6 HOH D 15 715 715 HOH HOH . Y 6 HOH D 16 716 716 HOH HOH . Y 6 HOH D 17 717 717 HOH HOH . Y 6 HOH D 18 718 718 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . O 5 84 -30.275 8.279 1 109 ? C1 EDO 603 C 1 HETATM 2 O O1 EDO . . . O 5 83.303 -30.593 9.47 1 108.99 ? O1 EDO 603 C 1 HETATM 3 C C2 EDO . . . O 5 84.759 -28.948 8.495 1 109.47 ? C2 EDO 603 C 1 HETATM 4 O O2 EDO . . . O 5 85.58 -28.684 7.371 1 109.94 ? O2 EDO 603 C 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #