data_4PZ2
#
_model_server_result.job_id            MeZ_FxDZCQC_gTGOOB1nCQ 
_model_server_result.datetime_utc      '2024-11-23 02:43:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pz2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":606}' 
#
_entry.id    4PZ2 
#
_exptl.entry_id    4PZ2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4PZ2 
_cell.length_a            233.88 
_cell.length_b            233.88 
_cell.length_c            82.9 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PZ2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        80 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 N N N 
? 5 O N N 
? 5 P N N 
? 5 Q N N 
? 5 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 70 A THR 55 1_555 E NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? 
metalc ? metalc2 A O ARG 71 A ARG 56 1_555 E NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
metalc ? metalc3 A OD1 ASP 139 A ASP 124 1_555 E NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? 
metalc ? metalc4 A O ASP 139 A ASP 124 1_555 E NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? 
metalc ? metalc5 A O GLN 226 A GLN 211 1_555 E NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc6 E NA NA . A NA 601 1_555 V O HOH . A HOH 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.006 ? 
metalc ? metalc7 B OG1 THR 70 B THR 55 1_555 K NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.138 ? 
metalc ? metalc8 B O ARG 71 B ARG 56 1_555 K NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? 
metalc ? metalc9 B O ASP 139 B ASP 124 1_555 K NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc10 B OD1 ASP 139 B ASP 124 1_555 K NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? 
metalc ? metalc11 B O GLN 226 B GLN 211 1_555 K NA NA . B NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? 
metalc ? metalc12 C OG1 THR 70 C THR 55 1_555 M NA NA . C NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.98 ? 
metalc ? metalc13 C O ARG 71 C ARG 56 1_555 M NA NA . C NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? 
metalc ? metalc14 C O ASP 139 C ASP 124 1_555 M NA NA . C NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? 
metalc ? metalc15 C OD1 ASP 139 C ASP 124 1_555 M NA NA . C NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? 
metalc ? metalc16 C O GLN 226 C GLN 211 1_555 M NA NA . C NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc17 D OG1 THR 70 D THR 55 1_555 S NA NA . D NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.209 ? 
metalc ? metalc18 D O ARG 71 D ARG 56 1_555 S NA NA . D NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc19 D O ASP 139 D ASP 124 1_555 S NA NA . D NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? 
metalc ? metalc20 D OD1 ASP 139 D ASP 124 1_555 S NA NA . D NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? 
metalc ? metalc21 D O GLN 226 D GLN 211 1_555 S NA NA . D NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     4PZ2 
_atom_sites.fract_transf_matrix[1][1]    0.004276 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004276 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012063 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NA A 1 601 601 NA NA . 
F 3 PEG A 1 602 602 PEG PEG . 
G 4 NAD A 1 603 603 NAD NAD . 
H 5 EDO A 1 604 604 EDO EDO . 
I 5 EDO A 1 605 605 EDO EDO . 
J 5 EDO A 1 606 602 EDO EDO . 
K 2 NA B 1 601 601 NA NA . 
L 4 NAD B 1 602 602 NAD NAD . 
M 2 NA C 1 601 601 NA NA . 
N 5 EDO C 1 602 603 EDO EDO . 
O 5 EDO C 1 603 604 EDO EDO . 
P 5 EDO C 1 604 605 EDO EDO . 
Q 5 EDO C 1 605 606 EDO EDO . 
R 4 NAD C 1 606 607 NAD NAD . 
S 2 NA D 1 601 601 NA NA . 
T 5 EDO D 1 602 602 EDO EDO . 
U 4 NAD D 1 603 603 NAD NAD . 
V 6 HOH A 1 701 701 HOH HOH . 
V 6 HOH A 2 702 702 HOH HOH . 
V 6 HOH A 3 703 703 HOH HOH . 
V 6 HOH A 4 704 704 HOH HOH . 
V 6 HOH A 5 705 705 HOH HOH . 
V 6 HOH A 6 706 706 HOH HOH . 
V 6 HOH A 7 707 707 HOH HOH . 
V 6 HOH A 8 708 708 HOH HOH . 
V 6 HOH A 9 709 709 HOH HOH . 
V 6 HOH A 10 710 710 HOH HOH . 
V 6 HOH A 11 711 711 HOH HOH . 
V 6 HOH A 12 712 712 HOH HOH . 
V 6 HOH A 13 713 713 HOH HOH . 
V 6 HOH A 14 714 714 HOH HOH . 
V 6 HOH A 15 715 715 HOH HOH . 
V 6 HOH A 16 716 716 HOH HOH . 
V 6 HOH A 17 717 717 HOH HOH . 
V 6 HOH A 18 718 718 HOH HOH . 
V 6 HOH A 19 719 719 HOH HOH . 
V 6 HOH A 20 720 720 HOH HOH . 
V 6 HOH A 21 721 721 HOH HOH . 
V 6 HOH A 22 722 722 HOH HOH . 
V 6 HOH A 23 723 723 HOH HOH . 
V 6 HOH A 24 724 724 HOH HOH . 
V 6 HOH A 25 725 718 HOH HOH . 
W 6 HOH B 1 701 701 HOH HOH . 
W 6 HOH B 2 702 702 HOH HOH . 
W 6 HOH B 3 703 703 HOH HOH . 
W 6 HOH B 4 704 704 HOH HOH . 
W 6 HOH B 5 705 705 HOH HOH . 
W 6 HOH B 6 706 706 HOH HOH . 
W 6 HOH B 7 707 707 HOH HOH . 
W 6 HOH B 8 708 708 HOH HOH . 
W 6 HOH B 9 709 709 HOH HOH . 
W 6 HOH B 10 710 710 HOH HOH . 
W 6 HOH B 11 711 711 HOH HOH . 
W 6 HOH B 12 712 712 HOH HOH . 
W 6 HOH B 13 713 713 HOH HOH . 
W 6 HOH B 14 714 714 HOH HOH . 
W 6 HOH B 15 715 715 HOH HOH . 
W 6 HOH B 16 716 716 HOH HOH . 
W 6 HOH B 17 717 717 HOH HOH . 
W 6 HOH B 18 718 718 HOH HOH . 
W 6 HOH B 19 719 719 HOH HOH . 
W 6 HOH B 20 720 720 HOH HOH . 
W 6 HOH B 21 721 721 HOH HOH . 
W 6 HOH B 22 722 722 HOH HOH . 
X 6 HOH C 1 701 701 HOH HOH . 
X 6 HOH C 2 702 702 HOH HOH . 
X 6 HOH C 3 703 703 HOH HOH . 
X 6 HOH C 4 704 704 HOH HOH . 
X 6 HOH C 5 705 705 HOH HOH . 
X 6 HOH C 6 706 706 HOH HOH . 
X 6 HOH C 7 707 707 HOH HOH . 
X 6 HOH C 8 708 708 HOH HOH . 
X 6 HOH C 9 709 709 HOH HOH . 
X 6 HOH C 10 710 710 HOH HOH . 
X 6 HOH C 11 711 711 HOH HOH . 
X 6 HOH C 12 712 712 HOH HOH . 
X 6 HOH C 13 713 713 HOH HOH . 
X 6 HOH C 14 714 714 HOH HOH . 
X 6 HOH C 15 715 715 HOH HOH . 
X 6 HOH C 16 716 716 HOH HOH . 
X 6 HOH C 17 717 717 HOH HOH . 
X 6 HOH C 18 718 719 HOH HOH . 
X 6 HOH C 19 719 720 HOH HOH . 
X 6 HOH C 20 720 721 HOH HOH . 
X 6 HOH C 21 721 722 HOH HOH . 
X 6 HOH C 22 722 723 HOH HOH . 
X 6 HOH C 23 723 724 HOH HOH . 
Y 6 HOH D 1 701 701 HOH HOH . 
Y 6 HOH D 2 702 702 HOH HOH . 
Y 6 HOH D 3 703 703 HOH HOH . 
Y 6 HOH D 4 704 704 HOH HOH . 
Y 6 HOH D 5 705 705 HOH HOH . 
Y 6 HOH D 6 706 706 HOH HOH . 
Y 6 HOH D 7 707 707 HOH HOH . 
Y 6 HOH D 8 708 708 HOH HOH . 
Y 6 HOH D 9 709 709 HOH HOH . 
Y 6 HOH D 10 710 710 HOH HOH . 
Y 6 HOH D 11 711 711 HOH HOH . 
Y 6 HOH D 12 712 712 HOH HOH . 
Y 6 HOH D 13 713 713 HOH HOH . 
Y 6 HOH D 14 714 714 HOH HOH . 
Y 6 HOH D 15 715 715 HOH HOH . 
Y 6 HOH D 16 716 716 HOH HOH . 
Y 6 HOH D 17 717 717 HOH HOH . 
Y 6 HOH D 18 718 718 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . J 5 77.129 -15.435 9.681 1 106.48 ? C1 EDO 606 A 1 
HETATM 2 O O1 EDO . . . J 5 76.68 -16.749 9.363 1 105.47 ? O1 EDO 606 A 1 
HETATM 3 C C2 EDO . . . J 5 76.906 -14.49 8.466 1 105.36 ? C2 EDO 606 A 1 
HETATM 4 O O2 EDO . . . J 5 77.613 -13.276 8.674 1 104.73 ? O2 EDO 606 A 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#