data_4PZD
#
_model_server_result.job_id            UBTCpL0HJ8FpWEFwHqLK7g 
_model_server_result.datetime_utc      '2025-02-05 03:53:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4pzd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":301}' 
#
_entry.id    4PZD 
#
_exptl.entry_id    4PZD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.09 
_cell.angle_gamma         90 
_cell.entry_id            4PZD 
_cell.length_a            235.076 
_cell.length_b            135.586 
_cell.length_c            97.445 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4PZD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 software_defined_assembly 4 
PISA dimeric 2 author_and_software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,J,S 1 1,2 
B,C,K,L,T,U 2 1 
D,G,M,P,V,Y 3 1 
E,F,N,O,W,X 4 1 
H,I,Q,R,Z,AA 5 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 0.153066 0 -97.44488 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 237 n n 
PA O2A NAD sing 238 n n 
PA O5B NAD sing 239 n n 
PA O3 NAD sing 240 n n 
O2A HOA2 NAD sing 241 n n 
O5B C5B NAD sing 242 n n 
C5B C4B NAD sing 243 n n 
C5B H51A NAD sing 244 n n 
C5B H52A NAD sing 245 n n 
C4B O4B NAD sing 246 n n 
C4B C3B NAD sing 247 n n 
C4B H4B NAD sing 248 n n 
O4B C1B NAD sing 249 n n 
C3B O3B NAD sing 250 n n 
C3B C2B NAD sing 251 n n 
C3B H3B NAD sing 252 n n 
O3B HO3A NAD sing 253 n n 
C2B O2B NAD sing 254 n n 
C2B C1B NAD sing 255 n n 
C2B H2B NAD sing 256 n n 
O2B HO2A NAD sing 257 n n 
C1B N9A NAD sing 258 n n 
C1B H1B NAD sing 259 n n 
N9A C8A NAD sing 260 n y 
N9A C4A NAD sing 261 n y 
C8A N7A NAD doub 262 n y 
C8A H8A NAD sing 263 n n 
N7A C5A NAD sing 264 n y 
C5A C6A NAD sing 265 n y 
C5A C4A NAD doub 266 n y 
C6A N6A NAD sing 267 n n 
C6A N1A NAD doub 268 n y 
N6A H61A NAD sing 269 n n 
N6A H62A NAD sing 270 n n 
N1A C2A NAD sing 271 n y 
C2A N3A NAD doub 272 n y 
C2A H2A NAD sing 273 n n 
N3A C4A NAD sing 274 n y 
O3 PN NAD sing 275 n n 
PN O1N NAD doub 276 n n 
PN O2N NAD sing 277 n n 
PN O5D NAD sing 278 n n 
O5D C5D NAD sing 279 n n 
C5D C4D NAD sing 280 n n 
C5D H51N NAD sing 281 n n 
C5D H52N NAD sing 282 n n 
C4D O4D NAD sing 283 n n 
C4D C3D NAD sing 284 n n 
C4D H4D NAD sing 285 n n 
O4D C1D NAD sing 286 n n 
C3D O3D NAD sing 287 n n 
C3D C2D NAD sing 288 n n 
C3D H3D NAD sing 289 n n 
O3D HO3N NAD sing 290 n n 
C2D O2D NAD sing 291 n n 
C2D C1D NAD sing 292 n n 
C2D H2D NAD sing 293 n n 
O2D HO2N NAD sing 294 n n 
C1D N1N NAD sing 295 n n 
C1D H1D NAD sing 296 n n 
N1N C2N NAD sing 297 n y 
N1N C6N NAD doub 298 n y 
C2N C3N NAD doub 299 n y 
C2N H2N NAD sing 300 n n 
C3N C7N NAD sing 301 n n 
C3N C4N NAD sing 302 n y 
C7N O7N NAD doub 303 n n 
C7N N7N NAD sing 304 n n 
N7N H71N NAD sing 305 n n 
N7N H72N NAD sing 306 n n 
C4N C5N NAD doub 307 n y 
C4N H4N NAD sing 308 n n 
C5N C6N NAD sing 309 n y 
C5N H5N NAD sing 310 n n 
C6N H6N NAD sing 311 n n 
#
_atom_sites.entry_id                     4PZD 
_atom_sites.fract_transf_matrix[1][1]    0.004254 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000006 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007375 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010262 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 2 NAD A 1 301 1 NAD NAD . 
K 2 NAD B 1 301 2 NAD NAD . 
L 2 NAD C 1 301 3 NAD NAD . 
M 2 NAD D 1 301 4 NAD NAD . 
N 2 NAD E 1 301 5 NAD NAD . 
O 2 NAD F 1 301 6 NAD NAD . 
P 2 NAD G 1 301 7 NAD NAD . 
Q 2 NAD H 1 301 8 NAD NAD . 
R 2 NAD I 1 301 9 NAD NAD . 
S 3 HOH A 1 401 9 HOH HOH . 
S 3 HOH A 2 402 10 HOH HOH . 
S 3 HOH A 3 403 17 HOH HOH . 
S 3 HOH A 4 404 18 HOH HOH . 
S 3 HOH A 5 405 46 HOH HOH . 
S 3 HOH A 6 406 70 HOH HOH . 
S 3 HOH A 7 407 86 HOH HOH . 
S 3 HOH A 8 408 95 HOH HOH . 
S 3 HOH A 9 409 96 HOH HOH . 
S 3 HOH A 10 410 98 HOH HOH . 
T 3 HOH B 1 401 11 HOH HOH . 
T 3 HOH B 2 402 15 HOH HOH . 
T 3 HOH B 3 403 19 HOH HOH . 
T 3 HOH B 4 404 32 HOH HOH . 
T 3 HOH B 5 405 38 HOH HOH . 
T 3 HOH B 6 406 42 HOH HOH . 
T 3 HOH B 7 407 54 HOH HOH . 
T 3 HOH B 8 408 62 HOH HOH . 
T 3 HOH B 9 409 92 HOH HOH . 
T 3 HOH B 10 410 93 HOH HOH . 
U 3 HOH C 1 401 5 HOH HOH . 
U 3 HOH C 2 402 22 HOH HOH . 
U 3 HOH C 3 403 24 HOH HOH . 
U 3 HOH C 4 404 25 HOH HOH . 
U 3 HOH C 5 405 26 HOH HOH . 
U 3 HOH C 6 406 34 HOH HOH . 
U 3 HOH C 7 407 35 HOH HOH . 
U 3 HOH C 8 408 45 HOH HOH . 
U 3 HOH C 9 409 51 HOH HOH . 
U 3 HOH C 10 410 57 HOH HOH . 
U 3 HOH C 11 411 60 HOH HOH . 
U 3 HOH C 12 412 75 HOH HOH . 
U 3 HOH C 13 413 77 HOH HOH . 
U 3 HOH C 14 414 80 HOH HOH . 
U 3 HOH C 15 415 85 HOH HOH . 
U 3 HOH C 16 416 88 HOH HOH . 
U 3 HOH C 17 417 97 HOH HOH . 
V 3 HOH D 1 401 3 HOH HOH . 
V 3 HOH D 2 402 16 HOH HOH . 
V 3 HOH D 3 403 21 HOH HOH . 
V 3 HOH D 4 404 67 HOH HOH . 
V 3 HOH D 5 405 83 HOH HOH . 
V 3 HOH D 6 406 94 HOH HOH . 
W 3 HOH E 1 401 14 HOH HOH . 
W 3 HOH E 2 402 27 HOH HOH . 
W 3 HOH E 3 403 31 HOH HOH . 
W 3 HOH E 4 404 43 HOH HOH . 
W 3 HOH E 5 405 50 HOH HOH . 
W 3 HOH E 6 406 52 HOH HOH . 
W 3 HOH E 7 407 65 HOH HOH . 
W 3 HOH E 8 408 66 HOH HOH . 
W 3 HOH E 9 409 69 HOH HOH . 
W 3 HOH E 10 410 73 HOH HOH . 
W 3 HOH E 11 411 82 HOH HOH . 
W 3 HOH E 12 412 90 HOH HOH . 
W 3 HOH E 13 413 99 HOH HOH . 
W 3 HOH E 14 414 100 HOH HOH . 
X 3 HOH F 1 401 8 HOH HOH . 
X 3 HOH F 2 402 12 HOH HOH . 
X 3 HOH F 3 403 13 HOH HOH . 
X 3 HOH F 4 404 20 HOH HOH . 
X 3 HOH F 5 405 28 HOH HOH . 
X 3 HOH F 6 406 33 HOH HOH . 
X 3 HOH F 7 407 47 HOH HOH . 
X 3 HOH F 8 408 56 HOH HOH . 
X 3 HOH F 9 409 63 HOH HOH . 
X 3 HOH F 10 410 64 HOH HOH . 
X 3 HOH F 11 411 68 HOH HOH . 
X 3 HOH F 12 412 71 HOH HOH . 
X 3 HOH F 13 413 74 HOH HOH . 
X 3 HOH F 14 414 78 HOH HOH . 
X 3 HOH F 15 415 79 HOH HOH . 
X 3 HOH F 16 416 87 HOH HOH . 
X 3 HOH F 17 417 89 HOH HOH . 
Y 3 HOH G 1 401 2 HOH HOH . 
Y 3 HOH G 2 402 7 HOH HOH . 
Y 3 HOH G 3 403 30 HOH HOH . 
Y 3 HOH G 4 404 41 HOH HOH . 
Y 3 HOH G 5 405 48 HOH HOH . 
Y 3 HOH G 6 406 76 HOH HOH . 
Y 3 HOH G 7 407 81 HOH HOH . 
Z 3 HOH H 1 401 4 HOH HOH . 
Z 3 HOH H 2 402 36 HOH HOH . 
Z 3 HOH H 3 403 37 HOH HOH . 
Z 3 HOH H 4 404 40 HOH HOH . 
Z 3 HOH H 5 405 44 HOH HOH . 
Z 3 HOH H 6 406 59 HOH HOH . 
Z 3 HOH H 7 407 61 HOH HOH . 
Z 3 HOH H 8 408 72 HOH HOH . 
Z 3 HOH H 9 409 91 HOH HOH . 
AA 3 HOH I 1 401 1 HOH HOH . 
AA 3 HOH I 2 402 6 HOH HOH . 
AA 3 HOH I 3 403 23 HOH HOH . 
AA 3 HOH I 4 404 29 HOH HOH . 
AA 3 HOH I 5 405 39 HOH HOH . 
AA 3 HOH I 6 406 49 HOH HOH . 
AA 3 HOH I 7 407 53 HOH HOH . 
AA 3 HOH I 8 408 55 HOH HOH . 
AA 3 HOH I 9 409 58 HOH HOH . 
AA 3 HOH I 10 410 84 HOH HOH . 
AA 3 HOH I 11 411 101 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . O 2 -68.868 -67.115 -17.495 1 78.27 ? PA NAD 301 F 1 
HETATM 2 O O1A NAD . . . O 2 -68.363 -67.37 -18.894 1 75.74 ? O1A NAD 301 F 1 
HETATM 3 O O2A NAD . . . O 2 -68.306 -67.927 -16.352 1 74.37 ? O2A NAD 301 F 1 
HETATM 4 O O5B NAD . . . O 2 -70.444 -67.378 -17.65 1 88.9 ? O5B NAD 301 F 1 
HETATM 5 C C5B NAD . . . O 2 -71.221 -67.026 -18.771 1 78.47 ? C5B NAD 301 F 1 
HETATM 6 C C4B NAD . . . O 2 -72.149 -68.212 -18.945 1 79.44 ? C4B NAD 301 F 1 
HETATM 7 O O4B NAD . . . O 2 -73.454 -67.72 -19.296 1 80.97 ? O4B NAD 301 F 1 
HETATM 8 C C3B NAD . . . O 2 -71.627 -69.134 -20.049 1 80.45 ? C3B NAD 301 F 1 
HETATM 9 O O3B NAD . . . O 2 -71.611 -70.522 -19.662 1 70.36 ? O3B NAD 301 F 1 
HETATM 10 C C2B NAD . . . O 2 -72.593 -68.837 -21.181 1 79.62 ? C2B NAD 301 F 1 
HETATM 11 O O2B NAD . . . O 2 -72.775 -69.935 -22.066 1 84.56 ? O2B NAD 301 F 1 
HETATM 12 C C1B NAD . . . O 2 -73.883 -68.449 -20.453 1 80.55 ? C1B NAD 301 F 1 
HETATM 13 N N9A NAD . . . O 2 -74.826 -67.777 -21.392 1 78.51 ? N9A NAD 301 F 1 
HETATM 14 C C8A NAD . . . O 2 -74.55 -66.772 -22.261 1 74.19 ? C8A NAD 301 F 1 
HETATM 15 N N7A NAD . . . O 2 -75.639 -66.413 -22.982 1 62.62 ? N7A NAD 301 F 1 
HETATM 16 C C5A NAD . . . O 2 -76.645 -67.221 -22.592 1 70.72 ? C5A NAD 301 F 1 
HETATM 17 C C6A NAD . . . O 2 -78.074 -67.404 -22.956 1 62.87 ? C6A NAD 301 F 1 
HETATM 18 N N6A NAD . . . O 2 -78.651 -66.632 -23.906 1 59.12 ? N6A NAD 301 F 1 
HETATM 19 N N1A NAD . . . O 2 -78.781 -68.359 -22.287 1 72.72 ? N1A NAD 301 F 1 
HETATM 20 C C2A NAD . . . O 2 -78.227 -69.157 -21.345 1 77.61 ? C2A NAD 301 F 1 
HETATM 21 N N3A NAD . . . O 2 -76.922 -69.052 -20.972 1 76.26 ? N3A NAD 301 F 1 
HETATM 22 C C4A NAD . . . O 2 -76.104 -68.121 -21.544 1 75.48 ? C4A NAD 301 F 1 
HETATM 23 O O3 NAD . . . O 2 -68.938 -65.572 -16.96 1 85.49 ? O3 NAD 301 F 1 
HETATM 24 P PN NAD . . . O 2 -69.426 -65.141 -15.446 1 92.69 ? PN NAD 301 F 1 
HETATM 25 O O1N NAD . . . O 2 -68.216 -64.732 -14.628 1 102.79 ? O1N NAD 301 F 1 
HETATM 26 O O2N NAD . . . O 2 -70.455 -66.1 -14.856 1 97.47 ? O2N NAD 301 F 1 
HETATM 27 O O5D NAD . . . O 2 -70.211 -63.77 -15.691 1 90.03 ? O5D NAD 301 F 1 
HETATM 28 C C5D NAD . . . O 2 -71.618 -63.727 -15.844 1 93.84 ? C5D NAD 301 F 1 
HETATM 29 C C4D NAD . . . O 2 -72.037 -62.303 -15.589 1 97.17 ? C4D NAD 301 F 1 
HETATM 30 O O4D NAD . . . O 2 -72.105 -62.022 -14.196 1 111.04 ? O4D NAD 301 F 1 
HETATM 31 C C3D NAD . . . O 2 -71.017 -61.301 -16.088 1 114.58 ? C3D NAD 301 F 1 
HETATM 32 O O3D NAD . . . O 2 -70.996 -61.166 -17.52 1 125.09 ? O3D NAD 301 F 1 
HETATM 33 C C2D NAD . . . O 2 -71.474 -60.101 -15.286 1 122.61 ? C2D NAD 301 F 1 
HETATM 34 O O2D NAD . . . O 2 -72.784 -59.662 -15.691 1 113.14 ? O2D NAD 301 F 1 
HETATM 35 C C1D NAD . . . O 2 -71.691 -60.662 -13.91 1 133.3 ? C1D NAD 301 F 1 
HETATM 36 N N1N NAD . . . O 2 -70.553 -60.477 -12.942 1 152.7 ? N1N NAD 301 F 1 
HETATM 37 C C2N NAD . . . O 2 -69.309 -61.001 -13.135 1 161.15 ? C2N NAD 301 F 1 
HETATM 38 C C3N NAD . . . O 2 -68.271 -60.822 -12.198 1 158.37 ? C3N NAD 301 F 1 
HETATM 39 C C7N NAD . . . O 2 -66.892 -61.405 -12.43 1 138.99 ? C7N NAD 301 F 1 
HETATM 40 O O7N NAD . . . O 2 -66.525 -62.407 -11.826 1 130.9 ? O7N NAD 301 F 1 
HETATM 41 N N7N NAD . . . O 2 -66.083 -60.801 -13.301 1 133.26 ? N7N NAD 301 F 1 
HETATM 42 C C4N NAD . . . O 2 -68.526 -60.081 -11.041 1 165.38 ? C4N NAD 301 F 1 
HETATM 43 C C5N NAD . . . O 2 -69.798 -59.551 -10.848 1 157.6 ? C5N NAD 301 F 1 
HETATM 44 C C6N NAD . . . O 2 -70.79 -59.761 -11.811 1 152.76 ? C6N NAD 301 F 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#