data_4PZE # _model_server_result.job_id 61PUfkFKWS9a-45mddqQ6Q _model_server_result.datetime_utc '2024-12-11 02:20:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pze # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 4PZE # _exptl.entry_id 4PZE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 851.607 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETOACETYL-COENZYME A' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.09 _cell.angle_gamma 90 _cell.entry_id 4PZE _cell.length_a 234.243 _cell.length_b 135.373 _cell.length_c 97.356 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PZE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,J,S 1 1,2 B,C,K,L,T,U 2 1 D,G,M,P,V,Y 3 1 E,F,N,O,W,X 4 1 H,I,Q,R,Z,AA 5 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 0.152926 0 -97.35588 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N # _chem_comp.formula 'C25 H40 N7 O18 P3 S' _chem_comp.formula_weight 851.607 _chem_comp.id CAA _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETOACETYL-COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A CAA sing 70 n y N1A C6A CAA doub 71 n y C2A N3A CAA doub 72 n y C2A H2A CAA sing 73 n n N3A C4A CAA sing 74 n y C4A C5A CAA doub 75 n y C4A N9A CAA sing 76 n y C5A C6A CAA sing 77 n y C5A N7A CAA sing 78 n y C6A N6A CAA sing 79 n n N6A H61A CAA sing 80 n n N6A H62A CAA sing 81 n n N7A C8A CAA doub 82 n y C8A N9A CAA sing 83 n y C8A H8A CAA sing 84 n n N9A C1B CAA sing 85 n n C1B C2B CAA sing 86 n n C1B O4B CAA sing 87 n n C1B H1B CAA sing 88 n n C2B O2B CAA sing 89 n n C2B C3B CAA sing 90 n n C2B H2B CAA sing 91 n n O2B HO2A CAA sing 92 n n C3B O3B CAA sing 93 n n C3B C4B CAA sing 94 n n C3B H3B CAA sing 95 n n O3B P3B CAA sing 96 n n P3B O7A CAA doub 97 n n P3B O8A CAA sing 98 n n P3B O9A CAA sing 99 n n O8A HOA8 CAA sing 100 n n O9A HOA9 CAA sing 101 n n C4B O4B CAA sing 102 n n C4B C5B CAA sing 103 n n C4B H4B CAA sing 104 n n C5B O5B CAA sing 105 n n C5B H51A CAA sing 106 n n C5B H52A CAA sing 107 n n O5B P1A CAA sing 108 n n P1A O1A CAA doub 109 n n P1A O2A CAA sing 110 n n P1A O3A CAA sing 111 n n O2A HOA2 CAA sing 112 n n O3A P2A CAA sing 113 n n P2A O4A CAA doub 114 n n P2A O5A CAA sing 115 n n P2A O6A CAA sing 116 n n O5A HOA5 CAA sing 117 n n O6A CCP CAA sing 118 n n CBP CCP CAA sing 119 n n CBP CDP CAA sing 120 n n CBP CEP CAA sing 121 n n CBP CAP CAA sing 122 n n CCP H121 CAA sing 123 n n CCP H122 CAA sing 124 n n CDP H131 CAA sing 125 n n CDP H132 CAA sing 126 n n CDP H133 CAA sing 127 n n CEP H141 CAA sing 128 n n CEP H142 CAA sing 129 n n CEP H143 CAA sing 130 n n CAP OAP CAA sing 131 n n CAP C9P CAA sing 132 n n CAP H10 CAA sing 133 n n OAP HO1 CAA sing 134 n n C9P O9P CAA doub 135 n n C9P N8P CAA sing 136 n n N8P C7P CAA sing 137 n n N8P HN8 CAA sing 138 n n C7P C6P CAA sing 139 n n C7P H71 CAA sing 140 n n C7P H72 CAA sing 141 n n C6P C5P CAA sing 142 n n C6P H61 CAA sing 143 n n C6P H62 CAA sing 144 n n C5P O5P CAA doub 145 n n C5P N4P CAA sing 146 n n N4P C3P CAA sing 147 n n N4P HN4 CAA sing 148 n n C3P C2P CAA sing 149 n n C3P H31 CAA sing 150 n n C3P H32 CAA sing 151 n n C2P S1P CAA sing 152 n n C2P H21 CAA sing 153 n n C2P H22 CAA sing 154 n n S1P C1 CAA sing 155 n n C1 O1 CAA doub 156 n n C1 C2 CAA sing 157 n n C2 C3 CAA sing 158 n n C2 "H2'1" CAA sing 159 n n C2 "H2'2" CAA sing 160 n n C3 O3 CAA doub 161 n n C3 C4 CAA sing 162 n n C4 "H4'1" CAA sing 163 n n C4 "H4'2" CAA sing 164 n n C4 "H4'3" CAA sing 165 n n # _atom_sites.entry_id 4PZE _atom_sites.fract_transf_matrix[1][1] 0.004269 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000007 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007387 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010272 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 2 CAA A 1 301 6 CAA CAA . K 2 CAA B 1 301 7 CAA CAA . L 2 CAA C 1 301 2 CAA CAA . M 2 CAA D 1 301 3 CAA CAA . N 2 CAA E 1 301 4 CAA CAA . O 2 CAA F 1 301 8 CAA CAA . P 2 CAA G 1 301 5 CAA CAA . Q 2 CAA H 1 301 9 CAA CAA . R 2 CAA I 1 301 1 CAA CAA . S 3 HOH A 1 401 1 HOH HOH . S 3 HOH A 2 402 9 HOH HOH . S 3 HOH A 3 403 13 HOH HOH . S 3 HOH A 4 404 19 HOH HOH . S 3 HOH A 5 405 50 HOH HOH . S 3 HOH A 6 406 53 HOH HOH . S 3 HOH A 7 407 59 HOH HOH . S 3 HOH A 8 408 69 HOH HOH . S 3 HOH A 9 409 75 HOH HOH . S 3 HOH A 10 410 89 HOH HOH . S 3 HOH A 11 411 127 HOH HOH . S 3 HOH A 12 412 136 HOH HOH . S 3 HOH A 13 413 154 HOH HOH . T 3 HOH B 1 401 3 HOH HOH . T 3 HOH B 2 402 8 HOH HOH . T 3 HOH B 3 403 24 HOH HOH . T 3 HOH B 4 404 45 HOH HOH . T 3 HOH B 5 405 46 HOH HOH . T 3 HOH B 6 406 94 HOH HOH . T 3 HOH B 7 407 111 HOH HOH . T 3 HOH B 8 408 153 HOH HOH . U 3 HOH C 1 401 2 HOH HOH . U 3 HOH C 2 402 12 HOH HOH . U 3 HOH C 3 403 15 HOH HOH . U 3 HOH C 4 404 18 HOH HOH . U 3 HOH C 5 405 33 HOH HOH . U 3 HOH C 6 406 57 HOH HOH . U 3 HOH C 7 407 61 HOH HOH . U 3 HOH C 8 408 63 HOH HOH . U 3 HOH C 9 409 70 HOH HOH . U 3 HOH C 10 410 77 HOH HOH . U 3 HOH C 11 411 79 HOH HOH . U 3 HOH C 12 412 85 HOH HOH . U 3 HOH C 13 413 86 HOH HOH . U 3 HOH C 14 414 99 HOH HOH . U 3 HOH C 15 415 109 HOH HOH . U 3 HOH C 16 416 110 HOH HOH . U 3 HOH C 17 417 115 HOH HOH . U 3 HOH C 18 418 131 HOH HOH . U 3 HOH C 19 419 141 HOH HOH . U 3 HOH C 20 420 158 HOH HOH . V 3 HOH D 1 401 10 HOH HOH . V 3 HOH D 2 402 11 HOH HOH . V 3 HOH D 3 403 22 HOH HOH . V 3 HOH D 4 404 23 HOH HOH . V 3 HOH D 5 405 27 HOH HOH . V 3 HOH D 6 406 55 HOH HOH . V 3 HOH D 7 407 71 HOH HOH . V 3 HOH D 8 408 80 HOH HOH . V 3 HOH D 9 409 138 HOH HOH . V 3 HOH D 10 410 155 HOH HOH . W 3 HOH E 1 401 6 HOH HOH . W 3 HOH E 2 402 16 HOH HOH . W 3 HOH E 3 403 17 HOH HOH . W 3 HOH E 4 404 20 HOH HOH . W 3 HOH E 5 405 29 HOH HOH . W 3 HOH E 6 406 34 HOH HOH . W 3 HOH E 7 407 39 HOH HOH . W 3 HOH E 8 408 51 HOH HOH . W 3 HOH E 9 409 52 HOH HOH . W 3 HOH E 10 410 60 HOH HOH . W 3 HOH E 11 411 66 HOH HOH . W 3 HOH E 12 412 96 HOH HOH . W 3 HOH E 13 413 104 HOH HOH . W 3 HOH E 14 414 122 HOH HOH . W 3 HOH E 15 415 132 HOH HOH . X 3 HOH F 1 401 4 HOH HOH . X 3 HOH F 2 402 7 HOH HOH . X 3 HOH F 3 403 14 HOH HOH . X 3 HOH F 4 404 28 HOH HOH . X 3 HOH F 5 405 37 HOH HOH . X 3 HOH F 6 406 48 HOH HOH . X 3 HOH F 7 407 49 HOH HOH . X 3 HOH F 8 408 54 HOH HOH . X 3 HOH F 9 409 56 HOH HOH . X 3 HOH F 10 410 67 HOH HOH . X 3 HOH F 11 411 68 HOH HOH . X 3 HOH F 12 412 72 HOH HOH . X 3 HOH F 13 413 74 HOH HOH . X 3 HOH F 14 414 81 HOH HOH . X 3 HOH F 15 415 82 HOH HOH . X 3 HOH F 16 416 83 HOH HOH . X 3 HOH F 17 417 84 HOH HOH . X 3 HOH F 18 418 87 HOH HOH . X 3 HOH F 19 419 95 HOH HOH . X 3 HOH F 20 420 105 HOH HOH . X 3 HOH F 21 421 108 HOH HOH . X 3 HOH F 22 422 128 HOH HOH . X 3 HOH F 23 423 130 HOH HOH . Y 3 HOH G 1 401 26 HOH HOH . Y 3 HOH G 2 402 43 HOH HOH . Y 3 HOH G 3 403 58 HOH HOH . Y 3 HOH G 4 404 64 HOH HOH . Y 3 HOH G 5 405 73 HOH HOH . Y 3 HOH G 6 406 76 HOH HOH . Y 3 HOH G 7 407 92 HOH HOH . Y 3 HOH G 8 408 107 HOH HOH . Y 3 HOH G 9 409 135 HOH HOH . Y 3 HOH G 10 410 156 HOH HOH . Y 3 HOH G 11 411 157 HOH HOH . Z 3 HOH H 1 401 25 HOH HOH . Z 3 HOH H 2 402 38 HOH HOH . Z 3 HOH H 3 403 40 HOH HOH . Z 3 HOH H 4 404 42 HOH HOH . Z 3 HOH H 5 405 98 HOH HOH . AA 3 HOH I 1 401 5 HOH HOH . AA 3 HOH I 2 402 35 HOH HOH . AA 3 HOH I 3 403 62 HOH HOH . AA 3 HOH I 4 404 88 HOH HOH . AA 3 HOH I 5 405 93 HOH HOH . AA 3 HOH I 6 406 100 HOH HOH . AA 3 HOH I 7 407 116 HOH HOH . AA 3 HOH I 8 408 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A CAA . . . J 2 -16.899 -45.765 -45.396 1 150.32 ? N1A CAA 301 A 1 HETATM 2 C C2A CAA . . . J 2 -15.583 -45.846 -45.686 1 155.34 ? C2A CAA 301 A 1 HETATM 3 N N3A CAA . . . J 2 -14.621 -45.831 -44.733 1 167.89 ? N3A CAA 301 A 1 HETATM 4 C C4A CAA . . . J 2 -14.902 -45.734 -43.396 1 172.98 ? C4A CAA 301 A 1 HETATM 5 C C5A CAA . . . J 2 -16.329 -45.643 -43.016 1 165.76 ? C5A CAA 301 A 1 HETATM 6 C C6A CAA . . . J 2 -17.341 -45.664 -44.117 1 153.13 ? C6A CAA 301 A 1 HETATM 7 N N6A CAA . . . J 2 -18.67 -45.585 -43.859 1 140.58 ? N6A CAA 301 A 1 HETATM 8 N N7A CAA . . . J 2 -16.35 -45.558 -41.669 1 165.1 ? N7A CAA 301 A 1 HETATM 9 C C8A CAA . . . J 2 -15.067 -45.588 -41.216 1 164.05 ? C8A CAA 301 A 1 HETATM 10 N N9A CAA . . . J 2 -14.19 -45.68 -42.24 1 171.23 ? N9A CAA 301 A 1 HETATM 11 C C1B CAA . . . J 2 -12.7 -45.757 -42.035 1 171 ? C1B CAA 301 A 1 HETATM 12 C C2B CAA . . . J 2 -11.961 -46.238 -43.271 1 170.73 ? C2B CAA 301 A 1 HETATM 13 O O2B CAA . . . J 2 -12.194 -47.638 -43.469 1 164.07 ? O2B CAA 301 A 1 HETATM 14 C C3B CAA . . . J 2 -10.514 -45.848 -42.996 1 173.39 ? C3B CAA 301 A 1 HETATM 15 O O3B CAA . . . J 2 -9.711 -46.95 -42.531 1 172.52 ? O3B CAA 301 A 1 HETATM 16 P P3B CAA . . . J 2 -8.971 -48.041 -43.489 1 157.02 ? P3B CAA 301 A 1 HETATM 17 O O7A CAA . . . J 2 -9.975 -49.171 -43.578 1 149.47 ? O7A CAA 301 A 1 HETATM 18 O O8A CAA . . . J 2 -7.711 -48.418 -42.746 1 150.65 ? O8A CAA 301 A 1 HETATM 19 O O9A CAA . . . J 2 -8.686 -47.335 -44.798 1 142.02 ? O9A CAA 301 A 1 HETATM 20 C C4B CAA . . . J 2 -10.609 -44.719 -41.955 1 166.62 ? C4B CAA 301 A 1 HETATM 21 O O4B CAA . . . J 2 -12.012 -44.54 -41.689 1 166.62 ? O4B CAA 301 A 1 HETATM 22 C C5B CAA . . . J 2 -9.984 -43.393 -42.402 1 168.58 ? C5B CAA 301 A 1 HETATM 23 O O5B CAA . . . J 2 -8.673 -43.574 -42.956 1 179.16 ? O5B CAA 301 A 1 HETATM 24 P P1A CAA . . . J 2 -8.367 -43.286 -44.524 1 201.34 ? P1A CAA 301 A 1 HETATM 25 O O1A CAA . . . J 2 -8.881 -44.449 -45.336 1 197.7 ? O1A CAA 301 A 1 HETATM 26 O O2A CAA . . . J 2 -8.901 -41.913 -44.861 1 197.3 ? O2A CAA 301 A 1 HETATM 27 O O3A CAA . . . J 2 -6.748 -43.352 -44.653 1 218.67 ? O3A CAA 301 A 1 HETATM 28 P P2A CAA . . . J 2 -5.764 -42.253 -45.336 1 230.72 ? P2A CAA 301 A 1 HETATM 29 O O4A CAA . . . J 2 -4.536 -42.945 -45.898 1 205.67 ? O4A CAA 301 A 1 HETATM 30 O O5A CAA . . . J 2 -6.552 -41.315 -46.224 1 223.94 ? O5A CAA 301 A 1 HETATM 31 O O6A CAA . . . J 2 -5.31 -41.471 -44.001 1 234.41 ? O6A CAA 301 A 1 HETATM 32 C CBP CAA . . . J 2 -5.892 -39.27 -43.113 1 217.58 ? CBP CAA 301 A 1 HETATM 33 C CCP CAA . . . J 2 -4.931 -40.096 -43.968 1 228.05 ? CCP CAA 301 A 1 HETATM 34 C CDP CAA . . . J 2 -5.972 -39.883 -41.72 1 216.65 ? CDP CAA 301 A 1 HETATM 35 C CEP CAA . . . J 2 -7.281 -39.336 -43.74 1 217.9 ? CEP CAA 301 A 1 HETATM 36 C CAP CAA . . . J 2 -5.36 -37.823 -42.957 1 198.35 ? CAP CAA 301 A 1 HETATM 37 O OAP CAA . . . J 2 -4.257 -37.555 -43.836 1 196.41 ? OAP CAA 301 A 1 HETATM 38 C C9P CAA . . . J 2 -6.4 -36.768 -43.231 1 175.77 ? C9P CAA 301 A 1 HETATM 39 O O9P CAA . . . J 2 -6.703 -36.506 -44.385 1 160.25 ? O9P CAA 301 A 1 HETATM 40 N N8P CAA . . . J 2 -6.933 -36.154 -42.17 1 164.33 ? N8P CAA 301 A 1 HETATM 41 C C7P CAA . . . J 2 -7.92 -35.091 -42.296 1 147.46 ? C7P CAA 301 A 1 HETATM 42 C C6P CAA . . . J 2 -7.738 -33.97 -41.27 1 134.88 ? C6P CAA 301 A 1 HETATM 43 C C5P CAA . . . J 2 -6.408 -33.233 -41.401 1 122.18 ? C5P CAA 301 A 1 HETATM 44 O O5P CAA . . . J 2 -5.557 -33.59 -42.205 1 120.23 ? O5P CAA 301 A 1 HETATM 45 N N4P CAA . . . J 2 -6.173 -32.171 -40.631 1 113.45 ? N4P CAA 301 A 1 HETATM 46 C C3P CAA . . . J 2 -7.123 -31.606 -39.698 1 115.95 ? C3P CAA 301 A 1 HETATM 47 C C2P CAA . . . J 2 -6.47 -31.166 -38.386 1 122.42 ? C2P CAA 301 A 1 HETATM 48 S S1P CAA . . . J 2 -6.42 -29.413 -38.156 1 128.73 ? S1P CAA 301 A 1 HETATM 49 C C1 CAA . . . J 2 -8.013 -28.894 -38.322 1 118.48 ? C1 CAA 301 A 1 HETATM 50 O O1 CAA . . . J 2 -8.895 -29.653 -38.658 1 133.09 ? O1 CAA 301 A 1 HETATM 51 C C2 CAA . . . J 2 -8.44 -27.472 -38.068 1 108.01 ? C2 CAA 301 A 1 HETATM 52 C C3 CAA . . . J 2 -9.24 -27.336 -36.789 1 104.83 ? C3 CAA 301 A 1 HETATM 53 O O3 CAA . . . J 2 -9.582 -26.206 -36.48 1 97.3 ? O3 CAA 301 A 1 HETATM 54 C C4 CAA . . . J 2 -9.59 -28.525 -35.924 1 104.39 ? C4 CAA 301 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 54 #