data_4PZT # _model_server_result.job_id b7d2XgTMO1yenxeuS-_VtQ _model_server_result.datetime_utc '2024-11-16 14:23:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pzt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1703}' # _entry.id 4PZT # _exptl.entry_id 4PZT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PZT _cell.length_a 63.681 _cell.length_b 63.681 _cell.length_c 104.122 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PZT _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 4PZT _atom_sites.fract_transf_matrix[1][1] 0.015703 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015703 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009604 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SOP A 1 1701 700 SOP O1A . C 3 DMS A 1 1702 501 DMS DMS . D 3 DMS A 1 1703 1 DMS DMS . E 3 DMS A 1 1704 1 DMS DMS . F 4 HOH A 1 1801 1 HOH HOH . F 4 HOH A 2 1802 2 HOH HOH . F 4 HOH A 3 1803 3 HOH HOH . F 4 HOH A 4 1804 4 HOH HOH . F 4 HOH A 5 1805 5 HOH HOH . F 4 HOH A 6 1806 6 HOH HOH . F 4 HOH A 7 1807 7 HOH HOH . F 4 HOH A 8 1808 8 HOH HOH . F 4 HOH A 9 1809 9 HOH HOH . F 4 HOH A 10 1810 10 HOH HOH . F 4 HOH A 11 1811 11 HOH HOH . F 4 HOH A 12 1812 12 HOH HOH . F 4 HOH A 13 1813 13 HOH HOH . F 4 HOH A 14 1814 14 HOH HOH . F 4 HOH A 15 1815 15 HOH HOH . F 4 HOH A 16 1816 16 HOH HOH . F 4 HOH A 17 1817 17 HOH HOH . F 4 HOH A 18 1818 18 HOH HOH . F 4 HOH A 19 1819 19 HOH HOH . F 4 HOH A 20 1820 20 HOH HOH . F 4 HOH A 21 1821 21 HOH HOH . F 4 HOH A 22 1822 22 HOH HOH . F 4 HOH A 23 1823 23 HOH HOH . F 4 HOH A 24 1824 24 HOH HOH . F 4 HOH A 25 1825 25 HOH HOH . F 4 HOH A 26 1826 26 HOH HOH . F 4 HOH A 27 1827 27 HOH HOH . F 4 HOH A 28 1828 28 HOH HOH . F 4 HOH A 29 1829 29 HOH HOH . F 4 HOH A 30 1830 30 HOH HOH . F 4 HOH A 31 1831 31 HOH HOH . F 4 HOH A 32 1832 32 HOH HOH . F 4 HOH A 33 1833 33 HOH HOH . F 4 HOH A 34 1834 34 HOH HOH . F 4 HOH A 35 1835 35 HOH HOH . F 4 HOH A 36 1836 36 HOH HOH . F 4 HOH A 37 1837 37 HOH HOH . F 4 HOH A 38 1838 38 HOH HOH . F 4 HOH A 39 1839 39 HOH HOH . F 4 HOH A 40 1840 40 HOH HOH . F 4 HOH A 41 1841 41 HOH HOH . F 4 HOH A 42 1842 42 HOH HOH . F 4 HOH A 43 1843 43 HOH HOH . F 4 HOH A 44 1844 44 HOH HOH . F 4 HOH A 45 1845 45 HOH HOH . F 4 HOH A 46 1846 46 HOH HOH . F 4 HOH A 47 1847 47 HOH HOH . F 4 HOH A 48 1848 48 HOH HOH . F 4 HOH A 49 1849 49 HOH HOH . F 4 HOH A 50 1850 50 HOH HOH . F 4 HOH A 51 1851 51 HOH HOH . F 4 HOH A 52 1852 52 HOH HOH . F 4 HOH A 53 1853 53 HOH HOH . F 4 HOH A 54 1854 54 HOH HOH . F 4 HOH A 55 1855 55 HOH HOH . F 4 HOH A 56 1856 56 HOH HOH . F 4 HOH A 57 1857 57 HOH HOH . F 4 HOH A 58 1858 58 HOH HOH . F 4 HOH A 59 1859 59 HOH HOH . F 4 HOH A 60 1860 60 HOH HOH . F 4 HOH A 61 1861 61 HOH HOH . F 4 HOH A 62 1862 62 HOH HOH . F 4 HOH A 63 1863 63 HOH HOH . F 4 HOH A 64 1864 64 HOH HOH . F 4 HOH A 65 1865 65 HOH HOH . F 4 HOH A 66 1866 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 7.701 -7.497 -10.511 1 59.6 ? S DMS 1703 A 1 HETATM 2 O O DMS . . . D 3 8.118 -8.684 -9.785 1 54.8 ? O DMS 1703 A 1 HETATM 3 C C1 DMS . . . D 3 7.346 -5.989 -9.662 1 45.68 ? C1 DMS 1703 A 1 HETATM 4 C C2 DMS . . . D 3 7.848 -7.506 -12.264 1 51.63 ? C2 DMS 1703 A 1 HETATM 5 H H11 DMS . . . D 3 6.458 -5.684 -9.904 1 54.82 ? H11 DMS 1703 A 1 HETATM 6 H H12 DMS . . . D 3 7.388 -6.14 -8.705 1 54.82 ? H12 DMS 1703 A 1 HETATM 7 H H13 DMS . . . D 3 7.999 -5.316 -9.912 1 54.82 ? H13 DMS 1703 A 1 HETATM 8 H H21 DMS . . . D 3 8.505 -6.847 -12.537 1 61.96 ? H21 DMS 1703 A 1 HETATM 9 H H22 DMS . . . D 3 6.989 -7.29 -12.661 1 61.96 ? H22 DMS 1703 A 1 HETATM 10 H H23 DMS . . . D 3 8.129 -8.385 -12.56 1 61.96 ? H23 DMS 1703 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 10 #