data_4PZW # _model_server_result.job_id qRyKGxfOMkxu4yfmv56tNQ _model_server_result.datetime_utc '2024-11-22 03:08:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4pzw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 4PZW # _exptl.entry_id 4PZW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 371.818 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(4R,4a'S,10a'S)-7'-(5-chloropyridin-3-yl)-3',4',4a',10a'-tetrahydro-1'H-spiro[1,3-oxazole-4,5'-pyrano[3,4-b]chromen]-2-amine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4PZW _cell.length_a 75.17 _cell.length_b 103.94 _cell.length_c 99.73 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PZW _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 161 A CYS 216 1_555 A SG CYS 365 A CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 223 A CYS 278 1_555 A SG CYS 388 A CYS 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 275 A CYS 330 1_555 A SG CYS 325 A CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc1 A ND1 HIS 402 A HIS 457 1_555 B NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc2 A NE2 HIS 404 A HIS 459 1_555 B NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? # _chem_comp.formula 'C19 H18 Cl N3 O3' _chem_comp.formula_weight 371.818 _chem_comp.id 2X4 _chem_comp.mon_nstd_flag . _chem_comp.name "(4R,4a'S,10a'S)-7'-(5-chloropyridin-3-yl)-3',4',4a',10a'-tetrahydro-1'H-spiro[1,3-oxazole-4,5'-pyrano[3,4-b]chromen]-2-amine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C6 2X4 sing 1 n n C1 O2 2X4 sing 2 n n C18 O17 2X4 sing 3 n n C18 C10 2X4 sing 4 n n C6 C5 2X4 sing 5 n n C5 C10 2X4 sing 6 n n C5 C4 2X4 sing 7 n n O2 C3 2X4 sing 8 n n C3 C4 2X4 sing 9 n n O17 C16 2X4 sing 10 n n O7 C4 2X4 sing 11 n n O7 C8 2X4 sing 12 n n C10 C9 2X4 sing 13 n n C10 N15 2X4 sing 14 n n C8 C9 2X4 doub 15 n y C8 C11 2X4 sing 16 n y C9 C14 2X4 sing 17 n y C11 C12 2X4 doub 18 n y C14 C13 2X4 doub 19 n y C24 N23 2X4 doub 20 n y C24 C19 2X4 sing 21 n y C12 C13 2X4 sing 22 n y C13 C19 2X4 sing 23 n n C16 N15 2X4 doub 24 n n C16 N25 2X4 sing 25 n n N23 C22 2X4 sing 26 n y C19 C20 2X4 doub 27 n y C22 C21 2X4 doub 28 n y C20 C21 2X4 sing 29 n y C21 CL1 2X4 sing 30 n n C1 H1 2X4 sing 31 n n C1 H2 2X4 sing 32 n n C3 H3 2X4 sing 33 n n C3 H4 2X4 sing 34 n n C4 H5 2X4 sing 35 n n C5 H6 2X4 sing 36 n n C6 H7 2X4 sing 37 n n C6 H8 2X4 sing 38 n n C11 H9 2X4 sing 39 n n C12 H10 2X4 sing 40 n n C14 H11 2X4 sing 41 n n C18 H12 2X4 sing 42 n n C18 H13 2X4 sing 43 n n C20 H14 2X4 sing 44 n n C22 H15 2X4 sing 45 n n C24 H16 2X4 sing 46 n n N25 H17 2X4 sing 47 n n N25 H18 2X4 sing 48 n n # _atom_sites.entry_id 4PZW _atom_sites.fract_transf_matrix[1][1] 0.013303 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010027 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 501 1 NI NI . C 3 2X4 A 1 502 1 2X4 SM1 . D 4 HOH A 1 601 1 HOH HOH . D 4 HOH A 2 602 2 HOH HOH . D 4 HOH A 3 603 3 HOH HOH . D 4 HOH A 4 604 4 HOH HOH . D 4 HOH A 5 605 5 HOH HOH . D 4 HOH A 6 606 6 HOH HOH . D 4 HOH A 7 607 7 HOH HOH . D 4 HOH A 8 608 8 HOH HOH . D 4 HOH A 9 609 9 HOH HOH . D 4 HOH A 10 610 10 HOH HOH . D 4 HOH A 11 611 11 HOH HOH . D 4 HOH A 12 612 12 HOH HOH . D 4 HOH A 13 613 13 HOH HOH . D 4 HOH A 14 614 14 HOH HOH . D 4 HOH A 15 615 15 HOH HOH . D 4 HOH A 16 616 16 HOH HOH . D 4 HOH A 17 617 17 HOH HOH . D 4 HOH A 18 618 18 HOH HOH . D 4 HOH A 19 619 19 HOH HOH . D 4 HOH A 20 620 20 HOH HOH . D 4 HOH A 21 621 21 HOH HOH . D 4 HOH A 22 622 22 HOH HOH . D 4 HOH A 23 623 23 HOH HOH . D 4 HOH A 24 624 24 HOH HOH . D 4 HOH A 25 625 25 HOH HOH . D 4 HOH A 26 626 26 HOH HOH . D 4 HOH A 27 627 27 HOH HOH . D 4 HOH A 28 628 28 HOH HOH . D 4 HOH A 29 629 29 HOH HOH . D 4 HOH A 30 630 30 HOH HOH . D 4 HOH A 31 631 31 HOH HOH . D 4 HOH A 32 632 32 HOH HOH . D 4 HOH A 33 633 33 HOH HOH . D 4 HOH A 34 634 34 HOH HOH . D 4 HOH A 35 635 35 HOH HOH . D 4 HOH A 36 636 36 HOH HOH . D 4 HOH A 37 637 37 HOH HOH . D 4 HOH A 38 638 38 HOH HOH . D 4 HOH A 39 639 39 HOH HOH . D 4 HOH A 40 640 40 HOH HOH . D 4 HOH A 41 641 41 HOH HOH . D 4 HOH A 42 642 42 HOH HOH . D 4 HOH A 43 643 43 HOH HOH . D 4 HOH A 44 644 44 HOH HOH . D 4 HOH A 45 645 45 HOH HOH . D 4 HOH A 46 646 46 HOH HOH . D 4 HOH A 47 647 47 HOH HOH . D 4 HOH A 48 648 48 HOH HOH . D 4 HOH A 49 649 49 HOH HOH . D 4 HOH A 50 650 50 HOH HOH . D 4 HOH A 51 651 51 HOH HOH . D 4 HOH A 52 652 52 HOH HOH . D 4 HOH A 53 653 53 HOH HOH . D 4 HOH A 54 654 54 HOH HOH . D 4 HOH A 55 655 55 HOH HOH . D 4 HOH A 56 656 56 HOH HOH . D 4 HOH A 57 657 57 HOH HOH . D 4 HOH A 58 658 58 HOH HOH . D 4 HOH A 59 659 59 HOH HOH . D 4 HOH A 60 660 60 HOH HOH . D 4 HOH A 61 661 61 HOH HOH . D 4 HOH A 62 662 62 HOH HOH . D 4 HOH A 63 663 63 HOH HOH . D 4 HOH A 64 664 64 HOH HOH . D 4 HOH A 65 665 65 HOH HOH . D 4 HOH A 66 666 66 HOH HOH . D 4 HOH A 67 667 67 HOH HOH . D 4 HOH A 68 668 68 HOH HOH . D 4 HOH A 69 669 69 HOH HOH . D 4 HOH A 70 670 70 HOH HOH . D 4 HOH A 71 671 71 HOH HOH . D 4 HOH A 72 672 72 HOH HOH . D 4 HOH A 73 673 73 HOH HOH . D 4 HOH A 74 674 74 HOH HOH . D 4 HOH A 75 675 75 HOH HOH . D 4 HOH A 76 676 76 HOH HOH . D 4 HOH A 77 677 77 HOH HOH . D 4 HOH A 78 678 78 HOH HOH . D 4 HOH A 79 679 79 HOH HOH . D 4 HOH A 80 680 80 HOH HOH . D 4 HOH A 81 681 81 HOH HOH . D 4 HOH A 82 682 82 HOH HOH . D 4 HOH A 83 683 83 HOH HOH . D 4 HOH A 84 684 84 HOH HOH . D 4 HOH A 85 685 85 HOH HOH . D 4 HOH A 86 686 86 HOH HOH . D 4 HOH A 87 687 87 HOH HOH . D 4 HOH A 88 688 88 HOH HOH . D 4 HOH A 89 689 89 HOH HOH . D 4 HOH A 90 690 90 HOH HOH . D 4 HOH A 91 691 91 HOH HOH . D 4 HOH A 92 692 92 HOH HOH . D 4 HOH A 93 693 93 HOH HOH . D 4 HOH A 94 694 94 HOH HOH . D 4 HOH A 95 695 95 HOH HOH . D 4 HOH A 96 696 96 HOH HOH . D 4 HOH A 97 697 97 HOH HOH . D 4 HOH A 98 698 98 HOH HOH . D 4 HOH A 99 699 99 HOH HOH . D 4 HOH A 100 700 100 HOH HOH . D 4 HOH A 101 701 101 HOH HOH . D 4 HOH A 102 702 102 HOH HOH . D 4 HOH A 103 703 103 HOH HOH . D 4 HOH A 104 704 104 HOH HOH . D 4 HOH A 105 705 105 HOH HOH . D 4 HOH A 106 706 106 HOH HOH . D 4 HOH A 107 707 107 HOH HOH . D 4 HOH A 108 708 108 HOH HOH . D 4 HOH A 109 709 109 HOH HOH . D 4 HOH A 110 710 110 HOH HOH . D 4 HOH A 111 711 111 HOH HOH . D 4 HOH A 112 712 112 HOH HOH . D 4 HOH A 113 713 113 HOH HOH . D 4 HOH A 114 714 114 HOH HOH . D 4 HOH A 115 715 115 HOH HOH . D 4 HOH A 116 716 116 HOH HOH . D 4 HOH A 117 717 117 HOH HOH . D 4 HOH A 118 718 118 HOH HOH . D 4 HOH A 119 719 119 HOH HOH . D 4 HOH A 120 720 120 HOH HOH . D 4 HOH A 121 721 121 HOH HOH . D 4 HOH A 122 722 122 HOH HOH . D 4 HOH A 123 723 123 HOH HOH . D 4 HOH A 124 724 124 HOH HOH . D 4 HOH A 125 725 125 HOH HOH . D 4 HOH A 126 726 126 HOH HOH . D 4 HOH A 127 727 127 HOH HOH . D 4 HOH A 128 728 128 HOH HOH . D 4 HOH A 129 729 129 HOH HOH . D 4 HOH A 130 730 130 HOH HOH . D 4 HOH A 131 731 131 HOH HOH . D 4 HOH A 132 732 132 HOH HOH . D 4 HOH A 133 733 133 HOH HOH . D 4 HOH A 134 734 134 HOH HOH . D 4 HOH A 135 735 135 HOH HOH . D 4 HOH A 136 736 136 HOH HOH . D 4 HOH A 137 737 137 HOH HOH . D 4 HOH A 138 738 138 HOH HOH . D 4 HOH A 139 739 139 HOH HOH . D 4 HOH A 140 740 140 HOH HOH . D 4 HOH A 141 741 141 HOH HOH . D 4 HOH A 142 742 142 HOH HOH . D 4 HOH A 143 743 143 HOH HOH . D 4 HOH A 144 744 144 HOH HOH . D 4 HOH A 145 745 145 HOH HOH . D 4 HOH A 146 746 146 HOH HOH . D 4 HOH A 147 747 147 HOH HOH . D 4 HOH A 148 748 148 HOH HOH . D 4 HOH A 149 749 149 HOH HOH . D 4 HOH A 150 750 150 HOH HOH . D 4 HOH A 151 751 151 HOH HOH . D 4 HOH A 152 752 152 HOH HOH . D 4 HOH A 153 753 153 HOH HOH . D 4 HOH A 154 754 154 HOH HOH . D 4 HOH A 155 755 155 HOH HOH . D 4 HOH A 156 756 156 HOH HOH . D 4 HOH A 157 757 157 HOH HOH . D 4 HOH A 158 758 158 HOH HOH . D 4 HOH A 159 759 159 HOH HOH . D 4 HOH A 160 760 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 2X4 . . . C 3 21.037 11.591 7.1 1 22.6 ? C1 2X4 502 A 1 HETATM 2 O O2 2X4 . . . C 3 21.684 10.607 7.906 1 23.22 ? O2 2X4 502 A 1 HETATM 3 C C3 2X4 . . . C 3 23.107 10.617 7.914 1 23.44 ? C3 2X4 502 A 1 HETATM 4 C C4 2X4 . . . C 3 23.597 11.977 8.457 1 22.66 ? C4 2X4 502 A 1 HETATM 5 C C5 2X4 . . . C 3 22.915 13.175 7.743 1 22.11 ? C5 2X4 502 A 1 HETATM 6 C C6 2X4 . . . C 3 21.377 13.007 7.614 1 22.56 ? C6 2X4 502 A 1 HETATM 7 O O7 2X4 . . . C 3 24.997 12.043 8.233 1 23.58 ? O7 2X4 502 A 1 HETATM 8 C C8 2X4 . . . C 3 25.618 13.216 8.568 1 23.6 ? C8 2X4 502 A 1 HETATM 9 C C9 2X4 . . . C 3 24.896 14.44 8.643 1 22.36 ? C9 2X4 502 A 1 HETATM 10 C C10 2X4 . . . C 3 23.393 14.531 8.317 1 21.89 ? C10 2X4 502 A 1 HETATM 11 C C11 2X4 . . . C 3 27.008 13.167 8.853 1 23.74 ? C11 2X4 502 A 1 HETATM 12 C C12 2X4 . . . C 3 27.696 14.35 9.217 1 24.45 ? C12 2X4 502 A 1 HETATM 13 C C13 2X4 . . . C 3 26.982 15.576 9.289 1 24.24 ? C13 2X4 502 A 1 HETATM 14 C C14 2X4 . . . C 3 25.589 15.617 9.007 1 23.74 ? C14 2X4 502 A 1 HETATM 15 N N15 2X4 . . . C 3 22.61 14.845 9.498 1 21.77 ? N15 2X4 502 A 1 HETATM 16 C C16 2X4 . . . C 3 22.051 16.051 9.365 1 21.32 ? C16 2X4 502 A 1 HETATM 17 O O17 2X4 . . . C 3 22.221 16.609 8.139 1 21.27 ? O17 2X4 502 A 1 HETATM 18 C C18 2X4 . . . C 3 23.1 15.749 7.402 1 21.86 ? C18 2X4 502 A 1 HETATM 19 C C19 2X4 . . . C 3 27.624 16.777 9.654 1 24.5 ? C19 2X4 502 A 1 HETATM 20 C C20 2X4 . . . C 3 26.987 17.656 10.569 1 23.7 ? C20 2X4 502 A 1 HETATM 21 C C21 2X4 . . . C 3 27.639 18.867 10.906 1 24.75 ? C21 2X4 502 A 1 HETATM 22 C C22 2X4 . . . C 3 28.907 19.144 10.334 1 25.78 ? C22 2X4 502 A 1 HETATM 23 N N23 2X4 . . . C 3 29.505 18.299 9.465 1 26.68 ? N23 2X4 502 A 1 HETATM 24 C C24 2X4 . . . C 3 28.89 17.144 9.125 1 25.52 ? C24 2X4 502 A 1 HETATM 25 N N25 2X4 . . . C 3 21.176 16.612 10.207 1 20.86 ? N25 2X4 502 A 1 HETATM 26 CL CL1 2X4 . . . C 3 26.907 19.969 11.997 1 25.53 ? CL1 2X4 502 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 26 #