data_4Q0B # _model_server_result.job_id ZGQCkhLEv1M8FhSiVHC7kg _model_server_result.datetime_utc '2024-11-16 10:54:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q0b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":901}' # _entry.id 4Q0B # _exptl.entry_id 4Q0B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.298 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.69 _cell.angle_gamma 90 _cell.entry_id 4Q0B _cell.length_a 89.716 _cell.length_b 131.051 _cell.length_c 141.631 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q0B _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA pentameric 5 author_and_software_defined_assembly 1 PISA pentameric 5 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,K,L 1 1 C,D,H,I,J,M,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 445 A ASP 443 1_555 L MN MN . A MN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc2 A O GLY 446 A GLY 444 1_555 L MN MN . A MN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc3 C OD2 ASP 445 C ASP 443 1_555 N MN MN . C MN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc4 C OD1 ASP 445 C ASP 443 1_555 N MN MN . C MN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? hydrog WATSON-CRICK hydrog1 E N1 G 7 T G 7 1_555 G N3 DC 20 P DC 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 E N2 G 7 T G 7 1_555 G O2 DC 20 P DC 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 E O6 G 7 T G 7 1_555 G N4 DC 20 P DC 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 E N1 G 8 T G 8 1_555 G N3 DC 19 P DC 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 E N2 G 8 T G 8 1_555 G O2 DC 19 P DC 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 E O6 G 8 T G 8 1_555 G N4 DC 19 P DC 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-DC PAIR' hydrog7 E N1 G 8 T G 8 1_555 G O2 DC 20 P DC 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-DG PAIR' hydrog8 E O2 C 9 T C 9 1_555 G N2 DG 18 P DG 819 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 E N1 G 10 T G 10 1_555 G N3 DC 17 P DC 818 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 E N2 G 10 T G 10 1_555 G O2 DC 17 P DC 818 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 E O6 G 10 T G 10 1_555 G N4 DC 17 P DC 818 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 E N3 C 11 T C 11 1_555 G N1 DG 16 P DG 817 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 E N4 C 11 T C 11 1_555 G O6 DG 16 P DG 817 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 E O2 C 11 T C 11 1_555 G N2 DG 16 P DG 817 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 E N3 C 12 T C 12 1_555 G N1 DG 15 P DG 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 E N4 C 12 T C 12 1_555 G O6 DG 15 P DG 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 E O2 C 12 T C 12 1_555 G N2 DG 15 P DG 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 E N3 C 13 T C 13 1_555 G N1 DG 14 P DG 815 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 E N4 C 13 T C 13 1_555 G O6 DG 14 P DG 815 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 E O2 C 13 T C 13 1_555 G N2 DG 14 P DG 815 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 E N1 G 14 T G 14 1_555 G N3 DC 13 P DC 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 E N2 G 14 T G 14 1_555 G O2 DC 13 P DC 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 E O6 G 14 T G 14 1_555 G N4 DC 13 P DC 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 H N1 G 7 E G 7 1_555 I N3 DC 20 F DC 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 H N2 G 7 E G 7 1_555 I O2 DC 20 F DC 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 H O6 G 7 E G 7 1_555 I N4 DC 20 F DC 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 H N1 G 8 E G 8 1_555 I N3 DC 19 F DC 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 H N2 G 8 E G 8 1_555 I O2 DC 19 F DC 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 H O6 G 8 E G 8 1_555 I N4 DC 19 F DC 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 H N3 C 9 E C 9 1_555 I N1 DG 18 F DG 819 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 H N4 C 9 E C 9 1_555 I O6 DG 18 F DG 819 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 H O2 C 9 E C 9 1_555 I N2 DG 18 F DG 819 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 H N1 G 10 E G 10 1_555 I N3 DC 17 F DC 818 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 H N2 G 10 E G 10 1_555 I O2 DC 17 F DC 818 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 H O6 G 10 E G 10 1_555 I N4 DC 17 F DC 818 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 H N3 C 11 E C 11 1_555 I N1 DG 16 F DG 817 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 H N4 C 11 E C 11 1_555 I O6 DG 16 F DG 817 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 H O2 C 11 E C 11 1_555 I N2 DG 16 F DG 817 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 H N3 C 12 E C 12 1_555 I N1 DG 15 F DG 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 H N4 C 12 E C 12 1_555 I O6 DG 15 F DG 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 H O2 C 12 E C 12 1_555 I N2 DG 15 F DG 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 H N3 C 13 E C 13 1_555 I N1 DG 14 F DG 815 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 H N4 C 13 E C 13 1_555 I O6 DG 14 F DG 815 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 H O2 C 13 E C 13 1_555 I N2 DG 14 F DG 815 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C15 H14 N4 O' _chem_comp.formula_weight 266.298 _chem_comp.id NVP _chem_comp.mon_nstd_flag . _chem_comp.name "11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'NON-NUCLEOSIDE RT INHIBITOR NEVIRAPINE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA NVP sing 499 n n N1 C2 NVP sing 500 n n N1 C15 NVP sing 501 n n CA CB NVP sing 502 n n CA CC NVP sing 503 n n CA HCA NVP sing 504 n n CB CC NVP sing 505 n n CB HCB1 NVP sing 506 n n CB HCB2 NVP sing 507 n n CC HCC1 NVP sing 508 n n CC HCC2 NVP sing 509 n n N3 C4 NVP doub 510 n y N3 C2 NVP sing 511 n y C4 C5 NVP sing 512 n y C4 HC4 NVP sing 513 n n C5 C6 NVP doub 514 n y C5 HC5 NVP sing 515 n n C6 CD NVP sing 516 n n C6 C7 NVP sing 517 n y CD HCD1 NVP sing 518 n n CD HCD2 NVP sing 519 n n CD HCD3 NVP sing 520 n n C2 C7 NVP doub 521 n y C7 N8 NVP sing 522 n n N8 C9 NVP sing 523 n n N8 HN8 NVP sing 524 n n C9 OE NVP doub 525 n n C9 C10 NVP sing 526 n n C10 C15 NVP doub 527 n y C10 C11 NVP sing 528 n y C15 N14 NVP sing 529 n y C11 C12 NVP doub 530 n y C11 H11 NVP sing 531 n n C12 C13 NVP sing 532 n y C12 H12 NVP sing 533 n n C13 N14 NVP doub 534 n y C13 H13 NVP sing 535 n n # _atom_sites.entry_id 4Q0B _atom_sites.fract_transf_matrix[1][1] 0.011146 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002104 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 6 NVP A 1 901 901 NVP NVP . L 7 MN A 1 902 902 MN MN . M 6 NVP C 1 901 901 NVP NVP . N 7 MN C 1 902 902 MN MN . O 8 SO4 e 1 801 801 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NVP . . . K 6 41.809 51.685 48.955 1 70 ? N1 NVP 901 A 1 HETATM 2 C CA NVP . . . K 6 42.768 50.561 48.852 1 72.91 ? CA NVP 901 A 1 HETATM 3 C CB NVP . . . K 6 44.198 50.934 48.54 1 78.88 ? CB NVP 901 A 1 HETATM 4 C CC NVP . . . K 6 43.339 50.324 47.471 1 76.17 ? CC NVP 901 A 1 HETATM 5 N N3 NVP . . . K 6 40.141 50.177 48.191 1 69.09 ? N3 NVP 901 A 1 HETATM 6 C C4 NVP . . . K 6 38.855 49.912 47.71 1 64.83 ? C4 NVP 901 A 1 HETATM 7 C C5 NVP . . . K 6 37.978 50.94 47.383 1 64.76 ? C5 NVP 901 A 1 HETATM 8 C C6 NVP . . . K 6 38.369 52.262 47.53 1 73.02 ? C6 NVP 901 A 1 HETATM 9 C CD NVP . . . K 6 37.379 53.35 47.161 1 76.32 ? CD NVP 901 A 1 HETATM 10 C C2 NVP . . . K 6 40.545 51.515 48.323 1 73.5 ? C2 NVP 901 A 1 HETATM 11 C C7 NVP . . . K 6 39.665 52.537 48.001 1 75.52 ? C7 NVP 901 A 1 HETATM 12 N N8 NVP . . . K 6 39.988 53.907 48.146 1 72.08 ? N8 NVP 901 A 1 HETATM 13 C C9 NVP . . . K 6 40.298 54.384 49.352 1 69.94 ? C9 NVP 901 A 1 HETATM 14 O OE NVP . . . K 6 39.763 55.468 49.69 1 78.56 ? OE NVP 901 A 1 HETATM 15 C C10 NVP . . . K 6 41.181 53.674 50.32 1 67.47 ? C10 NVP 901 A 1 HETATM 16 C C15 NVP . . . K 6 41.848 52.485 50.119 1 69.03 ? C15 NVP 901 A 1 HETATM 17 C C11 NVP . . . K 6 41.261 54.357 51.518 1 72.96 ? C11 NVP 901 A 1 HETATM 18 C C12 NVP . . . K 6 42.042 53.825 52.532 1 79.39 ? C12 NVP 901 A 1 HETATM 19 C C13 NVP . . . K 6 42.719 52.62 52.351 1 79.38 ? C13 NVP 901 A 1 HETATM 20 N N14 NVP . . . K 6 42.616 51.933 51.141 1 75.57 ? N14 NVP 901 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #