data_4Q0D
#
_model_server_result.job_id            5ZqCqB6fOGQtSnt4fiBl3g 
_model_server_result.datetime_utc      '2024-11-05 05:28:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4q0d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
#
_entry.id    4Q0D 
#
_exptl.entry_id    4Q0D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.92 
_cell.angle_gamma         90 
_cell.entry_id            4Q0D 
_cell.length_a            213.611 
_cell.length_b            115.031 
_cell.length_c            217.643 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Q0D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,G,H,I,J,K,L,M 1 1 
C,D,N,O,P,Q,R,S,T,U 2 1 
E,V,W,X,Y 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -213.611 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 J N N 
? 2 N N N 
? 2 R N N 
? 2 V N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 343 n n 
PA O2A NDP sing 344 n n 
PA O5B NDP sing 345 n n 
PA O3 NDP sing 346 n n 
O2A HOA2 NDP sing 347 n n 
O5B C5B NDP sing 348 n n 
C5B C4B NDP sing 349 n n 
C5B H51A NDP sing 350 n n 
C5B H52A NDP sing 351 n n 
C4B O4B NDP sing 352 n n 
C4B C3B NDP sing 353 n n 
C4B H4B NDP sing 354 n n 
O4B C1B NDP sing 355 n n 
C3B O3B NDP sing 356 n n 
C3B C2B NDP sing 357 n n 
C3B H3B NDP sing 358 n n 
O3B HO3A NDP sing 359 n n 
C2B O2B NDP sing 360 n n 
C2B C1B NDP sing 361 n n 
C2B H2B NDP sing 362 n n 
O2B P2B NDP sing 363 n n 
C1B N9A NDP sing 364 n n 
C1B H1B NDP sing 365 n n 
N9A C8A NDP sing 366 n y 
N9A C4A NDP sing 367 n y 
C8A N7A NDP doub 368 n y 
C8A H8A NDP sing 369 n n 
N7A C5A NDP sing 370 n y 
C5A C6A NDP sing 371 n y 
C5A C4A NDP doub 372 n y 
C6A N6A NDP sing 373 n n 
C6A N1A NDP doub 374 n y 
N6A H61A NDP sing 375 n n 
N6A H62A NDP sing 376 n n 
N1A C2A NDP sing 377 n y 
C2A N3A NDP doub 378 n y 
C2A H2A NDP sing 379 n n 
N3A C4A NDP sing 380 n y 
O3 PN NDP sing 381 n n 
PN O1N NDP doub 382 n n 
PN O2N NDP sing 383 n n 
PN O5D NDP sing 384 n n 
O2N H21N NDP sing 385 n n 
O5D C5D NDP sing 386 n n 
C5D C4D NDP sing 387 n n 
C5D H51N NDP sing 388 n n 
C5D H52N NDP sing 389 n n 
C4D O4D NDP sing 390 n n 
C4D C3D NDP sing 391 n n 
C4D H4D NDP sing 392 n n 
O4D C1D NDP sing 393 n n 
C3D O3D NDP sing 394 n n 
C3D C2D NDP sing 395 n n 
C3D H3D NDP sing 396 n n 
O3D HO3N NDP sing 397 n n 
C2D O2D NDP sing 398 n n 
C2D C1D NDP sing 399 n n 
C2D H2D NDP sing 400 n n 
O2D HO2N NDP sing 401 n n 
C1D N1N NDP sing 402 n n 
C1D H1D NDP sing 403 n n 
N1N C2N NDP sing 404 n n 
N1N C6N NDP sing 405 n n 
C2N C3N NDP doub 406 n n 
C2N H2N NDP sing 407 n n 
C3N C7N NDP sing 408 n n 
C3N C4N NDP sing 409 n n 
C7N O7N NDP doub 410 n n 
C7N N7N NDP sing 411 n n 
N7N H71N NDP sing 412 n n 
N7N H72N NDP sing 413 n n 
C4N C5N NDP sing 414 n n 
C4N H41N NDP sing 415 n n 
C4N H42N NDP sing 416 n n 
C5N C6N NDP doub 417 n n 
C5N H5N NDP sing 418 n n 
C6N H6N NDP sing 419 n n 
P2B O1X NDP doub 420 n n 
P2B O2X NDP sing 421 n n 
P2B O3X NDP sing 422 n n 
O2X HOP2 NDP sing 423 n n 
O3X HOP3 NDP sing 424 n n 
#
_atom_sites.entry_id                     4Q0D 
_atom_sites.fract_transf_matrix[1][1]    0.004681 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000321 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008693 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004605 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NDP E 1 601 207 NDP NDP . 
G 3 UFP E 1 602 1 UFP UFP . 
H 4 2XB E 1 603 1 2XB 2XB . 
I 5 MTX E 1 604 161 MTX MTX . 
J 2 NDP A 1 601 207 NDP NDP . 
K 3 UFP A 1 602 1 UFP UFP . 
L 4 2XB A 1 603 1 2XB 2XB . 
M 5 MTX A 1 604 161 MTX MTX . 
N 2 NDP B 1 601 207 NDP NDP . 
O 3 UFP B 1 602 1 UFP UFP . 
P 4 2XB B 1 603 1 2XB 2XB . 
Q 5 MTX B 1 604 161 MTX MTX . 
R 2 NDP C 1 601 207 NDP NDP . 
S 3 UFP C 1 602 1 UFP UFP . 
T 4 2XB C 1 603 1 2XB 2XB . 
U 5 MTX C 1 604 161 MTX MTX . 
V 2 NDP D 1 601 207 NDP NDP . 
W 3 UFP D 1 602 1 UFP UFP . 
X 4 2XB D 1 603 1 2XB 2XB . 
Y 5 MTX D 1 604 161 MTX MTX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . F 2 -58.204 -22.574 82.721 1 63.52 ? PA NDP 601 E 1 
HETATM 2 O O1A NDP . . . F 2 -56.964 -22.775 83.569 1 59.67 ? O1A NDP 601 E 1 
HETATM 3 O O2A NDP . . . F 2 -58.067 -21.303 81.931 1 68.49 ? O2A NDP 601 E 1 
HETATM 4 O O5B NDP . . . F 2 -58.373 -23.755 81.752 1 67.76 ? O5B NDP 601 E 1 
HETATM 5 C C5B NDP . . . F 2 -58.245 -25.077 82.205 1 65.98 ? C5B NDP 601 E 1 
HETATM 6 C C4B NDP . . . F 2 -58.34 -26.151 81.202 1 70.84 ? C4B NDP 601 E 1 
HETATM 7 O O4B NDP . . . F 2 -57.068 -26.437 80.661 1 70.38 ? O4B NDP 601 E 1 
HETATM 8 C C3B NDP . . . F 2 -58.792 -27.416 81.784 1 72.18 ? C3B NDP 601 E 1 
HETATM 9 O O3B NDP . . . F 2 -60.171 -27.49 81.847 1 74.17 ? O3B NDP 601 E 1 
HETATM 10 C C2B NDP . . . F 2 -58.267 -28.389 80.857 1 73.24 ? C2B NDP 601 E 1 
HETATM 11 O O2B NDP . . . F 2 -59.068 -28.457 79.711 1 74.44 ? O2B NDP 601 E 1 
HETATM 12 C C1B NDP . . . F 2 -56.965 -27.843 80.513 1 71.42 ? C1B NDP 601 E 1 
HETATM 13 N N9A NDP . . . F 2 -56.003 -28.361 81.423 1 74.89 ? N9A NDP 601 E 1 
HETATM 14 C C8A NDP . . . F 2 -55.673 -27.825 82.624 1 70.07 ? C8A NDP 601 E 1 
HETATM 15 N N7A NDP . . . F 2 -54.733 -28.593 83.213 1 68.37 ? N7A NDP 601 E 1 
HETATM 16 C C5A NDP . . . F 2 -54.452 -29.647 82.376 1 72.39 ? C5A NDP 601 E 1 
HETATM 17 C C6A NDP . . . F 2 -53.575 -30.76 82.438 1 71.76 ? C6A NDP 601 E 1 
HETATM 18 N N6A NDP . . . F 2 -52.703 -30.947 83.625 1 80.13 ? N6A NDP 601 E 1 
HETATM 19 N N1A NDP . . . F 2 -53.529 -31.654 81.412 1 71.67 ? N1A NDP 601 E 1 
HETATM 20 C C2A NDP . . . F 2 -54.335 -31.469 80.331 1 73.47 ? C2A NDP 601 E 1 
HETATM 21 N N3A NDP . . . F 2 -55.177 -30.436 80.228 1 73 ? N3A NDP 601 E 1 
HETATM 22 C C4A NDP . . . F 2 -55.258 -29.499 81.245 1 72.56 ? C4A NDP 601 E 1 
HETATM 23 O O3 NDP . . . F 2 -59.497 -22.463 83.639 1 70.93 ? O3 NDP 601 E 1 
HETATM 24 P PN NDP . . . F 2 -59.563 -21.389 84.804 1 72.26 ? PN NDP 601 E 1 
HETATM 25 O O1N NDP . . . F 2 -60.865 -21.566 85.596 1 73.63 ? O1N NDP 601 E 1 
HETATM 26 O O2N NDP . . . F 2 -58.376 -21.578 85.724 1 62.58 ? O2N NDP 601 E 1 
HETATM 27 O O5D NDP . . . F 2 -59.528 -19.903 84.161 1 68.49 ? O5D NDP 601 E 1 
HETATM 28 C C5D NDP . . . F 2 -60.709 -19.307 83.694 1 71.93 ? C5D NDP 601 E 1 
HETATM 29 C C4D NDP . . . F 2 -61.017 -17.984 84.207 1 78.93 ? C4D NDP 601 E 1 
HETATM 30 O O4D NDP . . . F 2 -59.799 -17.281 84.454 1 74.28 ? O4D NDP 601 E 1 
HETATM 31 C C3D NDP . . . F 2 -61.757 -17.185 83.222 1 69.7 ? C3D NDP 601 E 1 
HETATM 32 O O3D NDP . . . F 2 -62.614 -16.315 83.888 1 67.73 ? O3D NDP 601 E 1 
HETATM 33 C C2D NDP . . . F 2 -60.737 -16.434 82.571 1 73.23 ? C2D NDP 601 E 1 
HETATM 34 O O2D NDP . . . F 2 -61.265 -15.283 81.991 1 72.64 ? O2D NDP 601 E 1 
HETATM 35 C C1D NDP . . . F 2 -59.846 -16.111 83.704 1 70.61 ? C1D NDP 601 E 1 
HETATM 36 N N1N NDP . . . F 2 -58.554 -15.673 83.258 1 70.48 ? N1N NDP 601 E 1 
HETATM 37 C C2N NDP . . . F 2 -58.079 -14.512 83.742 1 64.46 ? C2N NDP 601 E 1 
HETATM 38 C C3N NDP . . . F 2 -56.828 -14.012 83.355 1 64.11 ? C3N NDP 601 E 1 
HETATM 39 C C7N NDP . . . F 2 -56.341 -12.693 83.938 1 64.77 ? C7N NDP 601 E 1 
HETATM 40 O O7N NDP . . . F 2 -55.248 -12.229 83.577 1 64.36 ? O7N NDP 601 E 1 
HETATM 41 N N7N NDP . . . F 2 -57.114 -11.964 84.903 1 62.62 ? N7N NDP 601 E 1 
HETATM 42 C C4N NDP . . . F 2 -56.052 -14.744 82.436 1 68.24 ? C4N NDP 601 E 1 
HETATM 43 C C5N NDP . . . F 2 -56.576 -15.95 81.948 1 69.79 ? C5N NDP 601 E 1 
HETATM 44 C C6N NDP . . . F 2 -57.825 -16.408 82.361 1 71.02 ? C6N NDP 601 E 1 
HETATM 45 P P2B NDP . . . F 2 -59.739 -29.793 79.257 1 68.37 ? P2B NDP 601 E 1 
HETATM 46 O O1X NDP . . . F 2 -61.248 -29.725 79.548 1 77.2 ? O1X NDP 601 E 1 
HETATM 47 O O2X NDP . . . F 2 -59.536 -29.968 77.807 1 69.41 ? O2X NDP 601 E 1 
HETATM 48 O O3X NDP . . . F 2 -59.154 -30.961 79.982 1 72.06 ? O3X NDP 601 E 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    64 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           48 
#