data_4Q0D # _model_server_result.job_id bsha7WHFMQ_qg42qMZdsRA _model_server_result.datetime_utc '2024-11-29 06:03:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q0d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":601}' # _entry.id 4Q0D # _exptl.entry_id 4Q0D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.92 _cell.angle_gamma 90 _cell.entry_id 4Q0D _cell.length_a 213.611 _cell.length_b 115.031 _cell.length_c 217.643 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q0D _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,J,K,L,M 1 1 C,D,N,O,P,Q,R,S,T,U 2 1 E,V,W,X,Y 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -213.611 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 J N N ? 2 N N N ? 2 R N N ? 2 V N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 343 n n PA O2A NDP sing 344 n n PA O5B NDP sing 345 n n PA O3 NDP sing 346 n n O2A HOA2 NDP sing 347 n n O5B C5B NDP sing 348 n n C5B C4B NDP sing 349 n n C5B H51A NDP sing 350 n n C5B H52A NDP sing 351 n n C4B O4B NDP sing 352 n n C4B C3B NDP sing 353 n n C4B H4B NDP sing 354 n n O4B C1B NDP sing 355 n n C3B O3B NDP sing 356 n n C3B C2B NDP sing 357 n n C3B H3B NDP sing 358 n n O3B HO3A NDP sing 359 n n C2B O2B NDP sing 360 n n C2B C1B NDP sing 361 n n C2B H2B NDP sing 362 n n O2B P2B NDP sing 363 n n C1B N9A NDP sing 364 n n C1B H1B NDP sing 365 n n N9A C8A NDP sing 366 n y N9A C4A NDP sing 367 n y C8A N7A NDP doub 368 n y C8A H8A NDP sing 369 n n N7A C5A NDP sing 370 n y C5A C6A NDP sing 371 n y C5A C4A NDP doub 372 n y C6A N6A NDP sing 373 n n C6A N1A NDP doub 374 n y N6A H61A NDP sing 375 n n N6A H62A NDP sing 376 n n N1A C2A NDP sing 377 n y C2A N3A NDP doub 378 n y C2A H2A NDP sing 379 n n N3A C4A NDP sing 380 n y O3 PN NDP sing 381 n n PN O1N NDP doub 382 n n PN O2N NDP sing 383 n n PN O5D NDP sing 384 n n O2N H21N NDP sing 385 n n O5D C5D NDP sing 386 n n C5D C4D NDP sing 387 n n C5D H51N NDP sing 388 n n C5D H52N NDP sing 389 n n C4D O4D NDP sing 390 n n C4D C3D NDP sing 391 n n C4D H4D NDP sing 392 n n O4D C1D NDP sing 393 n n C3D O3D NDP sing 394 n n C3D C2D NDP sing 395 n n C3D H3D NDP sing 396 n n O3D HO3N NDP sing 397 n n C2D O2D NDP sing 398 n n C2D C1D NDP sing 399 n n C2D H2D NDP sing 400 n n O2D HO2N NDP sing 401 n n C1D N1N NDP sing 402 n n C1D H1D NDP sing 403 n n N1N C2N NDP sing 404 n n N1N C6N NDP sing 405 n n C2N C3N NDP doub 406 n n C2N H2N NDP sing 407 n n C3N C7N NDP sing 408 n n C3N C4N NDP sing 409 n n C7N O7N NDP doub 410 n n C7N N7N NDP sing 411 n n N7N H71N NDP sing 412 n n N7N H72N NDP sing 413 n n C4N C5N NDP sing 414 n n C4N H41N NDP sing 415 n n C4N H42N NDP sing 416 n n C5N C6N NDP doub 417 n n C5N H5N NDP sing 418 n n C6N H6N NDP sing 419 n n P2B O1X NDP doub 420 n n P2B O2X NDP sing 421 n n P2B O3X NDP sing 422 n n O2X HOP2 NDP sing 423 n n O3X HOP3 NDP sing 424 n n # _atom_sites.entry_id 4Q0D _atom_sites.fract_transf_matrix[1][1] 0.004681 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000321 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008693 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004605 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NDP E 1 601 207 NDP NDP . G 3 UFP E 1 602 1 UFP UFP . H 4 2XB E 1 603 1 2XB 2XB . I 5 MTX E 1 604 161 MTX MTX . J 2 NDP A 1 601 207 NDP NDP . K 3 UFP A 1 602 1 UFP UFP . L 4 2XB A 1 603 1 2XB 2XB . M 5 MTX A 1 604 161 MTX MTX . N 2 NDP B 1 601 207 NDP NDP . O 3 UFP B 1 602 1 UFP UFP . P 4 2XB B 1 603 1 2XB 2XB . Q 5 MTX B 1 604 161 MTX MTX . R 2 NDP C 1 601 207 NDP NDP . S 3 UFP C 1 602 1 UFP UFP . T 4 2XB C 1 603 1 2XB 2XB . U 5 MTX C 1 604 161 MTX MTX . V 2 NDP D 1 601 207 NDP NDP . W 3 UFP D 1 602 1 UFP UFP . X 4 2XB D 1 603 1 2XB 2XB . Y 5 MTX D 1 604 161 MTX MTX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . V 2 -112.784 6.953 37.95 1 92.3 ? PA NDP 601 D 1 HETATM 2 O O1A NDP . . . V 2 -113.748 7.154 36.8 1 88.45 ? O1A NDP 601 D 1 HETATM 3 O O2A NDP . . . V 2 -111.508 6.363 37.422 1 97.27 ? O2A NDP 601 D 1 HETATM 4 O O5B NDP . . . V 2 -112.477 8.3 38.618 1 96.54 ? O5B NDP 601 D 1 HETATM 5 C C5B NDP . . . V 2 -113.512 9.202 38.897 1 94.76 ? C5B NDP 601 D 1 HETATM 6 C C4B NDP . . . V 2 -113.189 10.388 39.706 1 99.62 ? C4B NDP 601 D 1 HETATM 7 O O4B NDP . . . V 2 -112.927 11.506 38.882 1 99.16 ? O4B NDP 601 D 1 HETATM 8 C C3B NDP . . . V 2 -114.316 10.79 40.549 1 100.96 ? C3B NDP 601 D 1 HETATM 9 O O3B NDP . . . V 2 -114.306 10.101 41.748 1 102.95 ? O3B NDP 601 D 1 HETATM 10 C C2B NDP . . . V 2 -114.072 12.196 40.757 1 102.02 ? C2B NDP 601 D 1 HETATM 11 O O2B NDP . . . V 2 -113.1 12.364 41.752 1 103.22 ? O2B NDP 601 D 1 HETATM 12 C C1B NDP . . . V 2 -113.544 12.638 39.475 1 100.2 ? C1B NDP 601 D 1 HETATM 13 N N9A NDP . . . V 2 -114.6 13.097 38.636 1 103.67 ? N9A NDP 601 D 1 HETATM 14 C C8A NDP . . . V 2 -115.367 12.316 37.835 1 98.85 ? C8A NDP 601 D 1 HETATM 15 N N7A NDP . . . V 2 -116.265 13.084 37.185 1 97.15 ? N7A NDP 601 D 1 HETATM 16 C C5A NDP . . . V 2 -116.077 14.391 37.572 1 101.17 ? C5A NDP 601 D 1 HETATM 17 C C6A NDP . . . V 2 -116.697 15.625 37.244 1 100.54 ? C6A NDP 601 D 1 HETATM 18 N N6A NDP . . . V 2 -117.82 15.654 36.273 1 108.91 ? N6A NDP 601 D 1 HETATM 19 N N1A NDP . . . V 2 -116.265 16.784 37.818 1 100.45 ? N1A NDP 601 D 1 HETATM 20 C C2A NDP . . . V 2 -115.235 16.744 38.707 1 102.25 ? C2A NDP 601 D 1 HETATM 21 N N3A NDP . . . V 2 -114.622 15.604 39.045 1 101.78 ? N3A NDP 601 D 1 HETATM 22 C C4A NDP . . . V 2 -115.023 14.398 38.49 1 101.34 ? C4A NDP 601 D 1 HETATM 23 O O3 NDP . . . V 2 -113.404 5.966 39.033 1 99.71 ? O3 NDP 601 D 1 HETATM 24 P PN NDP . . . V 2 -114.16 4.634 38.616 1 101.04 ? PN NDP 601 D 1 HETATM 25 O O1N NDP . . . V 2 -114.685 3.931 39.872 1 102.41 ? O1N NDP 601 D 1 HETATM 26 O O2N NDP . . . V 2 -115.324 4.976 37.71 1 91.36 ? O2N NDP 601 D 1 HETATM 27 O O5D NDP . . . V 2 -113.136 3.643 37.845 1 97.27 ? O5D NDP 601 D 1 HETATM 28 C C5D NDP . . . V 2 -112.182 2.91 38.568 1 100.71 ? C5D NDP 601 D 1 HETATM 29 C C4D NDP . . . V 2 -112.125 1.473 38.348 1 107.71 ? C4D NDP 601 D 1 HETATM 30 O O4D NDP . . . V 2 -112.077 1.202 36.947 1 103.06 ? O4D NDP 601 D 1 HETATM 31 C C3D NDP . . . V 2 -110.907 0.892 38.929 1 98.48 ? C3D NDP 601 D 1 HETATM 32 O O3D NDP . . . V 2 -111.173 -0.394 39.388 1 96.51 ? O3D NDP 601 D 1 HETATM 33 C C2D NDP . . . V 2 -109.996 0.83 37.835 1 102.01 ? C2D NDP 601 D 1 HETATM 34 O O2D NDP . . . V 2 -109.083 -0.202 38.035 1 101.42 ? O2D NDP 601 D 1 HETATM 35 C C1D NDP . . . V 2 -110.878 0.551 36.68 1 99.39 ? C1D NDP 601 D 1 HETATM 36 N N1N NDP . . . V 2 -110.297 1.002 35.448 1 99.26 ? N1N NDP 601 D 1 HETATM 37 C C2N NDP . . . V 2 -110.259 0.146 34.413 1 93.24 ? C2N NDP 601 D 1 HETATM 38 C C3N NDP . . . V 2 -109.708 0.516 33.178 1 92.89 ? C3N NDP 601 D 1 HETATM 39 C C7N NDP . . . V 2 -109.691 -0.497 32.042 1 93.55 ? C7N NDP 601 D 1 HETATM 40 O O7N NDP . . . V 2 -109.258 -0.162 30.929 1 93.14 ? O7N NDP 601 D 1 HETATM 41 N N7N NDP . . . V 2 -110.166 -1.838 32.231 1 91.4 ? N7N NDP 601 D 1 HETATM 42 C C4N NDP . . . V 2 -109.183 1.813 33.016 1 97.02 ? C4N NDP 601 D 1 HETATM 43 C C5N NDP . . . V 2 -109.24 2.681 34.116 1 98.57 ? C5N NDP 601 D 1 HETATM 44 C C6N NDP . . . V 2 -109.796 2.272 35.326 1 99.8 ? C6N NDP 601 D 1 HETATM 45 P P2B NDP . . . V 2 -113.18 13.503 42.82 1 97.15 ? P2B NDP 601 D 1 HETATM 46 O O1X NDP . . . V 2 -113.684 12.917 44.152 1 105.98 ? O1X NDP 601 D 1 HETATM 47 O O2X NDP . . . V 2 -111.831 14.065 43.017 1 98.19 ? O2X NDP 601 D 1 HETATM 48 O O3X NDP . . . V 2 -114.101 14.593 42.378 1 100.84 ? O3X NDP 601 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 68 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #