data_4Q0D
#
_model_server_result.job_id            UE9LDRd7wYUw7jUNQonVQg 
_model_server_result.datetime_utc      '2024-11-05 05:41:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4q0d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":603}' 
#
_entry.id    4Q0D 
#
_exptl.entry_id    4Q0D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              413.384 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-{4-[(2-amino-4-hydroxy-7H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzoyl}-L-glutamic acid' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.92 
_cell.angle_gamma         90 
_cell.entry_id            4Q0D 
_cell.length_a            213.611 
_cell.length_b            115.031 
_cell.length_c            217.643 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Q0D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,G,H,I,J,K,L,M 1 1 
C,D,N,O,P,Q,R,S,T,U 2 1 
E,V,W,X,Y 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -213.611 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 L N N 
? 4 P N N 
? 4 T N N 
? 4 X N N 
#
_chem_comp.formula           'C19 H19 N5 O6' 
_chem_comp.formula_weight    413.384 
_chem_comp.id                2XB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-{4-[(2-amino-4-hydroxy-7H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzoyl}-L-glutamic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OT1 CT5 2XB doub 1 n n 
CT5 CT1 2XB sing 2 n n 
CT5 OXT 2XB sing 3 n n 
NAA CAW 2XB sing 4 n n 
CT1 CT2 2XB sing 5 n n 
CT1 NT1 2XB sing 6 n n 
CT2 CT3 2XB sing 7 n n 
CAW NAS 2XB sing 8 n y 
CAW NAP 2XB doub 9 n y 
OAD CAV 2XB doub 10 n n 
NAS CBA 2XB doub 11 n y 
OE2 CT4 2XB doub 12 n n 
NT1 CAV 2XB sing 13 n n 
CAV CAY 2XB sing 14 n n 
CT3 CT4 2XB sing 15 n n 
NAP CBB 2XB sing 16 n y 
CT4 OE1 2XB sing 17 n n 
CAJ CAY 2XB doub 18 n y 
CAJ CAH 2XB sing 19 n y 
CBA OAE 2XB sing 20 n n 
CBA CBC 2XB sing 21 n y 
CAY CAK 2XB sing 22 n y 
CBB CBC 2XB doub 23 n y 
CBB NAR 2XB sing 24 n y 
CAH CAX 2XB doub 25 n y 
CBC CAZ 2XB sing 26 n y 
CAK CAI 2XB doub 27 n y 
NAR CAL 2XB sing 28 n y 
CAX CAI 2XB sing 29 n y 
CAX CAO 2XB sing 30 n n 
CAZ CAL 2XB doub 31 n y 
CAZ CAO 2XB sing 32 n n 
OE1 H1 2XB sing 33 n n 
CT3 H2 2XB sing 34 n n 
CT2 H3 2XB sing 35 n n 
CT1 H4 2XB sing 36 n n 
OXT H5 2XB sing 37 n n 
NT1 H6 2XB sing 38 n n 
CAJ H7 2XB sing 39 n n 
CAH H8 2XB sing 40 n n 
CAK H9 2XB sing 41 n n 
CAI H10 2XB sing 42 n n 
CAO H11 2XB sing 43 n n 
CAO H12 2XB sing 44 n n 
NAA H14 2XB sing 45 n n 
NAA H15 2XB sing 46 n n 
NAR H16 2XB sing 47 n n 
CAL H17 2XB sing 48 n n 
CT3 H18 2XB sing 49 n n 
CT2 H19 2XB sing 50 n n 
OAE H20 2XB sing 51 n n 
#
_atom_sites.entry_id                     4Q0D 
_atom_sites.fract_transf_matrix[1][1]    0.004681 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000321 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008693 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004605 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NDP E 1 601 207 NDP NDP . 
G 3 UFP E 1 602 1 UFP UFP . 
H 4 2XB E 1 603 1 2XB 2XB . 
I 5 MTX E 1 604 161 MTX MTX . 
J 2 NDP A 1 601 207 NDP NDP . 
K 3 UFP A 1 602 1 UFP UFP . 
L 4 2XB A 1 603 1 2XB 2XB . 
M 5 MTX A 1 604 161 MTX MTX . 
N 2 NDP B 1 601 207 NDP NDP . 
O 3 UFP B 1 602 1 UFP UFP . 
P 4 2XB B 1 603 1 2XB 2XB . 
Q 5 MTX B 1 604 161 MTX MTX . 
R 2 NDP C 1 601 207 NDP NDP . 
S 3 UFP C 1 602 1 UFP UFP . 
T 4 2XB C 1 603 1 2XB 2XB . 
U 5 MTX C 1 604 161 MTX MTX . 
V 2 NDP D 1 601 207 NDP NDP . 
W 3 UFP D 1 602 1 UFP UFP . 
X 4 2XB D 1 603 1 2XB 2XB . 
Y 5 MTX D 1 604 161 MTX MTX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OE1 2XB . . . L 4 -25.279 43.123 87.227 1 77.01 ? OE1 2XB 603 A 1 
HETATM 2 C CT4 2XB . . . L 4 -24.91 42.345 86.307 1 78.48 ? CT4 2XB 603 A 1 
HETATM 3 O OE2 2XB . . . L 4 -24 42.693 85.51 1 74.8 ? OE2 2XB 603 A 1 
HETATM 4 C CT3 2XB . . . L 4 -25.553 41.008 86.156 1 80.93 ? CT3 2XB 603 A 1 
HETATM 5 C CT2 2XB . . . L 4 -26.028 40.582 84.809 1 83.82 ? CT2 2XB 603 A 1 
HETATM 6 C CT1 2XB . . . L 4 -26.936 39.406 84.679 1 91.37 ? CT1 2XB 603 A 1 
HETATM 7 C CT5 2XB . . . L 4 -26.39 38.167 84.049 1 83.22 ? CT5 2XB 603 A 1 
HETATM 8 O OT1 2XB . . . L 4 -26.341 38.066 82.795 1 80.71 ? OT1 2XB 603 A 1 
HETATM 9 O OXT 2XB . . . L 4 -25.971 37.22 84.766 1 81.44 ? OXT 2XB 603 A 1 
HETATM 10 N NT1 2XB . . . L 4 -28.093 39.307 85.522 1 97.18 ? NT1 2XB 603 A 1 
HETATM 11 C CAV 2XB . . . L 4 -28.938 40.429 85.822 1 90.92 ? CAV 2XB 603 A 1 
HETATM 12 O OAD 2XB . . . L 4 -28.692 41.532 85.361 1 94.79 ? OAD 2XB 603 A 1 
HETATM 13 C CAY 2XB . . . L 4 -30.127 40.251 86.713 1 81.99 ? CAY 2XB 603 A 1 
HETATM 14 C CAJ 2XB . . . L 4 -31.242 41.064 86.555 1 82.1 ? CAJ 2XB 603 A 1 
HETATM 15 C CAH 2XB . . . L 4 -32.339 40.896 87.389 1 76.5 ? CAH 2XB 603 A 1 
HETATM 16 C CAK 2XB . . . L 4 -30.111 39.273 87.702 1 77.65 ? CAK 2XB 603 A 1 
HETATM 17 C CAI 2XB . . . L 4 -31.215 39.103 88.531 1 75.7 ? CAI 2XB 603 A 1 
HETATM 18 C CAX 2XB . . . L 4 -32.326 39.915 88.369 1 76.57 ? CAX 2XB 603 A 1 
HETATM 19 C CAO 2XB . . . L 4 -33.509 39.73 89.268 1 77.43 ? CAO 2XB 603 A 1 
HETATM 20 C CAZ 2XB . . . L 4 -34.742 40.29 88.633 1 73.23 ? CAZ 2XB 603 A 1 
HETATM 21 C CBC 2XB . . . L 4 -35.379 39.783 87.465 1 74.07 ? CBC 2XB 603 A 1 
HETATM 22 C CBA 2XB . . . L 4 -35.125 38.692 86.572 1 72.93 ? CBA 2XB 603 A 1 
HETATM 23 O OAE 2XB . . . L 4 -34.049 37.862 86.776 1 75.29 ? OAE 2XB 603 A 1 
HETATM 24 N NAS 2XB . . . L 4 -35.974 38.471 85.489 1 69.45 ? NAS 2XB 603 A 1 
HETATM 25 C CAW 2XB . . . L 4 -37.111 39.351 85.274 1 74.54 ? CAW 2XB 603 A 1 
HETATM 26 N NAA 2XB . . . L 4 -37.996 39.143 84.17 1 83.29 ? NAA 2XB 603 A 1 
HETATM 27 N NAP 2XB . . . L 4 -37.321 40.408 86.174 1 76.95 ? NAP 2XB 603 A 1 
HETATM 28 C CBB 2XB . . . L 4 -36.47 40.609 87.24 1 74.96 ? CBB 2XB 603 A 1 
HETATM 29 N NAR 2XB . . . L 4 -36.508 41.6 88.244 1 81.43 ? NAR 2XB 603 A 1 
HETATM 30 C CAL 2XB . . . L 4 -35.432 41.394 89.104 1 75.13 ? CAL 2XB 603 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    40 
_model_server_stats.query_time_ms           350 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           30 
#