data_4Q0D
#
_model_server_result.job_id            1dMvIT9Z_KmXaaV22t426g 
_model_server_result.datetime_utc      '2024-11-05 05:35:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4q0d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":603}' 
#
_entry.id    4Q0D 
#
_exptl.entry_id    4Q0D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              413.384 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-{4-[(2-amino-4-hydroxy-7H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzoyl}-L-glutamic acid' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.92 
_cell.angle_gamma         90 
_cell.entry_id            4Q0D 
_cell.length_a            213.611 
_cell.length_b            115.031 
_cell.length_c            217.643 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Q0D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,G,H,I,J,K,L,M 1 1 
C,D,N,O,P,Q,R,S,T,U 2 1 
E,V,W,X,Y 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -213.611 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 L N N 
? 4 P N N 
? 4 T N N 
? 4 X N N 
#
_chem_comp.formula           'C19 H19 N5 O6' 
_chem_comp.formula_weight    413.384 
_chem_comp.id                2XB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-{4-[(2-amino-4-hydroxy-7H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzoyl}-L-glutamic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OT1 CT5 2XB doub 1 n n 
CT5 CT1 2XB sing 2 n n 
CT5 OXT 2XB sing 3 n n 
NAA CAW 2XB sing 4 n n 
CT1 CT2 2XB sing 5 n n 
CT1 NT1 2XB sing 6 n n 
CT2 CT3 2XB sing 7 n n 
CAW NAS 2XB sing 8 n y 
CAW NAP 2XB doub 9 n y 
OAD CAV 2XB doub 10 n n 
NAS CBA 2XB doub 11 n y 
OE2 CT4 2XB doub 12 n n 
NT1 CAV 2XB sing 13 n n 
CAV CAY 2XB sing 14 n n 
CT3 CT4 2XB sing 15 n n 
NAP CBB 2XB sing 16 n y 
CT4 OE1 2XB sing 17 n n 
CAJ CAY 2XB doub 18 n y 
CAJ CAH 2XB sing 19 n y 
CBA OAE 2XB sing 20 n n 
CBA CBC 2XB sing 21 n y 
CAY CAK 2XB sing 22 n y 
CBB CBC 2XB doub 23 n y 
CBB NAR 2XB sing 24 n y 
CAH CAX 2XB doub 25 n y 
CBC CAZ 2XB sing 26 n y 
CAK CAI 2XB doub 27 n y 
NAR CAL 2XB sing 28 n y 
CAX CAI 2XB sing 29 n y 
CAX CAO 2XB sing 30 n n 
CAZ CAL 2XB doub 31 n y 
CAZ CAO 2XB sing 32 n n 
OE1 H1 2XB sing 33 n n 
CT3 H2 2XB sing 34 n n 
CT2 H3 2XB sing 35 n n 
CT1 H4 2XB sing 36 n n 
OXT H5 2XB sing 37 n n 
NT1 H6 2XB sing 38 n n 
CAJ H7 2XB sing 39 n n 
CAH H8 2XB sing 40 n n 
CAK H9 2XB sing 41 n n 
CAI H10 2XB sing 42 n n 
CAO H11 2XB sing 43 n n 
CAO H12 2XB sing 44 n n 
NAA H14 2XB sing 45 n n 
NAA H15 2XB sing 46 n n 
NAR H16 2XB sing 47 n n 
CAL H17 2XB sing 48 n n 
CT3 H18 2XB sing 49 n n 
CT2 H19 2XB sing 50 n n 
OAE H20 2XB sing 51 n n 
#
_atom_sites.entry_id                     4Q0D 
_atom_sites.fract_transf_matrix[1][1]    0.004681 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000321 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008693 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004605 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NDP E 1 601 207 NDP NDP . 
G 3 UFP E 1 602 1 UFP UFP . 
H 4 2XB E 1 603 1 2XB 2XB . 
I 5 MTX E 1 604 161 MTX MTX . 
J 2 NDP A 1 601 207 NDP NDP . 
K 3 UFP A 1 602 1 UFP UFP . 
L 4 2XB A 1 603 1 2XB 2XB . 
M 5 MTX A 1 604 161 MTX MTX . 
N 2 NDP B 1 601 207 NDP NDP . 
O 3 UFP B 1 602 1 UFP UFP . 
P 4 2XB B 1 603 1 2XB 2XB . 
Q 5 MTX B 1 604 161 MTX MTX . 
R 2 NDP C 1 601 207 NDP NDP . 
S 3 UFP C 1 602 1 UFP UFP . 
T 4 2XB C 1 603 1 2XB 2XB . 
U 5 MTX C 1 604 161 MTX MTX . 
V 2 NDP D 1 601 207 NDP NDP . 
W 3 UFP D 1 602 1 UFP UFP . 
X 4 2XB D 1 603 1 2XB 2XB . 
Y 5 MTX D 1 604 161 MTX MTX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OE1 2XB . . . X 4 -125.819 -33.323 18.927 1 115.73 ? OE1 2XB 603 D 1 
HETATM 2 C CT4 2XB . . . X 4 -125.999 -32.076 18.931 1 117.2 ? CT4 2XB 603 D 1 
HETATM 3 O OE2 2XB . . . X 4 -126.677 -31.539 19.846 1 113.52 ? OE2 2XB 603 D 1 
HETATM 4 C CT3 2XB . . . X 4 -125.409 -31.235 17.85 1 119.65 ? CT3 2XB 603 D 1 
HETATM 5 C CT2 2XB . . . X 4 -126.309 -30.395 17.01 1 122.54 ? CT2 2XB 603 D 1 
HETATM 6 C CT1 2XB . . . X 4 -125.791 -29.77 15.758 1 130.09 ? CT1 2XB 603 D 1 
HETATM 7 C CT5 2XB . . . X 4 -125.598 -28.291 15.736 1 121.94 ? CT5 2XB 603 D 1 
HETATM 8 O OT1 2XB . . . X 4 -126.533 -27.539 15.356 1 119.43 ? OT1 2XB 603 D 1 
HETATM 9 O OXT 2XB . . . X 4 -124.499 -27.792 16.097 1 120.16 ? OXT 2XB 603 D 1 
HETATM 10 N NT1 2XB . . . X 4 -125.104 -30.558 14.774 1 135.9 ? NT1 2XB 603 D 1 
HETATM 11 C CAV 2XB . . . X 4 -125.368 -31.948 14.531 1 129.64 ? CAV 2XB 603 D 1 
HETATM 12 O OAD 2XB . . . X 4 -126.213 -32.558 15.168 1 133.51 ? OAD 2XB 603 D 1 
HETATM 13 C CAY 2XB . . . X 4 -124.587 -32.666 13.481 1 120.71 ? CAY 2XB 603 D 1 
HETATM 14 C CAJ 2XB . . . X 4 -125.252 -33.368 12.485 1 120.82 ? CAJ 2XB 603 D 1 
HETATM 15 C CAH 2XB . . . X 4 -124.521 -34.035 11.513 1 115.22 ? CAH 2XB 603 D 1 
HETATM 16 C CAK 2XB . . . X 4 -123.198 -32.624 13.51 1 116.37 ? CAK 2XB 603 D 1 
HETATM 17 C CAI 2XB . . . X 4 -122.471 -33.291 12.531 1 114.42 ? CAI 2XB 603 D 1 
HETATM 18 C CAX 2XB . . . X 4 -123.136 -33.992 11.536 1 115.29 ? CAX 2XB 603 D 1 
HETATM 19 C CAO 2XB . . . X 4 -122.328 -34.704 10.497 1 116.15 ? CAO 2XB 603 D 1 
HETATM 20 C CAZ 2XB . . . X 4 -123.175 -35.395 9.474 1 111.95 ? CAZ 2XB 603 D 1 
HETATM 21 C CBC 2XB . . . X 4 -123.92 -34.76 8.44 1 112.79 ? CBC 2XB 603 D 1 
HETATM 22 C CBA 2XB . . . X 4 -124.131 -33.401 8.044 1 111.65 ? CBA 2XB 603 D 1 
HETATM 23 O OAE 2XB . . . X 4 -123.524 -32.376 8.731 1 114.01 ? OAE 2XB 603 D 1 
HETATM 24 N NAS 2XB . . . X 4 -124.953 -33.118 6.952 1 108.17 ? NAS 2XB 603 D 1 
HETATM 25 C CAW 2XB . . . X 4 -125.592 -34.207 6.227 1 113.26 ? CAW 2XB 603 D 1 
HETATM 26 N NAA 2XB . . . X 4 -126.439 -33.944 5.106 1 122.01 ? NAA 2XB 603 D 1 
HETATM 27 N NAP 2XB . . . X 4 -125.356 -35.524 6.654 1 115.67 ? NAP 2XB 603 D 1 
HETATM 28 C CBB 2XB . . . X 4 -124.54 -35.783 7.735 1 113.68 ? CBB 2XB 603 D 1 
HETATM 29 N NAR 2XB . . . X 4 -124.183 -37.019 8.313 1 120.15 ? NAR 2XB 603 D 1 
HETATM 30 C CAL 2XB . . . X 4 -123.333 -36.768 9.388 1 113.85 ? CAL 2XB 603 D 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    47 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           30 
#