data_4Q0D
#
_model_server_result.job_id            VmY71T-XA99W7kmMw_4SRQ 
_model_server_result.datetime_utc      '2024-11-05 05:39:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4q0d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":604}' 
#
_entry.id    4Q0D 
#
_exptl.entry_id    4Q0D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              454.439 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            METHOTREXATE 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.92 
_cell.angle_gamma         90 
_cell.entry_id            4Q0D 
_cell.length_a            213.611 
_cell.length_b            115.031 
_cell.length_c            217.643 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Q0D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,G,H,I,J,K,L,M 1 1 
C,D,N,O,P,Q,R,S,T,U 2 1 
E,V,W,X,Y 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -213.611 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 M N N 
? 5 Q N N 
? 5 U N N 
? 5 Y N N 
#
_chem_comp.formula           'C20 H22 N8 O5' 
_chem_comp.formula_weight    454.439 
_chem_comp.id                MTX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              METHOTREXATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 MTX doub 286 n y 
N1 C8A MTX sing 287 n y 
C2 NA2 MTX sing 288 n n 
C2 N3 MTX sing 289 n y 
NA2 HN21 MTX sing 290 n n 
NA2 HN22 MTX sing 291 n n 
N3 C4 MTX doub 292 n y 
C4 NA4 MTX sing 293 n n 
C4 C4A MTX sing 294 n y 
NA4 HN41 MTX sing 295 n n 
NA4 HN42 MTX sing 296 n n 
C4A N5 MTX sing 297 n y 
C4A C8A MTX doub 298 n y 
N5 C6 MTX doub 299 n y 
C6 C7 MTX sing 300 n y 
C6 C9 MTX sing 301 n n 
C7 N8 MTX doub 302 n y 
C7 H7 MTX sing 303 n n 
N8 C8A MTX sing 304 n y 
C9 N10 MTX sing 305 n n 
C9 H91 MTX sing 306 n n 
C9 H92 MTX sing 307 n n 
N10 CM MTX sing 308 n n 
N10 C14 MTX sing 309 n n 
CM HM1 MTX sing 310 n n 
CM HM2 MTX sing 311 n n 
CM HM3 MTX sing 312 n n 
C11 C12 MTX doub 313 n y 
C11 C16 MTX sing 314 n y 
C11 C MTX sing 315 n n 
C12 C13 MTX sing 316 n y 
C12 H12 MTX sing 317 n n 
C13 C14 MTX doub 318 n y 
C13 H13 MTX sing 319 n n 
C14 C15 MTX sing 320 n y 
C15 C16 MTX doub 321 n y 
C15 H15 MTX sing 322 n n 
C16 H16 MTX sing 323 n n 
C O MTX doub 324 n n 
C N MTX sing 325 n n 
N CA MTX sing 326 n n 
N HN MTX sing 327 n n 
CA CT MTX sing 328 n n 
CA CB MTX sing 329 n n 
CA HA MTX sing 330 n n 
CT O1 MTX doub 331 n n 
CT O2 MTX sing 332 n n 
O2 HO2 MTX sing 333 n n 
CB CG MTX sing 334 n n 
CB HB1 MTX sing 335 n n 
CB HB2 MTX sing 336 n n 
CG CD MTX sing 337 n n 
CG HG1 MTX sing 338 n n 
CG HG2 MTX sing 339 n n 
CD OE1 MTX doub 340 n n 
CD OE2 MTX sing 341 n n 
OE2 HOE2 MTX sing 342 n n 
#
_atom_sites.entry_id                     4Q0D 
_atom_sites.fract_transf_matrix[1][1]    0.004681 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000321 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008693 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004605 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NDP E 1 601 207 NDP NDP . 
G 3 UFP E 1 602 1 UFP UFP . 
H 4 2XB E 1 603 1 2XB 2XB . 
I 5 MTX E 1 604 161 MTX MTX . 
J 2 NDP A 1 601 207 NDP NDP . 
K 3 UFP A 1 602 1 UFP UFP . 
L 4 2XB A 1 603 1 2XB 2XB . 
M 5 MTX A 1 604 161 MTX MTX . 
N 2 NDP B 1 601 207 NDP NDP . 
O 3 UFP B 1 602 1 UFP UFP . 
P 4 2XB B 1 603 1 2XB 2XB . 
Q 5 MTX B 1 604 161 MTX MTX . 
R 2 NDP C 1 601 207 NDP NDP . 
S 3 UFP C 1 602 1 UFP UFP . 
T 4 2XB C 1 603 1 2XB 2XB . 
U 5 MTX C 1 604 161 MTX MTX . 
V 2 NDP D 1 601 207 NDP NDP . 
W 3 UFP D 1 602 1 UFP UFP . 
X 4 2XB D 1 603 1 2XB 2XB . 
Y 5 MTX D 1 604 161 MTX MTX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MTX . . . M 5 -1.884 13.628 93.461 1 62.08 ? N1 MTX 604 A 1 
HETATM 2 C C2 MTX . . . M 5 -2.742 12.928 92.697 1 60.31 ? C2 MTX 604 A 1 
HETATM 3 N NA2 MTX . . . M 5 -4.14 13.269 92.737 1 65.29 ? NA2 MTX 604 A 1 
HETATM 4 N N3 MTX . . . M 5 -2.338 11.924 91.901 1 64.28 ? N3 MTX 604 A 1 
HETATM 5 C C4 MTX . . . M 5 -1.032 11.582 91.841 1 63.44 ? C4 MTX 604 A 1 
HETATM 6 N NA4 MTX . . . M 5 -0.585 10.517 91 1 59.36 ? NA4 MTX 604 A 1 
HETATM 7 C C4A MTX . . . M 5 -0.092 12.289 92.627 1 67.6 ? C4A MTX 604 A 1 
HETATM 8 N N5 MTX . . . M 5 1.238 11.978 92.599 1 67.44 ? N5 MTX 604 A 1 
HETATM 9 C C6 MTX . . . M 5 2.095 12.686 93.367 1 66.52 ? C6 MTX 604 A 1 
HETATM 10 C C7 MTX . . . M 5 1.655 13.727 94.193 1 70.44 ? C7 MTX 604 A 1 
HETATM 11 N N8 MTX . . . M 5 0.336 14.02 94.209 1 65.85 ? N8 MTX 604 A 1 
HETATM 12 C C8A MTX . . . M 5 -0.55 13.314 93.434 1 65.77 ? C8A MTX 604 A 1 
HETATM 13 C C9 MTX . . . M 5 3.562 12.33 93.337 1 69.85 ? C9 MTX 604 A 1 
HETATM 14 N N10 MTX . . . M 5 4.285 12.541 94.575 1 68.41 ? N10 MTX 604 A 1 
HETATM 15 C CM MTX . . . M 5 5.388 13.47 94.607 1 56.91 ? CM MTX 604 A 1 
HETATM 16 C C11 MTX . . . M 5 3.092 10.547 98.138 1 59.58 ? C11 MTX 604 A 1 
HETATM 17 C C12 MTX . . . M 5 3.778 11.757 98.193 1 60.56 ? C12 MTX 604 A 1 
HETATM 18 C C13 MTX . . . M 5 4.165 12.402 97.022 1 60.71 ? C13 MTX 604 A 1 
HETATM 19 C C14 MTX . . . M 5 3.871 11.844 95.786 1 60.36 ? C14 MTX 604 A 1 
HETATM 20 C C15 MTX . . . M 5 3.18 10.636 95.724 1 55.47 ? C15 MTX 604 A 1 
HETATM 21 C C16 MTX . . . M 5 2.79 9.992 96.9 1 60.53 ? C16 MTX 604 A 1 
HETATM 22 C C MTX . . . M 5 2.664 9.863 99.418 1 58.4 ? C MTX 604 A 1 
HETATM 23 O O MTX . . . M 5 3.115 10.26 100.48 1 65.1 ? O MTX 604 A 1 
HETATM 24 N N MTX . . . M 5 1.716 8.769 99.43 1 64.28 ? N MTX 604 A 1 
HETATM 25 C CA MTX . . . M 5 1.33 8.171 100.684 1 61.19 ? CA MTX 604 A 1 
HETATM 26 C CT MTX . . . M 5 0.883 6.782 100.438 1 63.93 ? CT MTX 604 A 1 
HETATM 27 O O1 MTX . . . M 5 0.55 6.431 99.277 1 60.44 ? O1 MTX 604 A 1 
HETATM 28 O O2 MTX . . . M 5 0.824 5.952 101.396 1 64.09 ? O2 MTX 604 A 1 
HETATM 29 C CB MTX . . . M 5 0.175 8.928 101.247 1 58.01 ? CB MTX 604 A 1 
HETATM 30 C CG MTX . . . M 5 0.416 9.997 102.272 1 57.66 ? CG MTX 604 A 1 
HETATM 31 C CD MTX . . . M 5 -0.749 10.369 103.135 1 63.7 ? CD MTX 604 A 1 
HETATM 32 O OE1 MTX . . . M 5 -1.635 9.515 103.365 1 65.01 ? OE1 MTX 604 A 1 
HETATM 33 O OE2 MTX . . . M 5 -1.003 11.583 103.345 1 65.09 ? OE2 MTX 604 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           217 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           33 
#