data_4Q0D # _model_server_result.job_id UjxrlQ1BFTq42tEkDhC_Ag _model_server_result.datetime_utc '2024-11-05 05:26:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q0d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":604}' # _entry.id 4Q0D # _exptl.entry_id 4Q0D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.439 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHOTREXATE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.92 _cell.angle_gamma 90 _cell.entry_id 4Q0D _cell.length_a 213.611 _cell.length_b 115.031 _cell.length_c 217.643 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q0D _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,J,K,L,M 1 1 C,D,N,O,P,Q,R,S,T,U 2 1 E,V,W,X,Y 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -213.611 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 M N N ? 5 Q N N ? 5 U N N ? 5 Y N N # _chem_comp.formula 'C20 H22 N8 O5' _chem_comp.formula_weight 454.439 _chem_comp.id MTX _chem_comp.mon_nstd_flag . _chem_comp.name METHOTREXATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 MTX doub 286 n y N1 C8A MTX sing 287 n y C2 NA2 MTX sing 288 n n C2 N3 MTX sing 289 n y NA2 HN21 MTX sing 290 n n NA2 HN22 MTX sing 291 n n N3 C4 MTX doub 292 n y C4 NA4 MTX sing 293 n n C4 C4A MTX sing 294 n y NA4 HN41 MTX sing 295 n n NA4 HN42 MTX sing 296 n n C4A N5 MTX sing 297 n y C4A C8A MTX doub 298 n y N5 C6 MTX doub 299 n y C6 C7 MTX sing 300 n y C6 C9 MTX sing 301 n n C7 N8 MTX doub 302 n y C7 H7 MTX sing 303 n n N8 C8A MTX sing 304 n y C9 N10 MTX sing 305 n n C9 H91 MTX sing 306 n n C9 H92 MTX sing 307 n n N10 CM MTX sing 308 n n N10 C14 MTX sing 309 n n CM HM1 MTX sing 310 n n CM HM2 MTX sing 311 n n CM HM3 MTX sing 312 n n C11 C12 MTX doub 313 n y C11 C16 MTX sing 314 n y C11 C MTX sing 315 n n C12 C13 MTX sing 316 n y C12 H12 MTX sing 317 n n C13 C14 MTX doub 318 n y C13 H13 MTX sing 319 n n C14 C15 MTX sing 320 n y C15 C16 MTX doub 321 n y C15 H15 MTX sing 322 n n C16 H16 MTX sing 323 n n C O MTX doub 324 n n C N MTX sing 325 n n N CA MTX sing 326 n n N HN MTX sing 327 n n CA CT MTX sing 328 n n CA CB MTX sing 329 n n CA HA MTX sing 330 n n CT O1 MTX doub 331 n n CT O2 MTX sing 332 n n O2 HO2 MTX sing 333 n n CB CG MTX sing 334 n n CB HB1 MTX sing 335 n n CB HB2 MTX sing 336 n n CG CD MTX sing 337 n n CG HG1 MTX sing 338 n n CG HG2 MTX sing 339 n n CD OE1 MTX doub 340 n n CD OE2 MTX sing 341 n n OE2 HOE2 MTX sing 342 n n # _atom_sites.entry_id 4Q0D _atom_sites.fract_transf_matrix[1][1] 0.004681 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000321 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008693 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004605 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NDP E 1 601 207 NDP NDP . G 3 UFP E 1 602 1 UFP UFP . H 4 2XB E 1 603 1 2XB 2XB . I 5 MTX E 1 604 161 MTX MTX . J 2 NDP A 1 601 207 NDP NDP . K 3 UFP A 1 602 1 UFP UFP . L 4 2XB A 1 603 1 2XB 2XB . M 5 MTX A 1 604 161 MTX MTX . N 2 NDP B 1 601 207 NDP NDP . O 3 UFP B 1 602 1 UFP UFP . P 4 2XB B 1 603 1 2XB 2XB . Q 5 MTX B 1 604 161 MTX MTX . R 2 NDP C 1 601 207 NDP NDP . S 3 UFP C 1 602 1 UFP UFP . T 4 2XB C 1 603 1 2XB 2XB . U 5 MTX C 1 604 161 MTX MTX . V 2 NDP D 1 601 207 NDP NDP . W 3 UFP D 1 602 1 UFP UFP . X 4 2XB D 1 603 1 2XB 2XB . Y 5 MTX D 1 604 161 MTX MTX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MTX . . . Q 5 -58.236 18.408 65.156 1 64.7 ? N1 MTX 604 B 1 HETATM 2 C C2 MTX . . . Q 5 -58.447 18.085 63.869 1 67.78 ? C2 MTX 604 B 1 HETATM 3 N NA2 MTX . . . Q 5 -59.498 17.157 63.548 1 72.34 ? NA2 MTX 604 B 1 HETATM 4 N N3 MTX . . . Q 5 -57.71 18.6 62.873 1 69.24 ? N3 MTX 604 B 1 HETATM 5 C C4 MTX . . . Q 5 -56.716 19.473 63.136 1 68.61 ? C4 MTX 604 B 1 HETATM 6 N NA4 MTX . . . Q 5 -55.933 20.02 62.074 1 66.96 ? NA4 MTX 604 B 1 HETATM 7 C C4A MTX . . . Q 5 -56.454 19.846 64.479 1 67.58 ? C4A MTX 604 B 1 HETATM 8 N N5 MTX . . . Q 5 -55.459 20.728 64.804 1 72.41 ? N5 MTX 604 B 1 HETATM 9 C C6 MTX . . . Q 5 -55.257 21.048 66.104 1 70.32 ? C6 MTX 604 B 1 HETATM 10 C C7 MTX . . . Q 5 -56.038 20.497 67.126 1 75.44 ? C7 MTX 604 B 1 HETATM 11 N N8 MTX . . . Q 5 -57.016 19.628 66.785 1 70.26 ? N8 MTX 604 B 1 HETATM 12 C C8A MTX . . . Q 5 -57.238 19.291 65.474 1 65.14 ? C8A MTX 604 B 1 HETATM 13 C C9 MTX . . . Q 5 -54.153 22.02 66.452 1 70.53 ? C9 MTX 604 B 1 HETATM 14 N N10 MTX . . . Q 5 -53.387 21.774 67.66 1 79.54 ? N10 MTX 604 B 1 HETATM 15 C CM MTX . . . Q 5 -53.307 22.786 68.683 1 76.88 ? CM MTX 604 B 1 HETATM 16 C C11 MTX . . . Q 5 -51.384 18.084 68.258 1 73.55 ? C11 MTX 604 B 1 HETATM 17 C C12 MTX . . . Q 5 -51.706 18.898 69.34 1 72.74 ? C12 MTX 604 B 1 HETATM 18 C C13 MTX . . . Q 5 -52.364 20.106 69.136 1 79.13 ? C13 MTX 604 B 1 HETATM 19 C C14 MTX . . . Q 5 -52.702 20.504 67.85 1 75.31 ? C14 MTX 604 B 1 HETATM 20 C C15 MTX . . . Q 5 -52.379 19.693 66.764 1 71.68 ? C15 MTX 604 B 1 HETATM 21 C C16 MTX . . . Q 5 -51.722 18.481 66.97 1 76.6 ? C16 MTX 604 B 1 HETATM 22 C C MTX . . . Q 5 -50.673 16.773 68.488 1 70.83 ? C MTX 604 B 1 HETATM 23 O O MTX . . . Q 5 -50.182 16.556 69.582 1 76.49 ? O MTX 604 B 1 HETATM 24 N N MTX . . . Q 5 -50.559 15.761 67.463 1 78.03 ? N MTX 604 B 1 HETATM 25 C CA MTX . . . Q 5 -49.868 14.533 67.774 1 73.82 ? CA MTX 604 B 1 HETATM 26 C CT MTX . . . Q 5 -49.186 14.051 66.552 1 79.43 ? CT MTX 604 B 1 HETATM 27 O O1 MTX . . . Q 5 -49.625 14.384 65.421 1 76.01 ? O1 MTX 604 B 1 HETATM 28 O O2 MTX . . . Q 5 -48.164 13.306 66.65 1 82.52 ? O2 MTX 604 B 1 HETATM 29 C CB MTX . . . Q 5 -50.839 13.495 68.232 1 71.97 ? CB MTX 604 B 1 HETATM 30 C CG MTX . . . Q 5 -51.358 13.564 69.638 1 78.82 ? CG MTX 604 B 1 HETATM 31 C CD MTX . . . Q 5 -51.919 12.313 70.234 1 90.82 ? CD MTX 604 B 1 HETATM 32 O OE1 MTX . . . Q 5 -51.71 11.214 69.677 1 86.04 ? OE1 MTX 604 B 1 HETATM 33 O OE2 MTX . . . Q 5 -52.736 12.384 71.186 1 91.65 ? OE2 MTX 604 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 371 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #