data_4Q0E # _model_server_result.job_id qYQTb9bCwSKXP-BLBmwUPg _model_server_result.datetime_utc '2024-11-05 05:36:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q0e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":601}' # _entry.id 4Q0E # _exptl.entry_id 4Q0E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.56 _cell.angle_gamma 90 _cell.entry_id 4Q0E _cell.length_a 213.629 _cell.length_b 115.54 _cell.length_c 217.973 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q0E _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F,G,H,I,N,O,P,Q,Z,BA 1 1 B,D,J,K,L,M,R,S,T,U,AA,CA 2 1 E,V,W,X,Y,DA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 J N N ? 2 N N N ? 2 R N N ? 2 V N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 288 n n PA O2A NDP sing 289 n n PA O5B NDP sing 290 n n PA O3 NDP sing 291 n n O2A HOA2 NDP sing 292 n n O5B C5B NDP sing 293 n n C5B C4B NDP sing 294 n n C5B H51A NDP sing 295 n n C5B H52A NDP sing 296 n n C4B O4B NDP sing 297 n n C4B C3B NDP sing 298 n n C4B H4B NDP sing 299 n n O4B C1B NDP sing 300 n n C3B O3B NDP sing 301 n n C3B C2B NDP sing 302 n n C3B H3B NDP sing 303 n n O3B HO3A NDP sing 304 n n C2B O2B NDP sing 305 n n C2B C1B NDP sing 306 n n C2B H2B NDP sing 307 n n O2B P2B NDP sing 308 n n C1B N9A NDP sing 309 n n C1B H1B NDP sing 310 n n N9A C8A NDP sing 311 n y N9A C4A NDP sing 312 n y C8A N7A NDP doub 313 n y C8A H8A NDP sing 314 n n N7A C5A NDP sing 315 n y C5A C6A NDP sing 316 n y C5A C4A NDP doub 317 n y C6A N6A NDP sing 318 n n C6A N1A NDP doub 319 n y N6A H61A NDP sing 320 n n N6A H62A NDP sing 321 n n N1A C2A NDP sing 322 n y C2A N3A NDP doub 323 n y C2A H2A NDP sing 324 n n N3A C4A NDP sing 325 n y O3 PN NDP sing 326 n n PN O1N NDP doub 327 n n PN O2N NDP sing 328 n n PN O5D NDP sing 329 n n O2N H21N NDP sing 330 n n O5D C5D NDP sing 331 n n C5D C4D NDP sing 332 n n C5D H51N NDP sing 333 n n C5D H52N NDP sing 334 n n C4D O4D NDP sing 335 n n C4D C3D NDP sing 336 n n C4D H4D NDP sing 337 n n O4D C1D NDP sing 338 n n C3D O3D NDP sing 339 n n C3D C2D NDP sing 340 n n C3D H3D NDP sing 341 n n O3D HO3N NDP sing 342 n n C2D O2D NDP sing 343 n n C2D C1D NDP sing 344 n n C2D H2D NDP sing 345 n n O2D HO2N NDP sing 346 n n C1D N1N NDP sing 347 n n C1D H1D NDP sing 348 n n N1N C2N NDP sing 349 n n N1N C6N NDP sing 350 n n C2N C3N NDP doub 351 n n C2N H2N NDP sing 352 n n C3N C7N NDP sing 353 n n C3N C4N NDP sing 354 n n C7N O7N NDP doub 355 n n C7N N7N NDP sing 356 n n N7N H71N NDP sing 357 n n N7N H72N NDP sing 358 n n C4N C5N NDP sing 359 n n C4N H41N NDP sing 360 n n C4N H42N NDP sing 361 n n C5N C6N NDP doub 362 n n C5N H5N NDP sing 363 n n C6N H6N NDP sing 364 n n P2B O1X NDP doub 365 n n P2B O2X NDP sing 366 n n P2B O3X NDP sing 367 n n O2X HOP2 NDP sing 368 n n O3X HOP3 NDP sing 369 n n # _atom_sites.entry_id 4Q0E _atom_sites.fract_transf_matrix[1][1] 0.004681 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000373 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004602 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NDP A 1 601 207 NDP NDP . G 3 UFP A 1 602 1 UFP UFP . H 4 2XB A 1 603 1 2XB 2XB . I 4 2XB A 1 604 161 2XB 2XB . J 2 NDP B 1 601 207 NDP NDP . K 3 UFP B 1 602 1 UFP UFP . L 4 2XB B 1 603 1 2XB 2XB . M 4 2XB B 1 604 161 2XB 2XB . N 2 NDP C 1 601 207 NDP NDP . O 3 UFP C 1 602 1 UFP UFP . P 4 2XB C 1 603 1 2XB 2XB . Q 4 2XB C 1 604 161 2XB 2XB . R 2 NDP D 1 601 207 NDP NDP . S 3 UFP D 1 602 1 UFP UFP . T 4 2XB D 1 603 1 2XB 2XB . U 4 2XB D 1 604 161 2XB 2XB . V 2 NDP E 1 601 207 NDP NDP . W 3 UFP E 1 602 1 UFP UFP . X 4 2XB E 1 603 1 2XB 2XB . Y 4 2XB E 1 604 161 2XB 2XB . Z 5 HOH A 1 701 1 HOH HOH . Z 5 HOH A 2 702 7 HOH HOH . Z 5 HOH A 3 703 8 HOH HOH . Z 5 HOH A 4 704 9 HOH HOH . Z 5 HOH A 5 705 11 HOH HOH . Z 5 HOH A 6 706 12 HOH HOH . Z 5 HOH A 7 707 14 HOH HOH . Z 5 HOH A 8 708 16 HOH HOH . AA 5 HOH B 1 701 3 HOH HOH . AA 5 HOH B 2 702 18 HOH HOH . BA 5 HOH C 1 701 2 HOH HOH . BA 5 HOH C 2 702 4 HOH HOH . BA 5 HOH C 3 703 6 HOH HOH . BA 5 HOH C 4 704 10 HOH HOH . BA 5 HOH C 5 705 13 HOH HOH . BA 5 HOH C 6 706 15 HOH HOH . CA 5 HOH D 1 701 5 HOH HOH . DA 5 HOH E 1 701 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . R 2 214.167 -82.046 714.934 1 66.07 ? PA NDP 601 D 1 HETATM 2 O O1A NDP . . . R 2 213.588 -81.827 713.552 1 62.22 ? O1A NDP 601 D 1 HETATM 3 O O2A NDP . . . R 2 214.022 -83.493 715.314 1 71.04 ? O2A NDP 601 D 1 HETATM 4 O O5B NDP . . . R 2 215.651 -81.667 714.931 1 70.31 ? O5B NDP 601 D 1 HETATM 5 C C5B NDP . . . R 2 216.019 -80.315 714.936 1 68.53 ? C5B NDP 601 D 1 HETATM 6 C C4B NDP . . . R 2 217.298 -79.964 714.297 1 73.39 ? C4B NDP 601 D 1 HETATM 7 O O4B NDP . . . R 2 217.211 -80.134 712.903 1 72.93 ? O4B NDP 601 D 1 HETATM 8 C C3B NDP . . . R 2 217.624 -78.552 714.505 1 74.73 ? C3B NDP 601 D 1 HETATM 9 O O3B NDP . . . R 2 218.499 -78.409 715.568 1 76.72 ? O3B NDP 601 D 1 HETATM 10 C C2B NDP . . . R 2 218.241 -78.105 713.274 1 75.79 ? C2B NDP 601 D 1 HETATM 11 O O2B NDP . . . R 2 219.597 -77.823 713.479 1 76.99 ? O2B NDP 601 D 1 HETATM 12 C C1B NDP . . . R 2 218.105 -79.204 712.328 1 73.97 ? C1B NDP 601 D 1 HETATM 13 N N9A NDP . . . R 2 217.569 -78.725 711.101 1 77.44 ? N9A NDP 601 D 1 HETATM 14 C C8A NDP . . . R 2 216.271 -78.799 710.721 1 72.62 ? C8A NDP 601 D 1 HETATM 15 N N7A NDP . . . R 2 216.132 -78.245 709.501 1 70.92 ? N7A NDP 601 D 1 HETATM 16 C C5A NDP . . . R 2 217.367 -77.805 709.081 1 74.94 ? C5A NDP 601 D 1 HETATM 17 C C6A NDP . . . R 2 217.852 -77.157 707.916 1 74.31 ? C6A NDP 601 D 1 HETATM 18 N N6A NDP . . . R 2 216.916 -76.816 706.813 1 82.68 ? N6A NDP 601 D 1 HETATM 19 N N1A NDP . . . R 2 219.173 -76.846 707.805 1 74.22 ? N1A NDP 601 D 1 HETATM 20 C C2A NDP . . . R 2 220.023 -77.162 708.82 1 76.02 ? C2A NDP 601 D 1 HETATM 21 N N3A NDP . . . R 2 219.61 -77.773 709.935 1 75.55 ? N3A NDP 601 D 1 HETATM 22 C C4A NDP . . . R 2 218.275 -78.111 710.096 1 75.11 ? C4A NDP 601 D 1 HETATM 23 O O3 NDP . . . R 2 213.392 -81.145 715.987 1 73.48 ? O3 NDP 601 D 1 HETATM 24 P PN NDP . . . R 2 211.913 -81.526 716.416 1 74.81 ? PN NDP 601 D 1 HETATM 25 O O1N NDP . . . R 2 211.402 -80.515 717.449 1 76.18 ? O1N NDP 601 D 1 HETATM 26 O O2N NDP . . . R 2 211.016 -81.505 715.198 1 65.13 ? O2N NDP 601 D 1 HETATM 27 O O5D NDP . . . R 2 211.911 -83.008 717.065 1 71.04 ? O5D NDP 601 D 1 HETATM 28 C C5D NDP . . . R 2 211.968 -83.17 718.456 1 74.48 ? C5D NDP 601 D 1 HETATM 29 C C4D NDP . . . R 2 211.149 -84.217 719.044 1 81.48 ? C4D NDP 601 D 1 HETATM 30 O O4D NDP . . . R 2 210.762 -85.153 718.044 1 76.83 ? O4D NDP 601 D 1 HETATM 31 C C3D NDP . . . R 2 211.909 -84.979 720.045 1 72.25 ? C3D NDP 601 D 1 HETATM 32 O O3D NDP . . . R 2 211.46 -84.666 721.323 1 70.28 ? O3D NDP 601 D 1 HETATM 33 C C2D NDP . . . R 2 211.652 -86.359 719.766 1 75.78 ? C2D NDP 601 D 1 HETATM 34 O O2D NDP . . . R 2 211.184 -86.997 720.912 1 75.19 ? O2D NDP 601 D 1 HETATM 35 C C1D NDP . . . R 2 210.625 -86.367 718.7 1 73.16 ? C1D NDP 601 D 1 HETATM 36 N N1N NDP . . . R 2 210.82 -87.476 717.812 1 73.03 ? N1N NDP 601 D 1 HETATM 37 C C2N NDP . . . R 2 209.866 -88.42 717.749 1 67.01 ? C2N NDP 601 D 1 HETATM 38 C C3N NDP . . . R 2 209.996 -89.532 716.9 1 66.66 ? C3N NDP 601 D 1 HETATM 39 C C7N NDP . . . R 2 208.889 -90.576 716.862 1 67.32 ? C7N NDP 601 D 1 HETATM 40 O O7N NDP . . . R 2 208.707 -91.23 715.824 1 66.91 ? O7N NDP 601 D 1 HETATM 41 N N7N NDP . . . R 2 208.046 -90.827 717.999 1 65.17 ? N7N NDP 601 D 1 HETATM 42 C C4N NDP . . . R 2 211.149 -89.658 716.101 1 70.79 ? C4N NDP 601 D 1 HETATM 43 C C5N NDP . . . R 2 212.123 -88.654 716.193 1 72.34 ? C5N NDP 601 D 1 HETATM 44 C C6N NDP . . . R 2 211.952 -87.568 717.048 1 73.57 ? C6N NDP 601 D 1 HETATM 45 P P2B NDP . . . R 2 220.095 -76.361 713.712 1 70.92 ? P2B NDP 601 D 1 HETATM 46 O O1X NDP . . . R 2 219.331 -75.743 714.898 1 79.75 ? O1X NDP 601 D 1 HETATM 47 O O2X NDP . . . R 2 221.539 -76.386 714.02 1 71.96 ? O2X NDP 601 D 1 HETATM 48 O O3X NDP . . . R 2 219.872 -75.525 712.493 1 74.61 ? O3X NDP 601 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #