data_4Q0E # _model_server_result.job_id V6IMzHGtCXpI9_APfnBHTw _model_server_result.datetime_utc '2024-11-25 12:32:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q0e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":601}' # _entry.id 4Q0E # _exptl.entry_id 4Q0E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.56 _cell.angle_gamma 90 _cell.entry_id 4Q0E _cell.length_a 213.629 _cell.length_b 115.54 _cell.length_c 217.973 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q0E _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F,G,H,I,N,O,P,Q,Z,BA 1 1 B,D,J,K,L,M,R,S,T,U,AA,CA 2 1 E,V,W,X,Y,DA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 J N N ? 2 N N N ? 2 R N N ? 2 V N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 288 n n PA O2A NDP sing 289 n n PA O5B NDP sing 290 n n PA O3 NDP sing 291 n n O2A HOA2 NDP sing 292 n n O5B C5B NDP sing 293 n n C5B C4B NDP sing 294 n n C5B H51A NDP sing 295 n n C5B H52A NDP sing 296 n n C4B O4B NDP sing 297 n n C4B C3B NDP sing 298 n n C4B H4B NDP sing 299 n n O4B C1B NDP sing 300 n n C3B O3B NDP sing 301 n n C3B C2B NDP sing 302 n n C3B H3B NDP sing 303 n n O3B HO3A NDP sing 304 n n C2B O2B NDP sing 305 n n C2B C1B NDP sing 306 n n C2B H2B NDP sing 307 n n O2B P2B NDP sing 308 n n C1B N9A NDP sing 309 n n C1B H1B NDP sing 310 n n N9A C8A NDP sing 311 n y N9A C4A NDP sing 312 n y C8A N7A NDP doub 313 n y C8A H8A NDP sing 314 n n N7A C5A NDP sing 315 n y C5A C6A NDP sing 316 n y C5A C4A NDP doub 317 n y C6A N6A NDP sing 318 n n C6A N1A NDP doub 319 n y N6A H61A NDP sing 320 n n N6A H62A NDP sing 321 n n N1A C2A NDP sing 322 n y C2A N3A NDP doub 323 n y C2A H2A NDP sing 324 n n N3A C4A NDP sing 325 n y O3 PN NDP sing 326 n n PN O1N NDP doub 327 n n PN O2N NDP sing 328 n n PN O5D NDP sing 329 n n O2N H21N NDP sing 330 n n O5D C5D NDP sing 331 n n C5D C4D NDP sing 332 n n C5D H51N NDP sing 333 n n C5D H52N NDP sing 334 n n C4D O4D NDP sing 335 n n C4D C3D NDP sing 336 n n C4D H4D NDP sing 337 n n O4D C1D NDP sing 338 n n C3D O3D NDP sing 339 n n C3D C2D NDP sing 340 n n C3D H3D NDP sing 341 n n O3D HO3N NDP sing 342 n n C2D O2D NDP sing 343 n n C2D C1D NDP sing 344 n n C2D H2D NDP sing 345 n n O2D HO2N NDP sing 346 n n C1D N1N NDP sing 347 n n C1D H1D NDP sing 348 n n N1N C2N NDP sing 349 n n N1N C6N NDP sing 350 n n C2N C3N NDP doub 351 n n C2N H2N NDP sing 352 n n C3N C7N NDP sing 353 n n C3N C4N NDP sing 354 n n C7N O7N NDP doub 355 n n C7N N7N NDP sing 356 n n N7N H71N NDP sing 357 n n N7N H72N NDP sing 358 n n C4N C5N NDP sing 359 n n C4N H41N NDP sing 360 n n C4N H42N NDP sing 361 n n C5N C6N NDP doub 362 n n C5N H5N NDP sing 363 n n C6N H6N NDP sing 364 n n P2B O1X NDP doub 365 n n P2B O2X NDP sing 366 n n P2B O3X NDP sing 367 n n O2X HOP2 NDP sing 368 n n O3X HOP3 NDP sing 369 n n # _atom_sites.entry_id 4Q0E _atom_sites.fract_transf_matrix[1][1] 0.004681 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000373 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004602 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NDP A 1 601 207 NDP NDP . G 3 UFP A 1 602 1 UFP UFP . H 4 2XB A 1 603 1 2XB 2XB . I 4 2XB A 1 604 161 2XB 2XB . J 2 NDP B 1 601 207 NDP NDP . K 3 UFP B 1 602 1 UFP UFP . L 4 2XB B 1 603 1 2XB 2XB . M 4 2XB B 1 604 161 2XB 2XB . N 2 NDP C 1 601 207 NDP NDP . O 3 UFP C 1 602 1 UFP UFP . P 4 2XB C 1 603 1 2XB 2XB . Q 4 2XB C 1 604 161 2XB 2XB . R 2 NDP D 1 601 207 NDP NDP . S 3 UFP D 1 602 1 UFP UFP . T 4 2XB D 1 603 1 2XB 2XB . U 4 2XB D 1 604 161 2XB 2XB . V 2 NDP E 1 601 207 NDP NDP . W 3 UFP E 1 602 1 UFP UFP . X 4 2XB E 1 603 1 2XB 2XB . Y 4 2XB E 1 604 161 2XB 2XB . Z 5 HOH A 1 701 1 HOH HOH . Z 5 HOH A 2 702 7 HOH HOH . Z 5 HOH A 3 703 8 HOH HOH . Z 5 HOH A 4 704 9 HOH HOH . Z 5 HOH A 5 705 11 HOH HOH . Z 5 HOH A 6 706 12 HOH HOH . Z 5 HOH A 7 707 14 HOH HOH . Z 5 HOH A 8 708 16 HOH HOH . AA 5 HOH B 1 701 3 HOH HOH . AA 5 HOH B 2 702 18 HOH HOH . BA 5 HOH C 1 701 2 HOH HOH . BA 5 HOH C 2 702 4 HOH HOH . BA 5 HOH C 3 703 6 HOH HOH . BA 5 HOH C 4 704 10 HOH HOH . BA 5 HOH C 5 705 13 HOH HOH . BA 5 HOH C 6 706 15 HOH HOH . CA 5 HOH D 1 701 5 HOH HOH . DA 5 HOH E 1 701 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . V 2 155.194 -106.214 689.866 1 73.41 ? PA NDP 601 E 1 HETATM 2 O O1A NDP . . . V 2 154.149 -105.906 688.814 1 69.56 ? O1A NDP 601 E 1 HETATM 3 O O2A NDP . . . V 2 156.442 -106.729 689.206 1 78.38 ? O2A NDP 601 E 1 HETATM 4 O O5B NDP . . . V 2 155.524 -104.934 690.64 1 77.65 ? O5B NDP 601 E 1 HETATM 5 C C5B NDP . . . V 2 154.511 -104.002 690.894 1 75.87 ? C5B NDP 601 E 1 HETATM 6 C C4B NDP . . . V 2 154.915 -102.737 691.523 1 80.73 ? C4B NDP 601 E 1 HETATM 7 O O4B NDP . . . V 2 154.977 -101.708 690.563 1 80.27 ? O4B NDP 601 E 1 HETATM 8 C C3B NDP . . . V 2 153.935 -102.295 692.515 1 82.07 ? C3B NDP 601 E 1 HETATM 9 O O3B NDP . . . V 2 154.227 -102.827 693.76 1 84.06 ? O3B NDP 601 E 1 HETATM 10 C C2B NDP . . . V 2 154.083 -100.858 692.519 1 83.13 ? C2B NDP 601 E 1 HETATM 11 O O2B NDP . . . V 2 155.104 -100.481 693.399 1 84.33 ? O2B NDP 601 E 1 HETATM 12 C C1B NDP . . . V 2 154.47 -100.526 691.156 1 81.31 ? C1B NDP 601 E 1 HETATM 13 N N9A NDP . . . V 2 153.341 -100.079 690.415 1 84.78 ? N9A NDP 601 E 1 HETATM 14 C C8A NDP . . . V 2 152.563 -100.851 689.617 1 79.96 ? C8A NDP 601 E 1 HETATM 15 N N7A NDP . . . V 2 151.59 -100.095 689.076 1 78.26 ? N7A NDP 601 E 1 HETATM 16 C C5A NDP . . . V 2 151.738 -98.805 689.532 1 82.28 ? C5A NDP 601 E 1 HETATM 17 C C6A NDP . . . V 2 151.041 -97.585 689.324 1 81.65 ? C6A NDP 601 E 1 HETATM 18 N N6A NDP . . . V 2 149.858 -97.552 688.429 1 90.02 ? N6A NDP 601 E 1 HETATM 19 N N1A NDP . . . V 2 151.458 -96.445 689.943 1 81.56 ? N1A NDP 601 E 1 HETATM 20 C C2A NDP . . . V 2 152.547 -96.484 690.762 1 83.36 ? C2A NDP 601 E 1 HETATM 21 N N3A NDP . . . V 2 153.231 -97.61 690.985 1 82.89 ? N3A NDP 601 E 1 HETATM 22 C C4A NDP . . . V 2 152.85 -98.797 690.381 1 82.45 ? C4A NDP 601 E 1 HETATM 23 O O3 NDP . . . V 2 154.655 -107.307 690.883 1 80.82 ? O3 NDP 601 E 1 HETATM 24 P PN NDP . . . V 2 153.897 -108.602 690.364 1 82.15 ? PN NDP 601 E 1 HETATM 25 O O1N NDP . . . V 2 153.488 -109.465 691.562 1 83.52 ? O1N NDP 601 E 1 HETATM 26 O O2N NDP . . . V 2 152.66 -108.194 689.591 1 72.47 ? O2N NDP 601 E 1 HETATM 27 O O5D NDP . . . V 2 154.891 -109.451 689.41 1 78.38 ? O5D NDP 601 E 1 HETATM 28 C C5D NDP . . . V 2 155.942 -110.182 689.981 1 81.82 ? C5D NDP 601 E 1 HETATM 29 C C4D NDP . . . V 2 155.771 -111.62 690.097 1 88.82 ? C4D NDP 601 E 1 HETATM 30 O O4D NDP . . . V 2 155.763 -112.216 688.801 1 84.17 ? O4D NDP 601 E 1 HETATM 31 C C3D NDP . . . V 2 156.887 -112.231 690.826 1 79.59 ? C3D NDP 601 E 1 HETATM 32 O O3D NDP . . . V 2 156.448 -113.37 691.496 1 77.62 ? O3D NDP 601 E 1 HETATM 33 C C2D NDP . . . V 2 157.813 -112.599 689.808 1 83.12 ? C2D NDP 601 E 1 HETATM 34 O O2D NDP . . . V 2 158.509 -113.743 690.19 1 82.53 ? O2D NDP 601 E 1 HETATM 35 C C1D NDP . . . V 2 156.978 -112.866 688.612 1 80.5 ? C1D NDP 601 E 1 HETATM 36 N N1N NDP . . . V 2 157.637 -112.416 687.423 1 80.37 ? N1N NDP 601 E 1 HETATM 37 C C2N NDP . . . V 2 157.716 -113.258 686.376 1 74.35 ? C2N NDP 601 E 1 HETATM 38 C C3N NDP . . . V 2 158.348 -112.876 685.182 1 74 ? C3N NDP 601 E 1 HETATM 39 C C7N NDP . . . V 2 158.419 -113.859 684.021 1 74.66 ? C7N NDP 601 E 1 HETATM 40 O O7N NDP . . . V 2 158.907 -113.492 682.943 1 74.25 ? O7N NDP 601 E 1 HETATM 41 N N7N NDP . . . V 2 157.933 -115.207 684.139 1 72.51 ? N7N NDP 601 E 1 HETATM 42 C C4N NDP . . . V 2 158.909 -111.586 685.08 1 78.13 ? C4N NDP 601 E 1 HETATM 43 C C5N NDP . . . V 2 158.807 -110.739 686.19 1 79.68 ? C5N NDP 601 E 1 HETATM 44 C C6N NDP . . . V 2 158.17 -111.158 687.355 1 80.91 ? C6N NDP 601 E 1 HETATM 45 P P2B NDP . . . V 2 154.793 -99.76 694.75 1 78.26 ? P2B NDP 601 E 1 HETATM 46 O O1X NDP . . . V 2 155.092 -100.717 695.92 1 87.09 ? O1X NDP 601 E 1 HETATM 47 O O2X NDP . . . V 2 155.652 -98.564 694.865 1 79.3 ? O2X NDP 601 E 1 HETATM 48 O O3X NDP . . . V 2 153.36 -99.34 694.812 1 81.95 ? O3X NDP 601 E 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #