data_4Q0E # _model_server_result.job_id '_KGkiwLcS3AMOuLyQ7M_NA' _model_server_result.datetime_utc '2024-11-25 12:24:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q0e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":602}' # _entry.id 4Q0E # _exptl.entry_id 4Q0E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 326.172 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.56 _cell.angle_gamma 90 _cell.entry_id 4Q0E _cell.length_a 213.629 _cell.length_b 115.54 _cell.length_c 217.973 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q0E _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F,G,H,I,N,O,P,Q,Z,BA 1 1 B,D,J,K,L,M,R,S,T,U,AA,CA 2 1 E,V,W,X,Y,DA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 K N N ? 3 O N N ? 3 S N N ? 3 W N N # _chem_comp.formula 'C9 H12 F N2 O8 P' _chem_comp.formula_weight 326.172 _chem_comp.id UFP _chem_comp.mon_nstd_flag . _chem_comp.name "5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" _chem_comp.type 'dna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 UFP sing 491 n n N1 C6 UFP sing 492 n n N1 C1' UFP sing 493 n n C2 N3 UFP sing 494 n n C2 O2 UFP doub 495 n n N3 C4 UFP sing 496 n n N3 HN3 UFP sing 497 n n C4 C5 UFP sing 498 n n C4 O4 UFP doub 499 n n C5 C6 UFP doub 500 n n C5 F5 UFP sing 501 n n C6 H6 UFP sing 502 n n C1' C2' UFP sing 503 n n C1' O4' UFP sing 504 n n C1' H1' UFP sing 505 n n C2' C3' UFP sing 506 n n C2' "H2'1" UFP sing 507 n n C2' "H2'2" UFP sing 508 n n C3' C4' UFP sing 509 n n C3' O3' UFP sing 510 n n C3' H3' UFP sing 511 n n C4' O4' UFP sing 512 n n C4' C5' UFP sing 513 n n C4' H4' UFP sing 514 n n O3' HO3' UFP sing 515 n n C5' O5' UFP sing 516 n n C5' "H5'1" UFP sing 517 n n C5' "H5'2" UFP sing 518 n n O5' P UFP sing 519 n n P O1P UFP doub 520 n n P O2P UFP sing 521 n n P O3P UFP sing 522 n n O2P HOP2 UFP sing 523 n n O3P HOP3 UFP sing 524 n n # _atom_sites.entry_id 4Q0E _atom_sites.fract_transf_matrix[1][1] 0.004681 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000373 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004602 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NDP A 1 601 207 NDP NDP . G 3 UFP A 1 602 1 UFP UFP . H 4 2XB A 1 603 1 2XB 2XB . I 4 2XB A 1 604 161 2XB 2XB . J 2 NDP B 1 601 207 NDP NDP . K 3 UFP B 1 602 1 UFP UFP . L 4 2XB B 1 603 1 2XB 2XB . M 4 2XB B 1 604 161 2XB 2XB . N 2 NDP C 1 601 207 NDP NDP . O 3 UFP C 1 602 1 UFP UFP . P 4 2XB C 1 603 1 2XB 2XB . Q 4 2XB C 1 604 161 2XB 2XB . R 2 NDP D 1 601 207 NDP NDP . S 3 UFP D 1 602 1 UFP UFP . T 4 2XB D 1 603 1 2XB 2XB . U 4 2XB D 1 604 161 2XB 2XB . V 2 NDP E 1 601 207 NDP NDP . W 3 UFP E 1 602 1 UFP UFP . X 4 2XB E 1 603 1 2XB 2XB . Y 4 2XB E 1 604 161 2XB 2XB . Z 5 HOH A 1 701 1 HOH HOH . Z 5 HOH A 2 702 7 HOH HOH . Z 5 HOH A 3 703 8 HOH HOH . Z 5 HOH A 4 704 9 HOH HOH . Z 5 HOH A 5 705 11 HOH HOH . Z 5 HOH A 6 706 12 HOH HOH . Z 5 HOH A 7 707 14 HOH HOH . Z 5 HOH A 8 708 16 HOH HOH . AA 5 HOH B 1 701 3 HOH HOH . AA 5 HOH B 2 702 18 HOH HOH . BA 5 HOH C 1 701 2 HOH HOH . BA 5 HOH C 2 702 4 HOH HOH . BA 5 HOH C 3 703 6 HOH HOH . BA 5 HOH C 4 704 10 HOH HOH . BA 5 HOH C 5 705 13 HOH HOH . BA 5 HOH C 6 706 15 HOH HOH . CA 5 HOH D 1 701 5 HOH HOH . DA 5 HOH E 1 701 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 UFP . . . G 3 219.689 -94.307 764.139 1 51.64 ? N1 UFP 602 A 1 HETATM 2 C C2 UFP . . . G 3 219.76 -94.899 762.918 1 53.86 ? C2 UFP 602 A 1 HETATM 3 N N3 UFP . . . G 3 218.828 -94.646 761.977 1 55.72 ? N3 UFP 602 A 1 HETATM 4 C C4 UFP . . . G 3 217.803 -93.806 762.222 1 58.5 ? C4 UFP 602 A 1 HETATM 5 C C5 UFP . . . G 3 217.715 -93.183 763.488 1 59.71 ? C5 UFP 602 A 1 HETATM 6 C C6 UFP . . . G 3 218.653 -93.449 764.417 1 52.03 ? C6 UFP 602 A 1 HETATM 7 O O2 UFP . . . G 3 220.651 -95.674 762.619 1 52.89 ? O2 UFP 602 A 1 HETATM 8 O O4 UFP . . . G 3 216.97 -93.586 761.363 1 55.41 ? O4 UFP 602 A 1 HETATM 9 F F5 UFP . . . G 3 216.699 -92.332 763.765 1 76.78 ? F5 UFP 602 A 1 HETATM 10 C C1' UFP . . . G 3 220.66 -94.523 765.229 1 52.05 ? C1' UFP 602 A 1 HETATM 11 C C2' UFP . . . G 3 222.116 -94.211 764.82 1 50.87 ? C2' UFP 602 A 1 HETATM 12 C C3' UFP . . . G 3 222.779 -93.779 766.144 1 49.5 ? C3' UFP 602 A 1 HETATM 13 C C4' UFP . . . G 3 221.606 -93.561 767.123 1 48.97 ? C4' UFP 602 A 1 HETATM 14 O O3' UFP . . . G 3 223.634 -94.806 766.647 1 45.41 ? O3' UFP 602 A 1 HETATM 15 O O4' UFP . . . G 3 220.403 -93.6 766.316 1 50.65 ? O4' UFP 602 A 1 HETATM 16 C C5' UFP . . . G 3 221.761 -92.219 767.843 1 47.44 ? C5' UFP 602 A 1 HETATM 17 O O5' UFP . . . G 3 222.268 -91.224 766.95 1 51.99 ? O5' UFP 602 A 1 HETATM 18 P P UFP . . . G 3 223.628 -90.628 767.577 1 47.3 ? P UFP 602 A 1 HETATM 19 O O1P UFP . . . G 3 224.795 -91.16 766.836 1 41.32 ? O1P UFP 602 A 1 HETATM 20 O O2P UFP . . . G 3 223.746 -91.046 769.125 1 42.72 ? O2P UFP 602 A 1 HETATM 21 O O3P UFP . . . G 3 223.617 -89.023 767.456 1 47.29 ? O3P UFP 602 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #