data_4Q0E # _model_server_result.job_id P5hOUknj3WxR9yRemwepbA _model_server_result.datetime_utc '2024-11-25 12:35:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q0e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":604}' # _entry.id 4Q0E # _exptl.entry_id 4Q0E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 413.384 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-{4-[(2-amino-4-hydroxy-7H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzoyl}-L-glutamic acid' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.56 _cell.angle_gamma 90 _cell.entry_id 4Q0E _cell.length_a 213.629 _cell.length_b 115.54 _cell.length_c 217.973 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q0E _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F,G,H,I,N,O,P,Q,Z,BA 1 1 B,D,J,K,L,M,R,S,T,U,AA,CA 2 1 E,V,W,X,Y,DA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 L N N ? 4 M N N ? 4 P N N ? 4 Q N N ? 4 T N N ? 4 U N N ? 4 X N N ? 4 Y N N # _chem_comp.formula 'C19 H19 N5 O6' _chem_comp.formula_weight 413.384 _chem_comp.id 2XB _chem_comp.mon_nstd_flag . _chem_comp.name 'N-{4-[(2-amino-4-hydroxy-7H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzoyl}-L-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OT1 CT5 2XB doub 1 n n CT5 CT1 2XB sing 2 n n CT5 OXT 2XB sing 3 n n NAA CAW 2XB sing 4 n n CT1 CT2 2XB sing 5 n n CT1 NT1 2XB sing 6 n n CT2 CT3 2XB sing 7 n n CAW NAS 2XB sing 8 n y CAW NAP 2XB doub 9 n y OAD CAV 2XB doub 10 n n NAS CBA 2XB doub 11 n y OE2 CT4 2XB doub 12 n n NT1 CAV 2XB sing 13 n n CAV CAY 2XB sing 14 n n CT3 CT4 2XB sing 15 n n NAP CBB 2XB sing 16 n y CT4 OE1 2XB sing 17 n n CAJ CAY 2XB doub 18 n y CAJ CAH 2XB sing 19 n y CBA OAE 2XB sing 20 n n CBA CBC 2XB sing 21 n y CAY CAK 2XB sing 22 n y CBB CBC 2XB doub 23 n y CBB NAR 2XB sing 24 n y CAH CAX 2XB doub 25 n y CBC CAZ 2XB sing 26 n y CAK CAI 2XB doub 27 n y NAR CAL 2XB sing 28 n y CAX CAI 2XB sing 29 n y CAX CAO 2XB sing 30 n n CAZ CAL 2XB doub 31 n y CAZ CAO 2XB sing 32 n n OE1 H1 2XB sing 33 n n CT3 H2 2XB sing 34 n n CT2 H3 2XB sing 35 n n CT1 H4 2XB sing 36 n n OXT H5 2XB sing 37 n n NT1 H6 2XB sing 38 n n CAJ H7 2XB sing 39 n n CAH H8 2XB sing 40 n n CAK H9 2XB sing 41 n n CAI H10 2XB sing 42 n n CAO H11 2XB sing 43 n n CAO H12 2XB sing 44 n n NAA H14 2XB sing 45 n n NAA H15 2XB sing 46 n n NAR H16 2XB sing 47 n n CAL H17 2XB sing 48 n n CT3 H18 2XB sing 49 n n CT2 H19 2XB sing 50 n n OAE H20 2XB sing 51 n n # _atom_sites.entry_id 4Q0E _atom_sites.fract_transf_matrix[1][1] 0.004681 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000373 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004602 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NDP A 1 601 207 NDP NDP . G 3 UFP A 1 602 1 UFP UFP . H 4 2XB A 1 603 1 2XB 2XB . I 4 2XB A 1 604 161 2XB 2XB . J 2 NDP B 1 601 207 NDP NDP . K 3 UFP B 1 602 1 UFP UFP . L 4 2XB B 1 603 1 2XB 2XB . M 4 2XB B 1 604 161 2XB 2XB . N 2 NDP C 1 601 207 NDP NDP . O 3 UFP C 1 602 1 UFP UFP . P 4 2XB C 1 603 1 2XB 2XB . Q 4 2XB C 1 604 161 2XB 2XB . R 2 NDP D 1 601 207 NDP NDP . S 3 UFP D 1 602 1 UFP UFP . T 4 2XB D 1 603 1 2XB 2XB . U 4 2XB D 1 604 161 2XB 2XB . V 2 NDP E 1 601 207 NDP NDP . W 3 UFP E 1 602 1 UFP UFP . X 4 2XB E 1 603 1 2XB 2XB . Y 4 2XB E 1 604 161 2XB 2XB . Z 5 HOH A 1 701 1 HOH HOH . Z 5 HOH A 2 702 7 HOH HOH . Z 5 HOH A 3 703 8 HOH HOH . Z 5 HOH A 4 704 9 HOH HOH . Z 5 HOH A 5 705 11 HOH HOH . Z 5 HOH A 6 706 12 HOH HOH . Z 5 HOH A 7 707 14 HOH HOH . Z 5 HOH A 8 708 16 HOH HOH . AA 5 HOH B 1 701 3 HOH HOH . AA 5 HOH B 2 702 18 HOH HOH . BA 5 HOH C 1 701 2 HOH HOH . BA 5 HOH C 2 702 4 HOH HOH . BA 5 HOH C 3 703 6 HOH HOH . BA 5 HOH C 4 704 10 HOH HOH . BA 5 HOH C 5 705 13 HOH HOH . BA 5 HOH C 6 706 15 HOH HOH . CA 5 HOH D 1 701 5 HOH HOH . DA 5 HOH E 1 701 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OE1 2XB . . . U 4 216.106 -102.44 721.638 1 80.84 ? OE1 2XB 604 D 1 HETATM 2 C CT4 2XB . . . U 4 216.198 -101.271 722.097 1 78.57 ? CT4 2XB 604 D 1 HETATM 3 O OE2 2XB . . . U 4 215.351 -100.854 722.931 1 80.18 ? OE2 2XB 604 D 1 HETATM 4 C CT3 2XB . . . U 4 217.31 -100.382 721.655 1 69.78 ? CT3 2XB 604 D 1 HETATM 5 C CT2 2XB . . . U 4 217.022 -98.956 721.327 1 67.72 ? CT2 2XB 604 D 1 HETATM 6 C CT1 2XB . . . U 4 217.308 -98.446 719.955 1 67.09 ? CT1 2XB 604 D 1 HETATM 7 C CT5 2XB . . . U 4 218.238 -99.204 719.07 1 63.95 ? CT5 2XB 604 D 1 HETATM 8 O OT1 2XB . . . U 4 218.132 -99.112 717.819 1 59.42 ? OT1 2XB 604 D 1 HETATM 9 O OXT 2XB . . . U 4 219.129 -99.937 719.574 1 62.2 ? OXT 2XB 604 D 1 HETATM 10 N NT1 2XB . . . U 4 216.47 -97.434 719.392 1 62.16 ? NT1 2XB 604 D 1 HETATM 11 C CAV 2XB . . . U 4 216.398 -96.143 720.004 1 58.75 ? CAV 2XB 604 D 1 HETATM 12 O OAD 2XB . . . U 4 217.053 -95.906 721.007 1 62.2 ? OAD 2XB 604 D 1 HETATM 13 C CAY 2XB . . . U 4 215.524 -95.087 719.417 1 58.41 ? CAY 2XB 604 D 1 HETATM 14 C CAJ 2XB . . . U 4 214.644 -94.393 720.235 1 57.71 ? CAJ 2XB 604 D 1 HETATM 15 C CAH 2XB . . . U 4 213.832 -93.412 719.688 1 52.9 ? CAH 2XB 604 D 1 HETATM 16 C CAK 2XB . . . U 4 215.601 -94.811 718.057 1 57.18 ? CAK 2XB 604 D 1 HETATM 17 C CAI 2XB . . . U 4 214.785 -93.827 717.512 1 57.95 ? CAI 2XB 604 D 1 HETATM 18 C CAX 2XB . . . U 4 213.908 -93.137 718.334 1 57.9 ? CAX 2XB 604 D 1 HETATM 19 C CAO 2XB . . . U 4 213.032 -92.08 717.749 1 56.18 ? CAO 2XB 604 D 1 HETATM 20 C CAZ 2XB . . . U 4 212.309 -92.623 716.561 1 57.31 ? CAZ 2XB 604 D 1 HETATM 21 C CBC 2XB . . . U 4 211.298 -93.619 716.612 1 55.38 ? CBC 2XB 604 D 1 HETATM 22 C CBA 2XB . . . U 4 210.68 -94.369 717.663 1 55.43 ? CBA 2XB 604 D 1 HETATM 23 O OAE 2XB . . . U 4 211.065 -94.174 718.967 1 51.23 ? OAE 2XB 604 D 1 HETATM 24 N NAS 2XB . . . U 4 209.686 -95.3 717.358 1 57.05 ? NAS 2XB 604 D 1 HETATM 25 C CAW 2XB . . . U 4 209.285 -95.5 715.974 1 53.21 ? CAW 2XB 604 D 1 HETATM 26 N NAA 2XB . . . U 4 208.269 -96.448 715.636 1 58.69 ? NAA 2XB 604 D 1 HETATM 27 N NAP 2XB . . . U 4 209.92 -94.741 714.977 1 54.65 ? NAP 2XB 604 D 1 HETATM 28 C CBB 2XB . . . U 4 210.901 -93.826 715.299 1 53.36 ? CBB 2XB 604 D 1 HETATM 29 N NAR 2XB . . . U 4 211.651 -92.976 714.458 1 54.91 ? NAR 2XB 604 D 1 HETATM 30 C CAL 2XB . . . U 4 212.523 -92.232 715.251 1 61.38 ? CAL 2XB 604 D 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #