data_4Q0M # _model_server_result.job_id gTyEpdLwS1TGENmn-YgbzA _model_server_result.datetime_utc '2024-11-20 00:31:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q0m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 4Q0M # _exptl.entry_id 4Q0M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4Q0M _cell.length_a 116.38 _cell.length_b 116.38 _cell.length_c 153.941 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q0M _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_445 x-y-1/3,-y-2/3,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 -67.192024 51.313667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 40 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 39 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 43 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 42 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.298 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 149 n n C1 C2 GOL sing 150 n n C1 H11 GOL sing 151 n n C1 H12 GOL sing 152 n n O1 HO1 GOL sing 153 n n C2 O2 GOL sing 154 n n C2 C3 GOL sing 155 n n C2 H2 GOL sing 156 n n O2 HO2 GOL sing 157 n n C3 O3 GOL sing 158 n n C3 H31 GOL sing 159 n n C3 H32 GOL sing 160 n n O3 HO3 GOL sing 161 n n # _atom_sites.entry_id 4Q0M _atom_sites.fract_transf_matrix[1][1] 0.008593 _atom_sites.fract_transf_matrix[1][2] 0.004961 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009922 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006496 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 401 3324 PO4 PO4 . C 3 GOL A 1 402 3968 GOL GOL . D 3 GOL A 1 403 3968 GOL GOL . E 3 GOL A 1 404 3968 GOL GOL . F 4 4CS A 1 405 819 4CS 4CS . G 5 HOH A 1 501 1 HOH HOH . G 5 HOH A 2 502 2 HOH HOH . G 5 HOH A 3 503 3 HOH HOH . G 5 HOH A 4 504 4 HOH HOH . G 5 HOH A 5 505 5 HOH HOH . G 5 HOH A 6 506 7 HOH HOH . G 5 HOH A 7 507 8 HOH HOH . G 5 HOH A 8 508 9 HOH HOH . G 5 HOH A 9 509 10 HOH HOH . G 5 HOH A 10 510 11 HOH HOH . G 5 HOH A 11 511 12 HOH HOH . G 5 HOH A 12 512 13 HOH HOH . G 5 HOH A 13 513 14 HOH HOH . G 5 HOH A 14 514 15 HOH HOH . G 5 HOH A 15 515 16 HOH HOH . G 5 HOH A 16 516 17 HOH HOH . G 5 HOH A 17 517 18 HOH HOH . G 5 HOH A 18 518 19 HOH HOH . G 5 HOH A 19 519 20 HOH HOH . G 5 HOH A 20 520 21 HOH HOH . G 5 HOH A 21 521 22 HOH HOH . G 5 HOH A 22 522 23 HOH HOH . G 5 HOH A 23 523 24 HOH HOH . G 5 HOH A 24 524 25 HOH HOH . G 5 HOH A 25 525 26 HOH HOH . G 5 HOH A 26 526 27 HOH HOH . G 5 HOH A 27 527 29 HOH HOH . G 5 HOH A 28 528 30 HOH HOH . G 5 HOH A 29 529 31 HOH HOH . G 5 HOH A 30 530 32 HOH HOH . G 5 HOH A 31 531 33 HOH HOH . G 5 HOH A 32 532 34 HOH HOH . G 5 HOH A 33 533 35 HOH HOH . G 5 HOH A 34 534 36 HOH HOH . G 5 HOH A 35 535 38 HOH HOH . G 5 HOH A 36 536 39 HOH HOH . G 5 HOH A 37 537 40 HOH HOH . G 5 HOH A 38 538 41 HOH HOH . G 5 HOH A 39 539 42 HOH HOH . G 5 HOH A 40 540 43 HOH HOH . G 5 HOH A 41 541 44 HOH HOH . G 5 HOH A 42 542 45 HOH HOH . G 5 HOH A 43 543 46 HOH HOH . G 5 HOH A 44 544 47 HOH HOH . G 5 HOH A 45 545 48 HOH HOH . G 5 HOH A 46 546 49 HOH HOH . G 5 HOH A 47 547 50 HOH HOH . G 5 HOH A 48 548 51 HOH HOH . G 5 HOH A 49 549 52 HOH HOH . G 5 HOH A 50 550 53 HOH HOH . G 5 HOH A 51 551 54 HOH HOH . G 5 HOH A 52 552 55 HOH HOH . G 5 HOH A 53 553 56 HOH HOH . G 5 HOH A 54 554 58 HOH HOH . G 5 HOH A 55 555 59 HOH HOH . G 5 HOH A 56 556 60 HOH HOH . G 5 HOH A 57 557 61 HOH HOH . G 5 HOH A 58 558 62 HOH HOH . G 5 HOH A 59 559 63 HOH HOH . G 5 HOH A 60 560 64 HOH HOH . G 5 HOH A 61 561 65 HOH HOH . G 5 HOH A 62 562 66 HOH HOH . G 5 HOH A 63 563 67 HOH HOH . G 5 HOH A 64 564 68 HOH HOH . G 5 HOH A 65 565 69 HOH HOH . G 5 HOH A 66 566 70 HOH HOH . G 5 HOH A 67 567 71 HOH HOH . G 5 HOH A 68 568 72 HOH HOH . G 5 HOH A 69 569 73 HOH HOH . G 5 HOH A 70 570 74 HOH HOH . G 5 HOH A 71 571 75 HOH HOH . G 5 HOH A 72 572 76 HOH HOH . G 5 HOH A 73 573 77 HOH HOH . G 5 HOH A 74 574 78 HOH HOH . G 5 HOH A 75 575 79 HOH HOH . G 5 HOH A 76 576 80 HOH HOH . G 5 HOH A 77 577 81 HOH HOH . G 5 HOH A 78 578 82 HOH HOH . G 5 HOH A 79 579 83 HOH HOH . G 5 HOH A 80 580 84 HOH HOH . G 5 HOH A 81 581 85 HOH HOH . G 5 HOH A 82 582 86 HOH HOH . G 5 HOH A 83 583 87 HOH HOH . G 5 HOH A 84 584 88 HOH HOH . G 5 HOH A 85 585 89 HOH HOH . G 5 HOH A 86 586 90 HOH HOH . G 5 HOH A 87 587 91 HOH HOH . G 5 HOH A 88 588 92 HOH HOH . G 5 HOH A 89 589 93 HOH HOH . G 5 HOH A 90 590 94 HOH HOH . G 5 HOH A 91 591 95 HOH HOH . G 5 HOH A 92 592 96 HOH HOH . G 5 HOH A 93 593 97 HOH HOH . G 5 HOH A 94 594 98 HOH HOH . G 5 HOH A 95 595 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -13.246 -28.014 -3.528 1 46.07 ? C1 GOL 404 A 1 HETATM 2 O O1 GOL . . . E 3 -12.77 -27.119 -4.511 1 45.41 ? O1 GOL 404 A 1 HETATM 3 C C2 GOL . . . E 3 -12.191 -29.079 -3.239 1 45.01 ? C2 GOL 404 A 1 HETATM 4 O O2 GOL . . . E 3 -12.431 -30.209 -4.052 1 50.8 ? O2 GOL 404 A 1 HETATM 5 C C3 GOL . . . E 3 -12.269 -29.49 -1.774 1 45.51 ? C3 GOL 404 A 1 HETATM 6 O O3 GOL . . . E 3 -11.071 -29.155 -1.099 1 47.05 ? O3 GOL 404 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #