data_4Q0Q
#
_model_server_result.job_id            bi87gNE0yuLUGca3CZB0OQ 
_model_server_result.datetime_utc      '2024-11-05 06:49:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4q0q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":508}' 
#
_entry.id    4Q0Q 
#
_exptl.entry_id    4Q0Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.13 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            alpha-L-ribulofuranose 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4Q0Q 
_cell.length_a            95.42 
_cell.length_b            107.42 
_cell.length_c            118.12 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Q0Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        22 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'F 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 x,-y+1/2,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 53.71 59.06 
3 'crystal symmetry operation' 11_555 -x+1/2,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 47.71 0 59.06 
4 'crystal symmetry operation' 14_555 -x+1/2,-y+1/2,z -1 0 0 0 -1 0 0 0 1 47.71 53.71 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 117 A HIS 106 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc2 A NE2 HIS 119 A HIS 108 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc3 A OE2 GLU 124 A GLU 113 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc4 A NE2 HIS 199 A HIS 188 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc5 B CO CO . A CO 501 1_555 C O2 RUU . A RUU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc6 B CO CO . A CO 501 1_555 C O1 RUU . A RUU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
#
_chem_comp.formula           'C5 H10 O5' 
_chem_comp.formula_weight    150.13 
_chem_comp.id                RUU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              alpha-L-ribulofuranose 
_chem_comp.type              'l-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     alpha-L-ribulose;L-ribulose;ribulose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 C4 RUU sing 320 n n 
C5 O5 RUU sing 321 n n 
C4 O4 RUU sing 322 n n 
C4 C3 RUU sing 323 n n 
O5 C2 RUU sing 324 n n 
C3 C2 RUU sing 325 n n 
C3 O3 RUU sing 326 n n 
C2 O2 RUU sing 327 n n 
C2 C1 RUU sing 328 n n 
C1 O1 RUU sing 329 n n 
C1 H11 RUU sing 330 n n 
C1 H12 RUU sing 331 n n 
O1 HO1 RUU sing 332 n n 
O2 HO2 RUU sing 333 n n 
C3 H3 RUU sing 334 n n 
O3 HO3 RUU sing 335 n n 
C4 H4 RUU sing 336 n n 
O4 HO4 RUU sing 337 n n 
C5 H51 RUU sing 338 n n 
C5 H52 RUU sing 339 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
RUU LRulfa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
RUU a-L-ribulofuranose 'COMMON NAME' GMML 1 
RUU a-L-Rulf 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
#
_atom_sites.entry_id                     4Q0Q 
_atom_sites.fract_transf_matrix[1][1]    0.01048 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009309 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008466 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CO A 1 501 501 CO CO . 
C 3 RUU A 1 502 502 RUU RUU . 
D 3 RUU A 1 503 503 RUU RUU . 
E 4 QDK A 1 504 504 QDK QDK . 
F 3 RUU A 1 505 505 RUU RUU . 
G 3 RUU A 1 506 506 RUU RUU . 
H 3 RUU A 1 507 507 RUU RUU . 
I 3 RUU A 1 508 508 RUU RUU . 
J 3 RUU A 1 509 509 RUU RUU . 
K 5 NCO A 1 510 510 NCO NCO . 
L 6 HOH A 1 601 601 HOH HOH . 
L 6 HOH A 2 602 602 HOH HOH . 
L 6 HOH A 3 603 603 HOH HOH . 
L 6 HOH A 4 604 604 HOH HOH . 
L 6 HOH A 5 605 605 HOH HOH . 
L 6 HOH A 6 606 606 HOH HOH . 
L 6 HOH A 7 607 607 HOH HOH . 
L 6 HOH A 8 608 608 HOH HOH . 
L 6 HOH A 9 609 609 HOH HOH . 
L 6 HOH A 10 610 610 HOH HOH . 
L 6 HOH A 11 611 611 HOH HOH . 
L 6 HOH A 12 612 612 HOH HOH . 
L 6 HOH A 13 613 613 HOH HOH . 
L 6 HOH A 14 614 614 HOH HOH . 
L 6 HOH A 15 615 615 HOH HOH . 
L 6 HOH A 16 616 616 HOH HOH . 
L 6 HOH A 17 617 617 HOH HOH . 
L 6 HOH A 18 618 618 HOH HOH . 
L 6 HOH A 19 619 619 HOH HOH . 
L 6 HOH A 20 620 620 HOH HOH . 
L 6 HOH A 21 621 621 HOH HOH . 
L 6 HOH A 22 622 622 HOH HOH . 
L 6 HOH A 23 623 623 HOH HOH . 
L 6 HOH A 24 624 624 HOH HOH . 
L 6 HOH A 25 625 625 HOH HOH . 
L 6 HOH A 26 626 626 HOH HOH . 
L 6 HOH A 27 627 627 HOH HOH . 
L 6 HOH A 28 628 628 HOH HOH . 
L 6 HOH A 29 629 629 HOH HOH . 
L 6 HOH A 30 630 630 HOH HOH . 
L 6 HOH A 31 631 631 HOH HOH . 
L 6 HOH A 32 632 632 HOH HOH . 
L 6 HOH A 33 633 633 HOH HOH . 
L 6 HOH A 34 634 634 HOH HOH . 
L 6 HOH A 35 635 635 HOH HOH . 
L 6 HOH A 36 636 636 HOH HOH . 
L 6 HOH A 37 637 637 HOH HOH . 
L 6 HOH A 38 638 638 HOH HOH . 
L 6 HOH A 39 639 639 HOH HOH . 
L 6 HOH A 40 640 640 HOH HOH . 
L 6 HOH A 41 641 641 HOH HOH . 
L 6 HOH A 42 642 642 HOH HOH . 
L 6 HOH A 43 643 643 HOH HOH . 
L 6 HOH A 44 644 644 HOH HOH . 
L 6 HOH A 45 645 645 HOH HOH . 
L 6 HOH A 46 646 646 HOH HOH . 
L 6 HOH A 47 647 647 HOH HOH . 
L 6 HOH A 48 648 648 HOH HOH . 
L 6 HOH A 49 649 649 HOH HOH . 
L 6 HOH A 50 650 650 HOH HOH . 
L 6 HOH A 51 651 651 HOH HOH . 
L 6 HOH A 52 652 652 HOH HOH . 
L 6 HOH A 53 653 653 HOH HOH . 
L 6 HOH A 54 654 654 HOH HOH . 
L 6 HOH A 55 655 655 HOH HOH . 
L 6 HOH A 56 656 656 HOH HOH . 
L 6 HOH A 57 657 657 HOH HOH . 
L 6 HOH A 58 658 658 HOH HOH . 
L 6 HOH A 59 659 659 HOH HOH . 
L 6 HOH A 60 660 660 HOH HOH . 
L 6 HOH A 61 661 661 HOH HOH . 
L 6 HOH A 62 662 662 HOH HOH . 
L 6 HOH A 63 663 663 HOH HOH . 
L 6 HOH A 64 664 664 HOH HOH . 
L 6 HOH A 65 665 665 HOH HOH . 
L 6 HOH A 66 666 666 HOH HOH . 
L 6 HOH A 67 667 667 HOH HOH . 
L 6 HOH A 68 668 668 HOH HOH . 
L 6 HOH A 69 669 669 HOH HOH . 
L 6 HOH A 70 670 670 HOH HOH . 
L 6 HOH A 71 671 671 HOH HOH . 
L 6 HOH A 72 672 672 HOH HOH . 
L 6 HOH A 73 673 673 HOH HOH . 
L 6 HOH A 74 674 674 HOH HOH . 
L 6 HOH A 75 675 675 HOH HOH . 
L 6 HOH A 76 676 676 HOH HOH . 
L 6 HOH A 77 677 677 HOH HOH . 
L 6 HOH A 78 678 678 HOH HOH . 
L 6 HOH A 79 679 679 HOH HOH . 
L 6 HOH A 80 680 680 HOH HOH . 
L 6 HOH A 81 681 681 HOH HOH . 
L 6 HOH A 82 682 682 HOH HOH . 
L 6 HOH A 83 683 683 HOH HOH . 
L 6 HOH A 84 684 684 HOH HOH . 
L 6 HOH A 85 685 685 HOH HOH . 
L 6 HOH A 86 686 686 HOH HOH . 
L 6 HOH A 87 687 687 HOH HOH . 
L 6 HOH A 88 688 688 HOH HOH . 
L 6 HOH A 89 689 689 HOH HOH . 
L 6 HOH A 90 690 690 HOH HOH . 
L 6 HOH A 91 691 691 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RUU . . . I 3 3.476 -7.553 15.734 1 61.92 ? C1 RUU 508 A 1 
HETATM 2 O O1 RUU . . . I 3 2.343 -7.573 16.591 1 56.52 ? O1 RUU 508 A 1 
HETATM 3 C C2 RUU . . . I 3 3.781 -6.147 15.24 1 62.65 ? C2 RUU 508 A 1 
HETATM 4 O O2 RUU . . . I 3 3.125 -5.911 14.004 1 61.84 ? O2 RUU 508 A 1 
HETATM 5 C C3 RUU . . . I 3 5.276 -5.873 15.096 1 63.78 ? C3 RUU 508 A 1 
HETATM 6 O O3 RUU . . . I 3 5.551 -5.401 13.784 1 64.41 ? O3 RUU 508 A 1 
HETATM 7 C C4 RUU . . . I 3 5.598 -4.772 16.107 1 64.12 ? C4 RUU 508 A 1 
HETATM 8 O O4 RUU . . . I 3 5.976 -3.594 15.414 1 65.62 ? O4 RUU 508 A 1 
HETATM 9 C C5 RUU . . . I 3 4.31 -4.516 16.88 1 64.1 ? C5 RUU 508 A 1 
HETATM 10 O O5 RUU . . . I 3 3.259 -5.223 16.208 1 63.36 ? O5 RUU 508 A 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           345 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           10 
#