data_4Q0U # _model_server_result.job_id TRnIQug0dJwWTXjq-e2ImA _model_server_result.datetime_utc '2024-11-24 20:33:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q0u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 4Q0U # _exptl.entry_id 4Q0U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.13 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-L-ribofuranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Q0U _cell.length_a 96.73 _cell.length_b 107.06 _cell.length_c 118.89 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q0U _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x,-y+1/2,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 53.53 59.445 3 'crystal symmetry operation' 11_555 -x+1/2,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 48.365 0 59.445 4 'crystal symmetry operation' 14_555 -x+1/2,-y+1/2,z -1 0 0 0 -1 0 0 0 1 48.365 53.53 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 117 A HIS 106 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc2 A NE2 HIS 119 A HIS 108 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc3 A OE2 GLU 124 A GLU 113 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc4 A NE2 HIS 199 A HIS 188 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc5 B CO CO . A CO 501 1_555 C O2 ROR . A ROR 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc6 B CO CO . A CO 501 1_555 C O1 ROR . A ROR 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? # _chem_comp.formula 'C5 H10 O5' _chem_comp.formula_weight 150.13 _chem_comp.id Z6J _chem_comp.mon_nstd_flag . _chem_comp.name alpha-L-ribofuranose _chem_comp.type 'l-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-L-ribose;L-ribose;ribose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C5 Z6J sing 439 n n C5 C4 Z6J sing 440 n n C4 O4 Z6J sing 441 n n C4 C3 Z6J sing 442 n n O4 C1 Z6J sing 443 n n C3 O3 Z6J sing 444 n n C3 C2 Z6J sing 445 n n C2 O2 Z6J sing 446 n n C2 C1 Z6J sing 447 n n C1 O1 Z6J sing 448 n n C5 H51 Z6J sing 449 n n C5 H52 Z6J sing 450 n n C4 H4 Z6J sing 451 n n C3 H3 Z6J sing 452 n n C1 H1 Z6J sing 453 n n O3 HO3 Z6J sing 454 n n C2 H2 Z6J sing 455 n n O2 HO2 Z6J sing 456 n n O1 HO1 Z6J sing 457 n n O5 HO5 Z6J sing 458 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version Z6J LRibfa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 Z6J a-L-ribofuranose 'COMMON NAME' GMML 1 Z6J a-L-Ribf 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 Z6J Rib 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4Q0U _atom_sites.fract_transf_matrix[1][1] 0.010338 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009341 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008411 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO A 1 501 501 CO CO . C 3 ROR A 1 502 502 ROR RB0 . D 4 Z6J A 1 503 503 Z6J Z6J . E 4 Z6J A 1 504 504 Z6J Z6J . F 5 0MK A 1 505 505 0MK 0MK . G 4 Z6J A 1 506 506 Z6J Z6J . H 6 NCO A 1 507 507 NCO NCO . I 7 HOH A 1 601 601 HOH HOH . I 7 HOH A 2 602 602 HOH HOH . I 7 HOH A 3 603 603 HOH HOH . I 7 HOH A 4 604 604 HOH HOH . I 7 HOH A 5 605 605 HOH HOH . I 7 HOH A 6 606 606 HOH HOH . I 7 HOH A 7 607 607 HOH HOH . I 7 HOH A 8 608 608 HOH HOH . I 7 HOH A 9 609 609 HOH HOH . I 7 HOH A 10 610 610 HOH HOH . I 7 HOH A 11 611 611 HOH HOH . I 7 HOH A 12 612 612 HOH HOH . I 7 HOH A 13 613 613 HOH HOH . I 7 HOH A 14 614 614 HOH HOH . I 7 HOH A 15 615 615 HOH HOH . I 7 HOH A 16 616 616 HOH HOH . I 7 HOH A 17 617 617 HOH HOH . I 7 HOH A 18 618 618 HOH HOH . I 7 HOH A 19 619 619 HOH HOH . I 7 HOH A 20 620 620 HOH HOH . I 7 HOH A 21 621 621 HOH HOH . I 7 HOH A 22 622 622 HOH HOH . I 7 HOH A 23 623 623 HOH HOH . I 7 HOH A 24 624 624 HOH HOH . I 7 HOH A 25 625 625 HOH HOH . I 7 HOH A 26 626 626 HOH HOH . I 7 HOH A 27 627 627 HOH HOH . I 7 HOH A 28 628 628 HOH HOH . I 7 HOH A 29 629 629 HOH HOH . I 7 HOH A 30 630 630 HOH HOH . I 7 HOH A 31 631 631 HOH HOH . I 7 HOH A 32 632 632 HOH HOH . I 7 HOH A 33 633 633 HOH HOH . I 7 HOH A 34 634 634 HOH HOH . I 7 HOH A 35 635 635 HOH HOH . I 7 HOH A 36 636 636 HOH HOH . I 7 HOH A 37 637 637 HOH HOH . I 7 HOH A 38 638 638 HOH HOH . I 7 HOH A 39 639 639 HOH HOH . I 7 HOH A 40 640 640 HOH HOH . I 7 HOH A 41 641 641 HOH HOH . I 7 HOH A 42 642 642 HOH HOH . I 7 HOH A 43 643 643 HOH HOH . I 7 HOH A 44 644 644 HOH HOH . I 7 HOH A 45 645 645 HOH HOH . I 7 HOH A 46 646 646 HOH HOH . I 7 HOH A 47 647 647 HOH HOH . I 7 HOH A 48 648 648 HOH HOH . I 7 HOH A 49 649 649 HOH HOH . I 7 HOH A 50 650 650 HOH HOH . I 7 HOH A 51 651 651 HOH HOH . I 7 HOH A 52 652 652 HOH HOH . I 7 HOH A 53 653 653 HOH HOH . I 7 HOH A 54 654 654 HOH HOH . I 7 HOH A 55 655 655 HOH HOH . I 7 HOH A 56 656 656 HOH HOH . I 7 HOH A 57 657 657 HOH HOH . I 7 HOH A 58 658 658 HOH HOH . I 7 HOH A 59 659 659 HOH HOH . I 7 HOH A 60 660 660 HOH HOH . I 7 HOH A 61 661 661 HOH HOH . I 7 HOH A 62 662 662 HOH HOH . I 7 HOH A 63 663 663 HOH HOH . I 7 HOH A 64 664 664 HOH HOH . I 7 HOH A 65 665 665 HOH HOH . I 7 HOH A 66 666 666 HOH HOH . I 7 HOH A 67 667 667 HOH HOH . I 7 HOH A 68 668 668 HOH HOH . I 7 HOH A 69 669 669 HOH HOH . I 7 HOH A 70 670 670 HOH HOH . I 7 HOH A 71 671 671 HOH HOH . I 7 HOH A 72 672 672 HOH HOH . I 7 HOH A 73 673 673 HOH HOH . I 7 HOH A 74 674 674 HOH HOH . I 7 HOH A 75 675 675 HOH HOH . I 7 HOH A 76 676 676 HOH HOH . I 7 HOH A 77 677 677 HOH HOH . I 7 HOH A 78 678 678 HOH HOH . I 7 HOH A 79 679 679 HOH HOH . I 7 HOH A 80 680 680 HOH HOH . I 7 HOH A 81 681 681 HOH HOH . I 7 HOH A 82 682 682 HOH HOH . I 7 HOH A 83 683 683 HOH HOH . I 7 HOH A 84 684 684 HOH HOH . I 7 HOH A 85 685 685 HOH HOH . I 7 HOH A 86 686 686 HOH HOH . I 7 HOH A 87 687 687 HOH HOH . I 7 HOH A 88 688 688 HOH HOH . I 7 HOH A 89 689 689 HOH HOH . I 7 HOH A 90 690 690 HOH HOH . I 7 HOH A 91 691 691 HOH HOH . I 7 HOH A 92 692 692 HOH HOH . I 7 HOH A 93 693 693 HOH HOH . I 7 HOH A 94 694 694 HOH HOH . I 7 HOH A 95 695 695 HOH HOH . I 7 HOH A 96 696 696 HOH HOH . I 7 HOH A 97 697 697 HOH HOH . I 7 HOH A 98 698 698 HOH HOH . I 7 HOH A 99 699 699 HOH HOH . I 7 HOH A 100 700 700 HOH HOH . I 7 HOH A 101 701 701 HOH HOH . I 7 HOH A 102 702 702 HOH HOH . I 7 HOH A 103 703 703 HOH HOH . I 7 HOH A 104 704 704 HOH HOH . I 7 HOH A 105 705 705 HOH HOH . I 7 HOH A 106 706 706 HOH HOH . I 7 HOH A 107 707 707 HOH HOH . I 7 HOH A 108 708 708 HOH HOH . I 7 HOH A 109 709 709 HOH HOH . I 7 HOH A 110 710 710 HOH HOH . I 7 HOH A 111 711 711 HOH HOH . I 7 HOH A 112 712 712 HOH HOH . I 7 HOH A 113 713 713 HOH HOH . I 7 HOH A 114 714 714 HOH HOH . I 7 HOH A 115 715 715 HOH HOH . I 7 HOH A 116 716 716 HOH HOH . I 7 HOH A 117 717 717 HOH HOH . I 7 HOH A 118 718 718 HOH HOH . I 7 HOH A 119 719 719 HOH HOH . I 7 HOH A 120 720 720 HOH HOH . I 7 HOH A 121 721 721 HOH HOH . I 7 HOH A 122 722 722 HOH HOH . I 7 HOH A 123 723 723 HOH HOH . I 7 HOH A 124 724 724 HOH HOH . I 7 HOH A 125 725 725 HOH HOH . I 7 HOH A 126 726 726 HOH HOH . I 7 HOH A 127 727 727 HOH HOH . I 7 HOH A 128 728 728 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 Z6J . . . E 4 33.54 24.666 6.069 1 69.56 ? O5 Z6J 504 A 1 HETATM 2 C C5 Z6J . . . E 4 32.608 24.666 4.995 1 69.22 ? C5 Z6J 504 A 1 HETATM 3 C C4 Z6J . . . E 4 33.305 24.468 3.662 1 69.5 ? C4 Z6J 504 A 1 HETATM 4 O O4 Z6J . . . E 4 34.66 24.092 3.949 1 70.39 ? O4 Z6J 504 A 1 HETATM 5 C C3 Z6J . . . E 4 33.362 25.763 2.854 1 69.41 ? C3 Z6J 504 A 1 HETATM 6 O O3 Z6J . . . E 4 33.059 25.494 1.492 1 68.32 ? O3 Z6J 504 A 1 HETATM 7 C C2 Z6J . . . E 4 34.804 26.269 2.978 1 69.35 ? C2 Z6J 504 A 1 HETATM 8 O O2 Z6J . . . E 4 35.387 26.39 1.689 1 68.63 ? O2 Z6J 504 A 1 HETATM 9 C C1 Z6J . . . E 4 35.551 25.207 3.785 1 69.79 ? C1 Z6J 504 A 1 HETATM 10 O O1 Z6J . . . E 4 36.688 24.764 3.06 1 70.29 ? O1 Z6J 504 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #