data_4Q19 # _model_server_result.job_id ou81ncNW3JnXgU47FXu-8w _model_server_result.datetime_utc '2024-11-17 10:24:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q19 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4Q19 # _exptl.entry_id 4Q19 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 403.522 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(4-(((4,6-diaminopyrimidin-2-yl)thio)methyl)-5-propylthiazol-2-yl)-2-methoxyphenol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Q19 _cell.length_a 68.535 _cell.length_b 68.535 _cell.length_c 119.793 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q19 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C18 H21 N5 O2 S2' _chem_comp.formula_weight 403.522 _chem_comp.id 2XL _chem_comp.mon_nstd_flag . _chem_comp.name 5-(4-(((4,6-diaminopyrimidin-2-yl)thio)methyl)-5-propylthiazol-2-yl)-2-methoxyphenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 5-(4-{[(4,6-diaminopyrimidin-2-yl)sulfanyl]methyl}-5-propyl-1,3-thiazol-2-yl)-2-methoxyphenol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAK CAJ 2XL sing 1 n n CAK CAZ 2XL sing 2 n n CAJ CAA 2XL sing 3 n n SAR CAZ 2XL sing 4 n y SAR CBA 2XL sing 5 n y CAZ CAY 2XL doub 6 n y CAF CAG 2XL doub 7 n y CAF CAV 2XL sing 8 n y NAD C4 2XL sing 9 n n CAB OAP 2XL sing 10 n n CAG CAX 2XL sing 11 n y C4 C5 2XL doub 12 n y C4 N3 2XL sing 13 n y C5 C6 2XL sing 14 n y CBA CAV 2XL sing 15 n n CBA NAO 2XL doub 16 n y CAV CAI 2XL doub 17 n y N3 C2 2XL doub 18 n y C6 NAC 2XL sing 19 n n C6 N1 2XL doub 20 n y CAX OAP 2XL sing 21 n n CAX CAU 2XL doub 22 n y C2 N1 2XL sing 23 n y C2 SAQ 2XL sing 24 n n CAY NAO 2XL sing 25 n y CAY CAL 2XL sing 26 n n SAQ CAL 2XL sing 27 n n CAI CAU 2XL sing 28 n y CAU OAE 2XL sing 29 n n CAB H1 2XL sing 30 n n CAB H2 2XL sing 31 n n CAB H3 2XL sing 32 n n CAI H4 2XL sing 33 n n OAE H5 2XL sing 34 n n CAG H6 2XL sing 35 n n CAF H7 2XL sing 36 n n CAK H8 2XL sing 37 n n CAK H9 2XL sing 38 n n CAJ H10 2XL sing 39 n n CAJ H11 2XL sing 40 n n CAA H12 2XL sing 41 n n CAA H13 2XL sing 42 n n CAA H14 2XL sing 43 n n CAL H15 2XL sing 44 n n CAL H16 2XL sing 45 n n NAC H17 2XL sing 46 n n NAC H18 2XL sing 47 n n C5 H19 2XL sing 48 n n NAD H20 2XL sing 49 n n NAD H21 2XL sing 50 n n # _atom_sites.entry_id 4Q19 _atom_sites.fract_transf_matrix[1][1] 0.014591 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014591 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008348 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2XL A 1 301 301 2XL DRG . D 3 UDP A 1 302 401 UDP UDP . E 2 2XL B 1 301 301 2XL DRG . F 3 UDP B 1 302 401 UDP UDP . G 4 HOH A 1 401 2 HOH HOH . G 4 HOH A 2 402 3 HOH HOH . G 4 HOH A 3 403 5 HOH HOH . G 4 HOH A 4 404 6 HOH HOH . G 4 HOH A 5 405 7 HOH HOH . G 4 HOH A 6 406 9 HOH HOH . G 4 HOH A 7 407 13 HOH HOH . G 4 HOH A 8 408 14 HOH HOH . G 4 HOH A 9 409 21 HOH HOH . G 4 HOH A 10 410 22 HOH HOH . G 4 HOH A 11 411 26 HOH HOH . G 4 HOH A 12 412 27 HOH HOH . G 4 HOH A 13 413 28 HOH HOH . G 4 HOH A 14 414 29 HOH HOH . G 4 HOH A 15 415 33 HOH HOH . G 4 HOH A 16 416 34 HOH HOH . G 4 HOH A 17 417 35 HOH HOH . G 4 HOH A 18 418 36 HOH HOH . G 4 HOH A 19 419 39 HOH HOH . G 4 HOH A 20 420 42 HOH HOH . G 4 HOH A 21 421 43 HOH HOH . G 4 HOH A 22 422 46 HOH HOH . G 4 HOH A 23 423 48 HOH HOH . G 4 HOH A 24 424 50 HOH HOH . G 4 HOH A 25 425 52 HOH HOH . G 4 HOH A 26 426 54 HOH HOH . G 4 HOH A 27 427 57 HOH HOH . G 4 HOH A 28 428 58 HOH HOH . G 4 HOH A 29 429 59 HOH HOH . G 4 HOH A 30 430 60 HOH HOH . G 4 HOH A 31 431 61 HOH HOH . G 4 HOH A 32 432 62 HOH HOH . G 4 HOH A 33 433 63 HOH HOH . G 4 HOH A 34 434 64 HOH HOH . G 4 HOH A 35 435 65 HOH HOH . G 4 HOH A 36 436 82 HOH HOH . G 4 HOH A 37 437 83 HOH HOH . G 4 HOH A 38 438 84 HOH HOH . G 4 HOH A 39 439 85 HOH HOH . G 4 HOH A 40 440 86 HOH HOH . G 4 HOH A 41 441 87 HOH HOH . G 4 HOH A 42 442 88 HOH HOH . G 4 HOH A 43 443 89 HOH HOH . G 4 HOH A 44 444 90 HOH HOH . G 4 HOH A 45 445 91 HOH HOH . G 4 HOH A 46 446 98 HOH HOH . G 4 HOH A 47 447 99 HOH HOH . G 4 HOH A 48 448 100 HOH HOH . G 4 HOH A 49 449 101 HOH HOH . H 4 HOH B 1 401 1 HOH HOH . H 4 HOH B 2 402 4 HOH HOH . H 4 HOH B 3 403 8 HOH HOH . H 4 HOH B 4 404 10 HOH HOH . H 4 HOH B 5 405 11 HOH HOH . H 4 HOH B 6 406 12 HOH HOH . H 4 HOH B 7 407 15 HOH HOH . H 4 HOH B 8 408 16 HOH HOH . H 4 HOH B 9 409 17 HOH HOH . H 4 HOH B 10 410 18 HOH HOH . H 4 HOH B 11 411 19 HOH HOH . H 4 HOH B 12 412 20 HOH HOH . H 4 HOH B 13 413 23 HOH HOH . H 4 HOH B 14 414 24 HOH HOH . H 4 HOH B 15 415 25 HOH HOH . H 4 HOH B 16 416 30 HOH HOH . H 4 HOH B 17 417 31 HOH HOH . H 4 HOH B 18 418 32 HOH HOH . H 4 HOH B 19 419 37 HOH HOH . H 4 HOH B 20 420 38 HOH HOH . H 4 HOH B 21 421 40 HOH HOH . H 4 HOH B 22 422 41 HOH HOH . H 4 HOH B 23 423 44 HOH HOH . H 4 HOH B 24 424 45 HOH HOH . H 4 HOH B 25 425 47 HOH HOH . H 4 HOH B 26 426 49 HOH HOH . H 4 HOH B 27 427 51 HOH HOH . H 4 HOH B 28 428 53 HOH HOH . H 4 HOH B 29 429 55 HOH HOH . H 4 HOH B 30 430 56 HOH HOH . H 4 HOH B 31 431 66 HOH HOH . H 4 HOH B 32 432 67 HOH HOH . H 4 HOH B 33 433 68 HOH HOH . H 4 HOH B 34 434 69 HOH HOH . H 4 HOH B 35 435 70 HOH HOH . H 4 HOH B 36 436 71 HOH HOH . H 4 HOH B 37 437 72 HOH HOH . H 4 HOH B 38 438 73 HOH HOH . H 4 HOH B 39 439 74 HOH HOH . H 4 HOH B 40 440 75 HOH HOH . H 4 HOH B 41 441 76 HOH HOH . H 4 HOH B 42 442 77 HOH HOH . H 4 HOH B 43 443 78 HOH HOH . H 4 HOH B 44 444 79 HOH HOH . H 4 HOH B 45 445 80 HOH HOH . H 4 HOH B 46 446 81 HOH HOH . H 4 HOH B 47 447 92 HOH HOH . H 4 HOH B 48 448 93 HOH HOH . H 4 HOH B 49 449 94 HOH HOH . H 4 HOH B 50 450 95 HOH HOH . H 4 HOH B 51 451 96 HOH HOH . H 4 HOH B 52 452 97 HOH HOH . H 4 HOH B 53 453 102 HOH HOH . H 4 HOH B 54 454 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAB 2XL . . . C 2 -38.903 10.787 -4.413 1 30.18 ? CAB 2XL 301 A 1 HETATM 2 O OAP 2XL . . . C 2 -37.986 10.679 -3.302 1 30.41 ? OAP 2XL 301 A 1 HETATM 3 C CAX 2XL . . . C 2 -36.712 11.143 -3.54 1 30.04 ? CAX 2XL 301 A 1 HETATM 4 C CAU 2XL . . . C 2 -35.667 10.493 -2.865 1 30.19 ? CAU 2XL 301 A 1 HETATM 5 C CAI 2XL . . . C 2 -34.354 10.9 -3.034 1 30.1 ? CAI 2XL 301 A 1 HETATM 6 O OAE 2XL . . . C 2 -35.943 9.477 -2.004 1 29.78 ? OAE 2XL 301 A 1 HETATM 7 C CAG 2XL . . . C 2 -36.426 12.216 -4.394 1 29.58 ? CAG 2XL 301 A 1 HETATM 8 C CAF 2XL . . . C 2 -35.093 12.614 -4.563 1 30.05 ? CAF 2XL 301 A 1 HETATM 9 C CAV 2XL . . . C 2 -34.051 11.934 -3.891 1 30.07 ? CAV 2XL 301 A 1 HETATM 10 C CBA 2XL . . . C 2 -32.766 12.281 -3.991 1 29.82 ? CBA 2XL 301 A 1 HETATM 11 N NAO 2XL . . . C 2 -31.822 11.976 -3.102 1 30.46 ? NAO 2XL 301 A 1 HETATM 12 S SAR 2XL . . . C 2 -32.108 13.101 -5.114 1 30.2 ? SAR 2XL 301 A 1 HETATM 13 C CAZ 2XL . . . C 2 -30.678 13.153 -4.602 1 30.43 ? CAZ 2XL 301 A 1 HETATM 14 C CAK 2XL . . . C 2 -29.525 13.864 -5.335 1 30.1 ? CAK 2XL 301 A 1 HETATM 15 C CAJ 2XL . . . C 2 -29.675 15.351 -5.13 1 29.84 ? CAJ 2XL 301 A 1 HETATM 16 C CAA 2XL . . . C 2 -28.852 15.767 -3.887 1 30.35 ? CAA 2XL 301 A 1 HETATM 17 C CAY 2XL . . . C 2 -30.64 12.505 -3.444 1 30.08 ? CAY 2XL 301 A 1 HETATM 18 C CAL 2XL . . . C 2 -29.393 12.298 -2.631 1 30.15 ? CAL 2XL 301 A 1 HETATM 19 S SAQ 2XL . . . C 2 -28.68 10.679 -3.105 1 30 ? SAQ 2XL 301 A 1 HETATM 20 C C2 2XL . . . C 2 -27.016 11.049 -3.503 1 29.97 ? C2 2XL 301 A 1 HETATM 21 N N3 2XL . . . C 2 -26.197 10.025 -3.884 1 29.72 ? N3 2XL 301 A 1 HETATM 22 N N1 2XL . . . C 2 -26.57 12.297 -3.397 1 29.28 ? N1 2XL 301 A 1 HETATM 23 C C6 2XL . . . C 2 -25.268 12.543 -3.705 1 30.02 ? C6 2XL 301 A 1 HETATM 24 N NAC 2XL . . . C 2 -24.796 13.784 -3.624 1 29.51 ? NAC 2XL 301 A 1 HETATM 25 C C5 2XL . . . C 2 -24.401 11.51 -4.088 1 29.71 ? C5 2XL 301 A 1 HETATM 26 C C4 2XL . . . C 2 -24.905 10.209 -4.19 1 29.6 ? C4 2XL 301 A 1 HETATM 27 N NAD 2XL . . . C 2 -24.123 9.16 -4.541 1 29.16 ? NAD 2XL 301 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #