data_4Q1B # _model_server_result.job_id P1d3xwxZZrangpyplYhkDg _model_server_result.datetime_utc '2024-11-22 20:44:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q1b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4Q1B # _exptl.entry_id 4Q1B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 494.654 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(2-(3-(4-(((4,6-diaminopyrimidin-2-yl)thio)methyl)-5-propylthiazol-2-yl)phenoxy)ethyl)methanesulfonamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Q1B _cell.length_a 68.968 _cell.length_b 68.968 _cell.length_c 121.944 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q1B _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C20 H26 N6 O3 S3' _chem_comp.formula_weight 494.654 _chem_comp.id 2Y0 _chem_comp.mon_nstd_flag . _chem_comp.name N-(2-(3-(4-(((4,6-diaminopyrimidin-2-yl)thio)methyl)-5-propylthiazol-2-yl)phenoxy)ethyl)methanesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-{2-[3-(4-{[(4,6-diaminopyrimidin-2-yl)sulfanyl]methyl}-5-propyl-1,3-thiazol-2-yl)phenoxy]ethyl}methanesulfonamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAL 2Y0 sing 1 n n CAL CAO 2Y0 sing 2 n n CAO CBD 2Y0 sing 3 n n SAW CBD 2Y0 sing 4 n y SAW CBE 2Y0 sing 5 n y CBD CBC 2Y0 doub 6 n y CAI CAG 2Y0 doub 7 n y CAI CBA 2Y0 sing 8 n y NAC C6 2Y0 sing 9 n n CAG CAH 2Y0 sing 10 n y C6 N1 2Y0 doub 11 n y C6 C5 2Y0 sing 12 n y N1 C2 2Y0 sing 13 n y C5 C4 2Y0 doub 14 n y CBE CBA 2Y0 sing 15 n n CBE NAS 2Y0 doub 16 n y C2 SAV 2Y0 sing 17 n n C2 N3 2Y0 doub 18 n y C4 N3 2Y0 sing 19 n y C4 NAD 2Y0 sing 20 n n SAV CAP 2Y0 sing 21 n n CBA CAK 2Y0 doub 22 n y CBC NAS 2Y0 sing 23 n y CBC CAP 2Y0 sing 24 n n CAH CAZ 2Y0 doub 25 n y CAK CAZ 2Y0 sing 26 n y CAZ OAU 2Y0 sing 27 n n OAU CAN 2Y0 sing 28 n n CAN CAM 2Y0 sing 29 n n CAM NAT 2Y0 sing 30 n n NAT SBF 2Y0 sing 31 n n CAB SBF 2Y0 sing 32 n n SBF OAF 2Y0 doub 33 n n SBF OAE 2Y0 doub 34 n n CAB H1 2Y0 sing 35 n n CAB H2 2Y0 sing 36 n n CAB H3 2Y0 sing 37 n n NAT H4 2Y0 sing 38 n n CAM H5 2Y0 sing 39 n n CAM H6 2Y0 sing 40 n n CAN H7 2Y0 sing 41 n n CAN H8 2Y0 sing 42 n n CAK H9 2Y0 sing 43 n n CAH H10 2Y0 sing 44 n n CAG H11 2Y0 sing 45 n n CAI H12 2Y0 sing 46 n n CAO H13 2Y0 sing 47 n n CAO H14 2Y0 sing 48 n n CAL H15 2Y0 sing 49 n n CAL H16 2Y0 sing 50 n n CAA H17 2Y0 sing 51 n n CAA H18 2Y0 sing 52 n n CAA H19 2Y0 sing 53 n n CAP H20 2Y0 sing 54 n n CAP H21 2Y0 sing 55 n n NAC H22 2Y0 sing 56 n n NAC H23 2Y0 sing 57 n n C5 H24 2Y0 sing 58 n n NAD H25 2Y0 sing 59 n n NAD H26 2Y0 sing 60 n n # _atom_sites.entry_id 4Q1B _atom_sites.fract_transf_matrix[1][1] 0.014499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014499 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0082 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2Y0 A 1 301 301 2Y0 DRG . D 3 UDP A 1 302 401 UDP UDP . E 2 2Y0 B 1 301 301 2Y0 DRG . F 3 UDP B 1 302 401 UDP UDP . G 4 HOH A 1 401 2 HOH HOH . G 4 HOH A 2 402 3 HOH HOH . G 4 HOH A 3 403 6 HOH HOH . G 4 HOH A 4 404 10 HOH HOH . G 4 HOH A 5 405 18 HOH HOH . G 4 HOH A 6 406 19 HOH HOH . G 4 HOH A 7 407 23 HOH HOH . G 4 HOH A 8 408 25 HOH HOH . G 4 HOH A 9 409 26 HOH HOH . G 4 HOH A 10 410 27 HOH HOH . G 4 HOH A 11 411 31 HOH HOH . G 4 HOH A 12 412 32 HOH HOH . G 4 HOH A 13 413 34 HOH HOH . G 4 HOH A 14 414 35 HOH HOH . G 4 HOH A 15 415 39 HOH HOH . G 4 HOH A 16 416 40 HOH HOH . G 4 HOH A 17 417 43 HOH HOH . G 4 HOH A 18 418 50 HOH HOH . G 4 HOH A 19 419 52 HOH HOH . G 4 HOH A 20 420 53 HOH HOH . G 4 HOH A 21 421 55 HOH HOH . G 4 HOH A 22 422 57 HOH HOH . G 4 HOH A 23 423 60 HOH HOH . G 4 HOH A 24 424 61 HOH HOH . G 4 HOH A 25 425 62 HOH HOH . G 4 HOH A 26 426 63 HOH HOH . G 4 HOH A 27 427 64 HOH HOH . G 4 HOH A 28 428 65 HOH HOH . G 4 HOH A 29 429 66 HOH HOH . G 4 HOH A 30 430 80 HOH HOH . G 4 HOH A 31 431 81 HOH HOH . G 4 HOH A 32 432 82 HOH HOH . G 4 HOH A 33 433 83 HOH HOH . G 4 HOH A 34 434 84 HOH HOH . G 4 HOH A 35 435 85 HOH HOH . G 4 HOH A 36 436 86 HOH HOH . G 4 HOH A 37 437 87 HOH HOH . G 4 HOH A 38 438 88 HOH HOH . G 4 HOH A 39 439 90 HOH HOH . H 4 HOH B 1 401 1 HOH HOH . H 4 HOH B 2 402 4 HOH HOH . H 4 HOH B 3 403 5 HOH HOH . H 4 HOH B 4 404 7 HOH HOH . H 4 HOH B 5 405 8 HOH HOH . H 4 HOH B 6 406 9 HOH HOH . H 4 HOH B 7 407 11 HOH HOH . H 4 HOH B 8 408 12 HOH HOH . H 4 HOH B 9 409 13 HOH HOH . H 4 HOH B 10 410 14 HOH HOH . H 4 HOH B 11 411 15 HOH HOH . H 4 HOH B 12 412 16 HOH HOH . H 4 HOH B 13 413 17 HOH HOH . H 4 HOH B 14 414 20 HOH HOH . H 4 HOH B 15 415 21 HOH HOH . H 4 HOH B 16 416 22 HOH HOH . H 4 HOH B 17 417 24 HOH HOH . H 4 HOH B 18 418 28 HOH HOH . H 4 HOH B 19 419 29 HOH HOH . H 4 HOH B 20 420 30 HOH HOH . H 4 HOH B 21 421 33 HOH HOH . H 4 HOH B 22 422 36 HOH HOH . H 4 HOH B 23 423 37 HOH HOH . H 4 HOH B 24 424 38 HOH HOH . H 4 HOH B 25 425 41 HOH HOH . H 4 HOH B 26 426 42 HOH HOH . H 4 HOH B 27 427 44 HOH HOH . H 4 HOH B 28 428 45 HOH HOH . H 4 HOH B 29 429 46 HOH HOH . H 4 HOH B 30 430 47 HOH HOH . H 4 HOH B 31 431 48 HOH HOH . H 4 HOH B 32 432 49 HOH HOH . H 4 HOH B 33 433 51 HOH HOH . H 4 HOH B 34 434 54 HOH HOH . H 4 HOH B 35 435 56 HOH HOH . H 4 HOH B 36 436 58 HOH HOH . H 4 HOH B 37 437 59 HOH HOH . H 4 HOH B 38 438 67 HOH HOH . H 4 HOH B 39 439 68 HOH HOH . H 4 HOH B 40 440 69 HOH HOH . H 4 HOH B 41 441 70 HOH HOH . H 4 HOH B 42 442 71 HOH HOH . H 4 HOH B 43 443 72 HOH HOH . H 4 HOH B 44 444 73 HOH HOH . H 4 HOH B 45 445 74 HOH HOH . H 4 HOH B 46 446 75 HOH HOH . H 4 HOH B 47 447 76 HOH HOH . H 4 HOH B 48 448 77 HOH HOH . H 4 HOH B 49 449 78 HOH HOH . H 4 HOH B 50 450 79 HOH HOH . H 4 HOH B 51 451 89 HOH HOH . H 4 HOH B 52 452 91 HOH HOH . H 4 HOH B 53 453 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAB 2Y0 . . . C 2 -37.708 10.231 3.29 1 80.57 ? CAB 2Y0 301 A 1 HETATM 2 S SBF 2Y0 . . . C 2 -36.446 9 3.556 1 93.22 ? SBF 2Y0 301 A 1 HETATM 3 O OAE 2Y0 . . . C 2 -37.019 7.889 4.446 1 89.89 ? OAE 2Y0 301 A 1 HETATM 4 O OAF 2Y0 . . . C 2 -35.261 9.643 4.277 1 91.42 ? OAF 2Y0 301 A 1 HETATM 5 N NAT 2Y0 . . . C 2 -35.84 8.312 2 1 86.29 ? NAT 2Y0 301 A 1 HETATM 6 C CAM 2Y0 . . . C 2 -36.736 8.55 0.848 1 82.41 ? CAM 2Y0 301 A 1 HETATM 7 C CAN 2Y0 . . . C 2 -36.001 9.008 -0.432 1 73.56 ? CAN 2Y0 301 A 1 HETATM 8 O OAU 2Y0 . . . C 2 -36.937 9.703 -1.297 1 58.68 ? OAU 2Y0 301 A 1 HETATM 9 C CAZ 2Y0 . . . C 2 -36.557 10.516 -2.337 1 55.47 ? CAZ 2Y0 301 A 1 HETATM 10 C CAK 2Y0 . . . C 2 -35.227 10.925 -2.58 1 55.62 ? CAK 2Y0 301 A 1 HETATM 11 C CAH 2Y0 . . . C 2 -37.581 10.969 -3.17 1 51.14 ? CAH 2Y0 301 A 1 HETATM 12 C CAG 2Y0 . . . C 2 -37.298 11.82 -4.227 1 54.51 ? CAG 2Y0 301 A 1 HETATM 13 C CAI 2Y0 . . . C 2 -35.983 12.221 -4.469 1 50.26 ? CAI 2Y0 301 A 1 HETATM 14 C CBA 2Y0 . . . C 2 -34.928 11.785 -3.656 1 54.22 ? CBA 2Y0 301 A 1 HETATM 15 C CBE 2Y0 . . . C 2 -33.668 12.22 -3.902 1 50.32 ? CBE 2Y0 301 A 1 HETATM 16 N NAS 2Y0 . . . C 2 -32.587 11.965 -3.161 1 48.95 ? NAS 2Y0 301 A 1 HETATM 17 S SAW 2Y0 . . . C 2 -33.208 13.211 -5.14 1 55.81 ? SAW 2Y0 301 A 1 HETATM 18 C CBD 2Y0 . . . C 2 -31.687 13.28 -4.734 1 50.34 ? CBD 2Y0 301 A 1 HETATM 19 C CAO 2Y0 . . . C 2 -30.614 14.047 -5.501 1 52.05 ? CAO 2Y0 301 A 1 HETATM 20 C CAL 2Y0 . . . C 2 -30.991 15.499 -5.527 1 50.76 ? CAL 2Y0 301 A 1 HETATM 21 C CAA 2Y0 . . . C 2 -29.958 16.239 -6.368 1 56.53 ? CAA 2Y0 301 A 1 HETATM 22 C CBC 2Y0 . . . C 2 -31.494 12.557 -3.647 1 47.33 ? CBC 2Y0 301 A 1 HETATM 23 C CAP 2Y0 . . . C 2 -30.121 12.382 -3.023 1 52.48 ? CAP 2Y0 301 A 1 HETATM 24 S SAV 2Y0 . . . C 2 -29.328 10.893 -3.772 1 52.45 ? SAV 2Y0 301 A 1 HETATM 25 C C2 2Y0 . . . C 2 -27.617 11.358 -3.862 1 48.22 ? C2 2Y0 301 A 1 HETATM 26 N N3 2Y0 . . . C 2 -27.257 12.63 -3.752 1 44.93 ? N3 2Y0 301 A 1 HETATM 27 N N1 2Y0 . . . C 2 -26.676 10.416 -4.021 1 46.57 ? N1 2Y0 301 A 1 HETATM 28 C C6 2Y0 . . . C 2 -25.363 10.724 -4.081 1 49.56 ? C6 2Y0 301 A 1 HETATM 29 N NAC 2Y0 . . . C 2 -24.458 9.76 -4.246 1 45.22 ? NAC 2Y0 301 A 1 HETATM 30 C C5 2Y0 . . . C 2 -24.961 12.051 -3.982 1 49.83 ? C5 2Y0 301 A 1 HETATM 31 C C4 2Y0 . . . C 2 -25.968 12.997 -3.803 1 48.53 ? C4 2Y0 301 A 1 HETATM 32 N NAD 2Y0 . . . C 2 -25.657 14.282 -3.695 1 51.7 ? NAD 2Y0 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #