data_4Q1C # _model_server_result.job_id 04OWXpf4t-Ql5pmemQxAYg _model_server_result.datetime_utc '2024-11-17 06:35:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q1c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 4Q1C # _exptl.entry_id 4Q1C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 477.6 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2,2'-((4-(4-(((4,6-diaminopyrimidin-2-yl)thio)methyl)-5-propylthiazol-2-yl)-1,2-phenylene)bis(oxy))bis(ethan-1-ol)" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Q1C _cell.length_a 68.661 _cell.length_b 68.661 _cell.length_c 119.277 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q1C _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H27 N5 O4 S2' _chem_comp.formula_weight 477.6 _chem_comp.id 2XM _chem_comp.mon_nstd_flag . _chem_comp.name "2,2'-((4-(4-(((4,6-diaminopyrimidin-2-yl)thio)methyl)-5-propylthiazol-2-yl)-1,2-phenylene)bis(oxy))bis(ethan-1-ol)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2,2'-{[4-(4-{[(4,6-diaminopyrimidin-2-yl)sulfanyl]methyl}-5-propyl-1,3-thiazol-2-yl)benzene-1,2-diyl]bis(oxy)}diethanol" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAO CBE 2XM sing 1 n n CAO CAJ 2XM sing 2 n n SAW CBE 2XM sing 3 n y SAW CBF 2XM sing 4 n y CAA CAJ 2XM sing 5 n n CAK OAD 2XM sing 6 n n CAK CAM 2XM sing 7 n n CBE CBD 2XM doub 8 n y CAF CAG 2XM doub 9 n y CAF CAZ 2XM sing 10 n y CAG CBB 2XM sing 11 n y NAC C4 2XM sing 12 n n C5 C4 2XM doub 13 n y C5 C6 2XM sing 14 n y C4 N3 2XM sing 15 n y CBF CAZ 2XM sing 16 n n CBF NAS 2XM doub 17 n y NAB C6 2XM sing 18 n n C6 N1 2XM doub 19 n y CAZ CAI 2XM doub 20 n y N3 C2 2XM doub 21 n y CAM OAT 2XM sing 22 n n N1 C2 2XM sing 23 n y C2 SAV 2XM sing 24 n n CBB OAT 2XM sing 25 n n CBB CBC 2XM doub 26 n y CBD NAS 2XM sing 27 n y CBD CAP 2XM sing 28 n n SAV CAP 2XM sing 29 n n CAI CBC 2XM sing 30 n y CBC OAU 2XM sing 31 n n OAU CAN 2XM sing 32 n n CAN CAL 2XM sing 33 n n CAL OAE 2XM sing 34 n n OAE H1 2XM sing 35 n n CAL H2 2XM sing 36 n n CAL H3 2XM sing 37 n n CAN H4 2XM sing 38 n n CAN H5 2XM sing 39 n n CAI H6 2XM sing 40 n n CAM H7 2XM sing 41 n n CAM H8 2XM sing 42 n n CAK H9 2XM sing 43 n n CAK H10 2XM sing 44 n n OAD H11 2XM sing 45 n n CAG H12 2XM sing 46 n n CAF H13 2XM sing 47 n n CAO H14 2XM sing 48 n n CAO H15 2XM sing 49 n n CAJ H16 2XM sing 50 n n CAJ H17 2XM sing 51 n n CAA H18 2XM sing 52 n n CAA H19 2XM sing 53 n n CAA H20 2XM sing 54 n n CAP H21 2XM sing 55 n n CAP H22 2XM sing 56 n n NAB H23 2XM sing 57 n n NAB H24 2XM sing 58 n n C5 H25 2XM sing 59 n n NAC H26 2XM sing 60 n n NAC H27 2XM sing 61 n n # _atom_sites.entry_id 4Q1C _atom_sites.fract_transf_matrix[1][1] 0.014564 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014564 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008384 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2XM A 1 301 301 2XM 2XM . D 3 UDP A 1 302 401 UDP UDP . E 2 2XM B 1 301 301 2XM 2XM . F 3 UDP B 1 302 401 UDP UDP . G 4 HOH A 1 401 2 HOH HOH . G 4 HOH A 2 402 3 HOH HOH . G 4 HOH A 3 403 5 HOH HOH . G 4 HOH A 4 404 6 HOH HOH . G 4 HOH A 5 405 7 HOH HOH . G 4 HOH A 6 406 9 HOH HOH . G 4 HOH A 7 407 13 HOH HOH . G 4 HOH A 8 408 14 HOH HOH . G 4 HOH A 9 409 21 HOH HOH . G 4 HOH A 10 410 22 HOH HOH . G 4 HOH A 11 411 23 HOH HOH . G 4 HOH A 12 412 27 HOH HOH . G 4 HOH A 13 413 29 HOH HOH . G 4 HOH A 14 414 30 HOH HOH . G 4 HOH A 15 415 31 HOH HOH . G 4 HOH A 16 416 32 HOH HOH . G 4 HOH A 17 417 33 HOH HOH . G 4 HOH A 18 418 36 HOH HOH . G 4 HOH A 19 419 37 HOH HOH . G 4 HOH A 20 420 39 HOH HOH . G 4 HOH A 21 421 40 HOH HOH . G 4 HOH A 22 422 44 HOH HOH . G 4 HOH A 23 423 45 HOH HOH . G 4 HOH A 24 424 48 HOH HOH . G 4 HOH A 25 425 49 HOH HOH . G 4 HOH A 26 426 55 HOH HOH . G 4 HOH A 27 427 56 HOH HOH . G 4 HOH A 28 428 57 HOH HOH . G 4 HOH A 29 429 59 HOH HOH . G 4 HOH A 30 430 61 HOH HOH . G 4 HOH A 31 431 64 HOH HOH . G 4 HOH A 32 432 65 HOH HOH . G 4 HOH A 33 433 66 HOH HOH . G 4 HOH A 34 434 67 HOH HOH . G 4 HOH A 35 435 68 HOH HOH . G 4 HOH A 36 436 69 HOH HOH . G 4 HOH A 37 437 70 HOH HOH . G 4 HOH A 38 438 71 HOH HOH . G 4 HOH A 39 439 72 HOH HOH . G 4 HOH A 40 440 73 HOH HOH . G 4 HOH A 41 441 74 HOH HOH . G 4 HOH A 42 442 75 HOH HOH . G 4 HOH A 43 443 91 HOH HOH . G 4 HOH A 44 444 92 HOH HOH . G 4 HOH A 45 445 93 HOH HOH . G 4 HOH A 46 446 95 HOH HOH . G 4 HOH A 47 447 97 HOH HOH . G 4 HOH A 48 448 98 HOH HOH . G 4 HOH A 49 449 99 HOH HOH . G 4 HOH A 50 450 100 HOH HOH . G 4 HOH A 51 451 101 HOH HOH . G 4 HOH A 52 452 103 HOH HOH . G 4 HOH A 53 453 104 HOH HOH . G 4 HOH A 54 454 105 HOH HOH . G 4 HOH A 55 455 107 HOH HOH . G 4 HOH A 56 456 108 HOH HOH . H 4 HOH B 1 401 96 HOH HOH . H 4 HOH B 2 402 1 HOH HOH . H 4 HOH B 3 403 4 HOH HOH . H 4 HOH B 4 404 8 HOH HOH . H 4 HOH B 5 405 10 HOH HOH . H 4 HOH B 6 406 11 HOH HOH . H 4 HOH B 7 407 12 HOH HOH . H 4 HOH B 8 408 15 HOH HOH . H 4 HOH B 9 409 16 HOH HOH . H 4 HOH B 10 410 17 HOH HOH . H 4 HOH B 11 411 18 HOH HOH . H 4 HOH B 12 412 19 HOH HOH . H 4 HOH B 13 413 20 HOH HOH . H 4 HOH B 14 414 24 HOH HOH . H 4 HOH B 15 415 25 HOH HOH . H 4 HOH B 16 416 26 HOH HOH . H 4 HOH B 17 417 28 HOH HOH . H 4 HOH B 18 418 34 HOH HOH . H 4 HOH B 19 419 35 HOH HOH . H 4 HOH B 20 420 38 HOH HOH . H 4 HOH B 21 421 41 HOH HOH . H 4 HOH B 22 422 42 HOH HOH . H 4 HOH B 23 423 43 HOH HOH . H 4 HOH B 24 424 46 HOH HOH . H 4 HOH B 25 425 47 HOH HOH . H 4 HOH B 26 426 50 HOH HOH . H 4 HOH B 27 427 51 HOH HOH . H 4 HOH B 28 428 52 HOH HOH . H 4 HOH B 29 429 53 HOH HOH . H 4 HOH B 30 430 54 HOH HOH . H 4 HOH B 31 431 58 HOH HOH . H 4 HOH B 32 432 60 HOH HOH . H 4 HOH B 33 433 62 HOH HOH . H 4 HOH B 34 434 63 HOH HOH . H 4 HOH B 35 435 76 HOH HOH . H 4 HOH B 36 436 77 HOH HOH . H 4 HOH B 37 437 78 HOH HOH . H 4 HOH B 38 438 80 HOH HOH . H 4 HOH B 39 439 81 HOH HOH . H 4 HOH B 40 440 82 HOH HOH . H 4 HOH B 41 441 83 HOH HOH . H 4 HOH B 42 442 84 HOH HOH . H 4 HOH B 43 443 85 HOH HOH . H 4 HOH B 44 444 86 HOH HOH . H 4 HOH B 45 445 87 HOH HOH . H 4 HOH B 46 446 88 HOH HOH . H 4 HOH B 47 447 89 HOH HOH . H 4 HOH B 48 448 90 HOH HOH . H 4 HOH B 49 449 94 HOH HOH . H 4 HOH B 50 450 102 HOH HOH . H 4 HOH B 51 451 106 HOH HOH . H 4 HOH B 52 452 79 HOH HOH . H 4 HOH B 53 453 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAE 2XM . . . E 2 -35.695 -7.975 -26.454 1 29.96 ? OAE 2XM 301 B 1 HETATM 2 C CAL 2XM . . . E 2 -36.38 -7.983 -25.214 1 29.49 ? CAL 2XM 301 B 1 HETATM 3 C CAN 2XM . . . E 2 -35.519 -8.772 -24.209 1 29.34 ? CAN 2XM 301 B 1 HETATM 4 O OAU 2XM . . . E 2 -36.189 -9.991 -24.011 1 29.61 ? OAU 2XM 301 B 1 HETATM 5 C CBC 2XM . . . E 2 -35.681 -10.856 -23.069 1 29.86 ? CBC 2XM 301 B 1 HETATM 6 C CAI 2XM . . . E 2 -34.317 -11.155 -22.892 1 29.32 ? CAI 2XM 301 B 1 HETATM 7 C CBB 2XM . . . E 2 -36.638 -11.46 -22.298 1 29.55 ? CBB 2XM 301 B 1 HETATM 8 O OAT 2XM . . . E 2 -37.924 -11.088 -22.579 1 29.92 ? OAT 2XM 301 B 1 HETATM 9 C CAM 2XM . . . E 2 -38.925 -11.333 -21.608 1 29.15 ? CAM 2XM 301 B 1 HETATM 10 C CAK 2XM . . . E 2 -40.18 -11.395 -22.49 1 29.38 ? CAK 2XM 301 B 1 HETATM 11 O OAD 2XM . . . E 2 -39.97 -10.457 -23.567 1 30.06 ? OAD 2XM 301 B 1 HETATM 12 C CAG 2XM . . . E 2 -36.299 -12.387 -21.337 1 29.63 ? CAG 2XM 301 B 1 HETATM 13 C CAF 2XM . . . E 2 -34.96 -12.702 -21.152 1 29.71 ? CAF 2XM 301 B 1 HETATM 14 C CAZ 2XM . . . E 2 -33.97 -12.085 -21.915 1 30 ? CAZ 2XM 301 B 1 HETATM 15 C CBF 2XM . . . E 2 -32.698 -12.447 -21.726 1 28.91 ? CBF 2XM 301 B 1 HETATM 16 N NAS 2XM . . . E 2 -31.765 -12.19 -22.601 1 29.27 ? NAS 2XM 301 B 1 HETATM 17 S SAW 2XM . . . E 2 -32.102 -13.37 -20.539 1 29.61 ? SAW 2XM 301 B 1 HETATM 18 C CBE 2XM . . . E 2 -30.524 -13.348 -21.138 1 29.47 ? CBE 2XM 301 B 1 HETATM 19 C CAO 2XM . . . E 2 -29.327 -13.982 -20.505 1 29.51 ? CAO 2XM 301 B 1 HETATM 20 C CAJ 2XM . . . E 2 -29.221 -15.38 -21.029 1 29.74 ? CAJ 2XM 301 B 1 HETATM 21 C CAA 2XM . . . E 2 -30.107 -16.245 -20.156 1 29.83 ? CAA 2XM 301 B 1 HETATM 22 C CBD 2XM . . . E 2 -30.555 -12.648 -22.279 1 29.6 ? CBD 2XM 301 B 1 HETATM 23 C CAP 2XM . . . E 2 -29.378 -12.387 -23.153 1 29.62 ? CAP 2XM 301 B 1 HETATM 24 S SAV 2XM . . . E 2 -28.658 -10.76 -22.66 1 29.22 ? SAV 2XM 301 B 1 HETATM 25 C C2 2XM . . . E 2 -26.998 -11.135 -22.331 1 29.42 ? C2 2XM 301 B 1 HETATM 26 N N3 2XM . . . E 2 -26.111 -10.129 -22.093 1 28.65 ? N3 2XM 301 B 1 HETATM 27 N N1 2XM . . . E 2 -26.63 -12.404 -22.32 1 29.11 ? N1 2XM 301 B 1 HETATM 28 C C6 2XM . . . E 2 -25.35 -12.731 -22.092 1 29.48 ? C6 2XM 301 B 1 HETATM 29 N NAB 2XM . . . E 2 -25.045 -14.026 -22.09 1 28.96 ? NAB 2XM 301 B 1 HETATM 30 C C5 2XM . . . E 2 -24.397 -11.733 -21.853 1 29.09 ? C5 2XM 301 B 1 HETATM 31 C C4 2XM . . . E 2 -24.816 -10.394 -21.864 1 29.4 ? C4 2XM 301 B 1 HETATM 32 N NAC 2XM . . . E 2 -23.976 -9.359 -21.687 1 28.91 ? NAC 2XM 301 B 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 377 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #