data_4Q1D # _model_server_result.job_id 12Vn8eB0MA5Q5ZS-nXqecg _model_server_result.datetime_utc '2024-11-22 20:14:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q1d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 4Q1D # _exptl.entry_id 4Q1D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 463.592 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (R)-2-((1-(2-(3-(2-fluoroethoxy)-4-methoxyphenyl)-5-propylthiazol-4-yl)ethyl)thio)pyrimidine-4,6-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Q1D _cell.length_a 68.734 _cell.length_b 68.734 _cell.length_c 120.623 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q1D _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H26 F N5 O2 S2' _chem_comp.formula_weight 463.592 _chem_comp.id 2Y1 _chem_comp.mon_nstd_flag . _chem_comp.name (R)-2-((1-(2-(3-(2-fluoroethoxy)-4-methoxyphenyl)-5-propylthiazol-4-yl)ethyl)thio)pyrimidine-4,6-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-{[(1R)-1-{2-[3-(2-fluoroethoxy)-4-methoxyphenyl]-5-propyl-1,3-thiazol-4-yl}ethyl]sulfanyl}pyrimidine-4,6-diamine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAK CAN 2Y1 sing 1 n n CAK CAA 2Y1 sing 2 n n CAN CBB 2Y1 sing 3 n n SAU CBB 2Y1 sing 4 n y SAU CBC 2Y1 sing 5 n y CBB CBD 2Y1 doub 6 n y C5 C6 2Y1 doub 7 n y C5 C4 2Y1 sing 8 n y NAD C6 2Y1 sing 9 n n NAE C4 2Y1 sing 10 n n CAG CAH 2Y1 doub 11 n y CAG CAX 2Y1 sing 12 n y C6 N1 2Y1 sing 13 n y C4 N3 2Y1 doub 14 n y CBC CAX 2Y1 sing 15 n n CBC NAQ 2Y1 doub 16 n y N1 C2 2Y1 doub 17 n y N3 C2 2Y1 sing 18 n y CAH CAY 2Y1 sing 19 n y CAX CAJ 2Y1 doub 20 n y C2 SAT 2Y1 sing 21 n n CAB OAR 2Y1 sing 22 n n CBD NAQ 2Y1 sing 23 n y CBD CBE 2Y1 sing 24 n n SAT CBE 2Y1 sing 25 n n CAY OAR 2Y1 sing 26 n n CAY CAZ 2Y1 doub 27 n y CAJ CAZ 2Y1 sing 28 n y CAZ OAS 2Y1 sing 29 n n CBE CAC 2Y1 sing 30 n n OAS CAM 2Y1 sing 31 n n CAM CAL 2Y1 sing 32 n n CAL FAF 2Y1 sing 33 n n CAL H1 2Y1 sing 34 n n CAL H2 2Y1 sing 35 n n CAM H3 2Y1 sing 36 n n CAM H4 2Y1 sing 37 n n CAJ H5 2Y1 sing 38 n n CAB H6 2Y1 sing 39 n n CAB H7 2Y1 sing 40 n n CAB H8 2Y1 sing 41 n n CAH H9 2Y1 sing 42 n n CAG H10 2Y1 sing 43 n n CAN H11 2Y1 sing 44 n n CAN H12 2Y1 sing 45 n n CAK H13 2Y1 sing 46 n n CAK H14 2Y1 sing 47 n n CAA H15 2Y1 sing 48 n n CAA H16 2Y1 sing 49 n n CAA H17 2Y1 sing 50 n n CBE H18 2Y1 sing 51 n n CAC H19 2Y1 sing 52 n n CAC H20 2Y1 sing 53 n n CAC H21 2Y1 sing 54 n n NAD H22 2Y1 sing 55 n n NAD H23 2Y1 sing 56 n n C5 H24 2Y1 sing 57 n n NAE H25 2Y1 sing 58 n n NAE H26 2Y1 sing 59 n n # _atom_sites.entry_id 4Q1D _atom_sites.fract_transf_matrix[1][1] 0.014549 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014549 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00829 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2Y1 A 1 301 301 2Y1 DRR . D 3 UDP A 1 302 401 UDP UDP . E 2 2Y1 B 1 301 301 2Y1 DRR . F 3 UDP B 1 302 401 UDP UDP . G 4 HOH A 1 401 1 HOH HOH . G 4 HOH A 2 402 3 HOH HOH . G 4 HOH A 3 403 4 HOH HOH . G 4 HOH A 4 404 5 HOH HOH . G 4 HOH A 5 405 6 HOH HOH . G 4 HOH A 6 406 7 HOH HOH . G 4 HOH A 7 407 8 HOH HOH . G 4 HOH A 8 408 9 HOH HOH . G 4 HOH A 9 409 10 HOH HOH . G 4 HOH A 10 410 11 HOH HOH . G 4 HOH A 11 411 12 HOH HOH . G 4 HOH A 12 412 13 HOH HOH . G 4 HOH A 13 413 14 HOH HOH . G 4 HOH A 14 414 15 HOH HOH . G 4 HOH A 15 415 16 HOH HOH . G 4 HOH A 16 416 17 HOH HOH . G 4 HOH A 17 417 18 HOH HOH . G 4 HOH A 18 418 19 HOH HOH . G 4 HOH A 19 419 20 HOH HOH . G 4 HOH A 20 420 21 HOH HOH . G 4 HOH A 21 421 22 HOH HOH . G 4 HOH A 22 422 23 HOH HOH . G 4 HOH A 23 423 24 HOH HOH . G 4 HOH A 24 424 25 HOH HOH . G 4 HOH A 25 425 26 HOH HOH . G 4 HOH A 26 426 27 HOH HOH . G 4 HOH A 27 427 28 HOH HOH . G 4 HOH A 28 428 29 HOH HOH . G 4 HOH A 29 429 30 HOH HOH . G 4 HOH A 30 430 31 HOH HOH . G 4 HOH A 31 431 32 HOH HOH . G 4 HOH A 32 432 33 HOH HOH . G 4 HOH A 33 433 34 HOH HOH . G 4 HOH A 34 434 35 HOH HOH . G 4 HOH A 35 435 36 HOH HOH . G 4 HOH A 36 436 37 HOH HOH . G 4 HOH A 37 437 38 HOH HOH . G 4 HOH A 38 438 40 HOH HOH . G 4 HOH A 39 439 60 HOH HOH . G 4 HOH A 40 440 80 HOH HOH . G 4 HOH A 41 441 81 HOH HOH . G 4 HOH A 42 442 82 HOH HOH . G 4 HOH A 43 443 83 HOH HOH . G 4 HOH A 44 444 84 HOH HOH . G 4 HOH A 45 445 85 HOH HOH . G 4 HOH A 46 446 86 HOH HOH . G 4 HOH A 47 447 90 HOH HOH . G 4 HOH A 48 448 91 HOH HOH . G 4 HOH A 49 449 92 HOH HOH . H 4 HOH B 1 401 2 HOH HOH . H 4 HOH B 2 402 39 HOH HOH . H 4 HOH B 3 403 41 HOH HOH . H 4 HOH B 4 404 42 HOH HOH . H 4 HOH B 5 405 43 HOH HOH . H 4 HOH B 6 406 44 HOH HOH . H 4 HOH B 7 407 45 HOH HOH . H 4 HOH B 8 408 46 HOH HOH . H 4 HOH B 9 409 47 HOH HOH . H 4 HOH B 10 410 48 HOH HOH . H 4 HOH B 11 411 49 HOH HOH . H 4 HOH B 12 412 50 HOH HOH . H 4 HOH B 13 413 51 HOH HOH . H 4 HOH B 14 414 52 HOH HOH . H 4 HOH B 15 415 53 HOH HOH . H 4 HOH B 16 416 54 HOH HOH . H 4 HOH B 17 417 55 HOH HOH . H 4 HOH B 18 418 56 HOH HOH . H 4 HOH B 19 419 57 HOH HOH . H 4 HOH B 20 420 58 HOH HOH . H 4 HOH B 21 421 59 HOH HOH . H 4 HOH B 22 422 61 HOH HOH . H 4 HOH B 23 423 62 HOH HOH . H 4 HOH B 24 424 63 HOH HOH . H 4 HOH B 25 425 64 HOH HOH . H 4 HOH B 26 426 65 HOH HOH . H 4 HOH B 27 427 66 HOH HOH . H 4 HOH B 28 428 67 HOH HOH . H 4 HOH B 29 429 68 HOH HOH . H 4 HOH B 30 430 69 HOH HOH . H 4 HOH B 31 431 70 HOH HOH . H 4 HOH B 32 432 71 HOH HOH . H 4 HOH B 33 433 72 HOH HOH . H 4 HOH B 34 434 73 HOH HOH . H 4 HOH B 35 435 74 HOH HOH . H 4 HOH B 36 436 75 HOH HOH . H 4 HOH B 37 437 76 HOH HOH . H 4 HOH B 38 438 77 HOH HOH . H 4 HOH B 39 439 78 HOH HOH . H 4 HOH B 40 440 79 HOH HOH . H 4 HOH B 41 441 87 HOH HOH . H 4 HOH B 42 442 88 HOH HOH . H 4 HOH B 43 443 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F FAF 2Y1 . . . E 2 -8.284 36.348 -26.56 1 60.62 ? FAF 2Y1 301 B 1 HETATM 2 C CAL 2Y1 . . . E 2 -7.476 36.773 -25.616 1 57.63 ? CAL 2Y1 301 B 1 HETATM 3 C CAM 2Y1 . . . E 2 -8.327 36.831 -24.378 1 55.68 ? CAM 2Y1 301 B 1 HETATM 4 O OAS 2Y1 . . . E 2 -9.613 36.34 -24.794 1 54.31 ? OAS 2Y1 301 B 1 HETATM 5 C CAZ 2Y1 . . . E 2 -10.534 36.041 -23.783 1 54.64 ? CAZ 2Y1 301 B 1 HETATM 6 C CAJ 2Y1 . . . E 2 -10.936 34.724 -23.523 1 56.63 ? CAJ 2Y1 301 B 1 HETATM 7 C CAY 2Y1 . . . E 2 -11.041 37.112 -23.05 1 54.57 ? CAY 2Y1 301 B 1 HETATM 8 O OAR 2Y1 . . . E 2 -10.572 38.389 -23.406 1 57.63 ? OAR 2Y1 301 B 1 HETATM 9 C CAB 2Y1 . . . E 2 -10.825 39.466 -22.485 1 55.15 ? CAB 2Y1 301 B 1 HETATM 10 C CAH 2Y1 . . . E 2 -11.967 36.869 -22.029 1 56.88 ? CAH 2Y1 301 B 1 HETATM 11 C CAG 2Y1 . . . E 2 -12.376 35.559 -21.77 1 56.75 ? CAG 2Y1 301 B 1 HETATM 12 C CAX 2Y1 . . . E 2 -11.859 34.48 -22.498 1 53.49 ? CAX 2Y1 301 B 1 HETATM 13 C CBC 2Y1 . . . E 2 -12.334 33.168 -22.2 1 52.99 ? CBC 2Y1 301 B 1 HETATM 14 N NAQ 2Y1 . . . E 2 -12.13 32.051 -22.92 1 50.21 ? NAQ 2Y1 301 B 1 HETATM 15 S SAU 2Y1 . . . E 2 -13.344 32.79 -20.908 1 59.78 ? SAU 2Y1 301 B 1 HETATM 16 C CBB 2Y1 . . . E 2 -13.474 31.17 -21.269 1 56.48 ? CBB 2Y1 301 B 1 HETATM 17 C CAN 2Y1 . . . E 2 -14.26 30.211 -20.418 1 58 ? CAN 2Y1 301 B 1 HETATM 18 C CAK 2Y1 . . . E 2 -15.721 30.34 -20.826 1 60.06 ? CAK 2Y1 301 B 1 HETATM 19 C CAA 2Y1 . . . E 2 -15.98 29.491 -22.086 1 64.6 ? CAA 2Y1 301 B 1 HETATM 20 C CBD 2Y1 . . . E 2 -12.728 30.952 -22.397 1 52.84 ? CBD 2Y1 301 B 1 HETATM 21 C CBE 2Y1 . . . E 2 -12.635 29.577 -23.049 1 56.42 ? CBE 2Y1 301 B 1 HETATM 22 C CAC 2Y1 . . . E 2 -13.02 29.685 -24.533 1 51.57 ? CAC 2Y1 301 B 1 HETATM 23 S SAT 2Y1 . . . E 2 -11.01 28.919 -22.852 1 52.96 ? SAT 2Y1 301 B 1 HETATM 24 C C2 2Y1 . . . E 2 -11.346 27.235 -22.661 1 48.94 ? C2 2Y1 301 B 1 HETATM 25 N N3 2Y1 . . . E 2 -10.274 26.471 -22.467 1 43.56 ? N3 2Y1 301 B 1 HETATM 26 N N1 2Y1 . . . E 2 -12.58 26.743 -22.691 1 43.68 ? N1 2Y1 301 B 1 HETATM 27 C C6 2Y1 . . . E 2 -12.747 25.433 -22.53 1 42.49 ? C6 2Y1 301 B 1 HETATM 28 N NAD 2Y1 . . . E 2 -13.979 24.872 -22.545 1 46.35 ? NAD 2Y1 301 B 1 HETATM 29 C C5 2Y1 . . . E 2 -11.654 24.595 -22.328 1 39.71 ? C5 2Y1 301 B 1 HETATM 30 C C4 2Y1 . . . E 2 -10.405 25.152 -22.313 1 41.75 ? C4 2Y1 301 B 1 HETATM 31 N NAE 2Y1 . . . E 2 -9.302 24.382 -22.148 1 40.82 ? NAE 2Y1 301 B 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #