data_4Q1F # _model_server_result.job_id QcKq89LLYR9NSpESioIqZw _model_server_result.datetime_utc '2024-10-13 02:22:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q1f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 4Q1F # _exptl.entry_id 4Q1F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.653 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{2-[5-(4-{(1R)-1-[(4,6-diaminopyrimidin-2-yl)sulfanyl]ethyl}-5-methyl-1,3-thiazol-2-yl)-2-methoxyphenoxy]ethyl}methanesulfonamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Q1F _cell.length_a 68.782 _cell.length_b 68.782 _cell.length_c 121.278 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q1F _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C20 H26 N6 O4 S3' _chem_comp.formula_weight 510.653 _chem_comp.id 2XN _chem_comp.mon_nstd_flag . _chem_comp.name N-{2-[5-(4-{(1R)-1-[(4,6-diaminopyrimidin-2-yl)sulfanyl]ethyl}-5-methyl-1,3-thiazol-2-yl)-2-methoxyphenoxy]ethyl}methanesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAD SBG 2XN sing 1 n n OAH SBG 2XN doub 2 n n SBG OAG 2XN doub 3 n n SBG NAR 2XN sing 4 n n NAR CAM 2XN sing 5 n n CAM CAN 2XN sing 6 n n CAN OAT 2XN sing 7 n n OAT CBC 2XN sing 8 n n CAC CBF 2XN sing 9 n n CAA OAS 2XN sing 10 n n CBC CAL 2XN doub 11 n y CBC CBB 2XN sing 12 n y CAL CAY 2XN sing 13 n y OAS CBB 2XN sing 14 n n CBB CAJ 2XN doub 15 n y NAQ CBE 2XN sing 16 n y NAQ CBD 2XN doub 17 n y CBF SAU 2XN sing 18 n n CBF CBE 2XN sing 19 n n SAU C2 2XN sing 20 n n CAY CBD 2XN sing 21 n n CAY CAI 2XN doub 22 n y C2 N3 2XN doub 23 n y C2 N1 2XN sing 24 n y N3 C4 2XN sing 25 n y N1 C6 2XN doub 26 n y CBE CAZ 2XN doub 27 n y C4 NAF 2XN sing 28 n n C4 C5 2XN doub 29 n y CBD SAV 2XN sing 30 n y C6 C5 2XN sing 31 n y C6 NAE 2XN sing 32 n n CAJ CAI 2XN sing 33 n y CAZ SAV 2XN sing 34 n y CAZ CAB 2XN sing 35 n n CAD H1 2XN sing 36 n n CAD H2 2XN sing 37 n n CAD H3 2XN sing 38 n n NAR H4 2XN sing 39 n n CAM H5 2XN sing 40 n n CAM H6 2XN sing 41 n n CAN H7 2XN sing 42 n n CAN H8 2XN sing 43 n n CAL H9 2XN sing 44 n n CAA H10 2XN sing 45 n n CAA H11 2XN sing 46 n n CAA H12 2XN sing 47 n n CAJ H13 2XN sing 48 n n CAI H14 2XN sing 49 n n CAB H15 2XN sing 50 n n CAB H16 2XN sing 51 n n CAB H17 2XN sing 52 n n CBF H18 2XN sing 53 n n CAC H19 2XN sing 54 n n CAC H20 2XN sing 55 n n CAC H21 2XN sing 56 n n NAE H22 2XN sing 57 n n NAE H23 2XN sing 58 n n C5 H24 2XN sing 59 n n NAF H25 2XN sing 60 n n NAF H26 2XN sing 61 n n # _atom_sites.entry_id 4Q1F _atom_sites.fract_transf_matrix[1][1] 0.014539 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008246 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UDP A 1 301 302 UDP UDP . D 3 2XN A 1 302 303 2XN 2XN . E 2 UDP B 1 301 302 UDP UDP . F 3 2XN B 1 302 303 2XN 2XN . G 4 HOH A 1 401 1 HOH HOH . G 4 HOH A 2 402 2 HOH HOH . G 4 HOH A 3 403 3 HOH HOH . G 4 HOH A 4 404 4 HOH HOH . G 4 HOH A 5 405 5 HOH HOH . G 4 HOH A 6 406 6 HOH HOH . G 4 HOH A 7 407 7 HOH HOH . G 4 HOH A 8 408 9 HOH HOH . G 4 HOH A 9 409 10 HOH HOH . G 4 HOH A 10 410 11 HOH HOH . G 4 HOH A 11 411 12 HOH HOH . G 4 HOH A 12 412 13 HOH HOH . G 4 HOH A 13 413 14 HOH HOH . G 4 HOH A 14 414 16 HOH HOH . G 4 HOH A 15 415 18 HOH HOH . G 4 HOH A 16 416 19 HOH HOH . G 4 HOH A 17 417 20 HOH HOH . G 4 HOH A 18 418 21 HOH HOH . G 4 HOH A 19 419 22 HOH HOH . G 4 HOH A 20 420 23 HOH HOH . G 4 HOH A 21 421 25 HOH HOH . G 4 HOH A 22 422 26 HOH HOH . G 4 HOH A 23 423 27 HOH HOH . G 4 HOH A 24 424 28 HOH HOH . G 4 HOH A 25 425 29 HOH HOH . G 4 HOH A 26 426 30 HOH HOH . G 4 HOH A 27 427 31 HOH HOH . G 4 HOH A 28 428 32 HOH HOH . G 4 HOH A 29 429 35 HOH HOH . G 4 HOH A 30 430 38 HOH HOH . G 4 HOH A 31 431 39 HOH HOH . G 4 HOH A 32 432 40 HOH HOH . G 4 HOH A 33 433 43 HOH HOH . G 4 HOH A 34 434 44 HOH HOH . G 4 HOH A 35 435 45 HOH HOH . G 4 HOH A 36 436 46 HOH HOH . G 4 HOH A 37 437 47 HOH HOH . G 4 HOH A 38 438 49 HOH HOH . G 4 HOH A 39 439 50 HOH HOH . G 4 HOH A 40 440 52 HOH HOH . G 4 HOH A 41 441 53 HOH HOH . G 4 HOH A 42 442 54 HOH HOH . G 4 HOH A 43 443 55 HOH HOH . G 4 HOH A 44 444 56 HOH HOH . G 4 HOH A 45 445 58 HOH HOH . G 4 HOH A 46 446 119 HOH HOH . G 4 HOH A 47 447 120 HOH HOH . G 4 HOH A 48 448 122 HOH HOH . G 4 HOH A 49 449 127 HOH HOH . G 4 HOH A 50 450 128 HOH HOH . G 4 HOH A 51 451 131 HOH HOH . G 4 HOH A 52 452 133 HOH HOH . G 4 HOH A 53 453 134 HOH HOH . G 4 HOH A 54 454 135 HOH HOH . G 4 HOH A 55 455 137 HOH HOH . G 4 HOH A 56 456 140 HOH HOH . G 4 HOH A 57 457 143 HOH HOH . G 4 HOH A 58 458 144 HOH HOH . G 4 HOH A 59 459 151 HOH HOH . G 4 HOH A 60 460 153 HOH HOH . G 4 HOH A 61 461 155 HOH HOH . G 4 HOH A 62 462 156 HOH HOH . G 4 HOH A 63 463 157 HOH HOH . G 4 HOH A 64 464 161 HOH HOH . G 4 HOH A 65 465 162 HOH HOH . G 4 HOH A 66 466 164 HOH HOH . G 4 HOH A 67 467 166 HOH HOH . G 4 HOH A 68 468 168 HOH HOH . G 4 HOH A 69 469 170 HOH HOH . G 4 HOH A 70 470 172 HOH HOH . G 4 HOH A 71 471 175 HOH HOH . G 4 HOH A 72 472 176 HOH HOH . G 4 HOH A 73 473 177 HOH HOH . G 4 HOH A 74 474 179 HOH HOH . G 4 HOH A 75 475 182 HOH HOH . G 4 HOH A 76 476 183 HOH HOH . G 4 HOH A 77 477 184 HOH HOH . G 4 HOH A 78 478 186 HOH HOH . G 4 HOH A 79 479 192 HOH HOH . G 4 HOH A 80 480 195 HOH HOH . G 4 HOH A 81 481 197 HOH HOH . G 4 HOH A 82 482 198 HOH HOH . H 4 HOH B 1 401 24 HOH HOH . H 4 HOH B 2 402 33 HOH HOH . H 4 HOH B 3 403 59 HOH HOH . H 4 HOH B 4 404 60 HOH HOH . H 4 HOH B 5 405 61 HOH HOH . H 4 HOH B 6 406 62 HOH HOH . H 4 HOH B 7 407 63 HOH HOH . H 4 HOH B 8 408 64 HOH HOH . H 4 HOH B 9 409 65 HOH HOH . H 4 HOH B 10 410 66 HOH HOH . H 4 HOH B 11 411 67 HOH HOH . H 4 HOH B 12 412 68 HOH HOH . H 4 HOH B 13 413 70 HOH HOH . H 4 HOH B 14 414 71 HOH HOH . H 4 HOH B 15 415 72 HOH HOH . H 4 HOH B 16 416 73 HOH HOH . H 4 HOH B 17 417 74 HOH HOH . H 4 HOH B 18 418 75 HOH HOH . H 4 HOH B 19 419 76 HOH HOH . H 4 HOH B 20 420 77 HOH HOH . H 4 HOH B 21 421 78 HOH HOH . H 4 HOH B 22 422 79 HOH HOH . H 4 HOH B 23 423 80 HOH HOH . H 4 HOH B 24 424 81 HOH HOH . H 4 HOH B 25 425 82 HOH HOH . H 4 HOH B 26 426 83 HOH HOH . H 4 HOH B 27 427 84 HOH HOH . H 4 HOH B 28 428 85 HOH HOH . H 4 HOH B 29 429 86 HOH HOH . H 4 HOH B 30 430 87 HOH HOH . H 4 HOH B 31 431 88 HOH HOH . H 4 HOH B 32 432 89 HOH HOH . H 4 HOH B 33 433 90 HOH HOH . H 4 HOH B 34 434 91 HOH HOH . H 4 HOH B 35 435 92 HOH HOH . H 4 HOH B 36 436 93 HOH HOH . H 4 HOH B 37 437 94 HOH HOH . H 4 HOH B 38 438 95 HOH HOH . H 4 HOH B 39 439 97 HOH HOH . H 4 HOH B 40 440 98 HOH HOH . H 4 HOH B 41 441 99 HOH HOH . H 4 HOH B 42 442 100 HOH HOH . H 4 HOH B 43 443 101 HOH HOH . H 4 HOH B 44 444 102 HOH HOH . H 4 HOH B 45 445 103 HOH HOH . H 4 HOH B 46 446 104 HOH HOH . H 4 HOH B 47 447 105 HOH HOH . H 4 HOH B 48 448 106 HOH HOH . H 4 HOH B 49 449 107 HOH HOH . H 4 HOH B 50 450 109 HOH HOH . H 4 HOH B 51 451 110 HOH HOH . H 4 HOH B 52 452 112 HOH HOH . H 4 HOH B 53 453 113 HOH HOH . H 4 HOH B 54 454 114 HOH HOH . H 4 HOH B 55 455 115 HOH HOH . H 4 HOH B 56 456 116 HOH HOH . H 4 HOH B 57 457 117 HOH HOH . H 4 HOH B 58 458 121 HOH HOH . H 4 HOH B 59 459 123 HOH HOH . H 4 HOH B 60 460 125 HOH HOH . H 4 HOH B 61 461 129 HOH HOH . H 4 HOH B 62 462 130 HOH HOH . H 4 HOH B 63 463 132 HOH HOH . H 4 HOH B 64 464 136 HOH HOH . H 4 HOH B 65 465 138 HOH HOH . H 4 HOH B 66 466 141 HOH HOH . H 4 HOH B 67 467 145 HOH HOH . H 4 HOH B 68 468 146 HOH HOH . H 4 HOH B 69 469 149 HOH HOH . H 4 HOH B 70 470 152 HOH HOH . H 4 HOH B 71 471 158 HOH HOH . H 4 HOH B 72 472 160 HOH HOH . H 4 HOH B 73 473 163 HOH HOH . H 4 HOH B 74 474 165 HOH HOH . H 4 HOH B 75 475 167 HOH HOH . H 4 HOH B 76 476 169 HOH HOH . H 4 HOH B 77 477 171 HOH HOH . H 4 HOH B 78 478 173 HOH HOH . H 4 HOH B 79 479 178 HOH HOH . H 4 HOH B 80 480 180 HOH HOH . H 4 HOH B 81 481 181 HOH HOH . H 4 HOH B 82 482 185 HOH HOH . H 4 HOH B 83 483 187 HOH HOH . H 4 HOH B 84 484 188 HOH HOH . H 4 HOH B 85 485 189 HOH HOH . H 4 HOH B 86 486 190 HOH HOH . H 4 HOH B 87 487 193 HOH HOH . H 4 HOH B 88 488 194 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAD 2XN . . . F 3 -12.014 -37.691 14.06 1 77.28 ? CAD 2XN 302 B 1 HETATM 2 S SBG 2XN . . . F 3 -10.766 -38.297 15.181 1 96.99 ? SBG 2XN 302 B 1 HETATM 3 O OAG 2XN . . . F 3 -11.039 -39.783 15.406 1 89.26 ? OAG 2XN 302 B 1 HETATM 4 O OAH 2XN . . . F 3 -10.871 -37.564 16.516 1 79.49 ? OAH 2XN 302 B 1 HETATM 5 N NAR 2XN . . . F 3 -9.112 -38.158 14.556 1 81.32 ? NAR 2XN 302 B 1 HETATM 6 C CAM 2XN . . . F 3 -8.445 -36.87 14.229 1 71.45 ? CAM 2XN 302 B 1 HETATM 7 C CAN 2XN . . . F 3 -9.235 -36.034 13.225 1 67.7 ? CAN 2XN 302 B 1 HETATM 8 O OAT 2XN . . . F 3 -9.461 -36.934 12.156 1 64.37 ? OAT 2XN 302 B 1 HETATM 9 C CBC 2XN . . . F 3 -10.158 -36.58 11.051 1 58.55 ? CBC 2XN 302 B 1 HETATM 10 C CAL 2XN . . . F 3 -10.623 -35.27 10.846 1 52.62 ? CAL 2XN 302 B 1 HETATM 11 C CBB 2XN . . . F 3 -10.328 -37.568 10.058 1 59.42 ? CBB 2XN 302 B 1 HETATM 12 O OAS 2XN . . . F 3 -9.902 -38.885 10.177 1 63.31 ? OAS 2XN 302 B 1 HETATM 13 C CAA 2XN . . . F 3 -9.22 -39.558 11.246 1 67.03 ? CAA 2XN 302 B 1 HETATM 14 C CAJ 2XN . . . F 3 -11.034 -37.258 8.911 1 57.77 ? CAJ 2XN 302 B 1 HETATM 15 C CAI 2XN . . . F 3 -11.509 -35.975 8.718 1 52.95 ? CAI 2XN 302 B 1 HETATM 16 C CAY 2XN . . . F 3 -11.329 -34.985 9.674 1 47.52 ? CAY 2XN 302 B 1 HETATM 17 C CBD 2XN . . . F 3 -11.83 -33.799 9.335 1 47.05 ? CBD 2XN 302 B 1 HETATM 18 N NAQ 2XN . . . F 3 -11.724 -32.602 9.938 1 50.41 ? NAQ 2XN 302 B 1 HETATM 19 S SAV 2XN . . . F 3 -12.665 -33.644 7.945 1 46.39 ? SAV 2XN 302 B 1 HETATM 20 C CAZ 2XN . . . F 3 -12.932 -32.101 8.099 1 42.4 ? CAZ 2XN 302 B 1 HETATM 21 C CAB 2XN . . . F 3 -13.715 -31.237 7.119 1 41.68 ? CAB 2XN 302 B 1 HETATM 22 C CBE 2XN . . . F 3 -12.375 -31.655 9.22 1 43.6 ? CBE 2XN 302 B 1 HETATM 23 C CBF 2XN . . . F 3 -12.503 -30.164 9.55 1 44.87 ? CBF 2XN 302 B 1 HETATM 24 C CAC 2XN . . . F 3 -12.962 -29.994 11 1 44.67 ? CAC 2XN 302 B 1 HETATM 25 S SAU 2XN . . . F 3 -10.914 -29.399 9.3 1 39.39 ? SAU 2XN 302 B 1 HETATM 26 C C2 2XN . . . F 3 -11.306 -27.681 9.26 1 37.47 ? C2 2XN 302 B 1 HETATM 27 N N3 2XN . . . F 3 -12.579 -27.262 9.34 1 39.32 ? N3 2XN 302 B 1 HETATM 28 N N1 2XN . . . F 3 -10.306 -26.798 9.111 1 42.35 ? N1 2XN 302 B 1 HETATM 29 C C6 2XN . . . F 3 -10.551 -25.481 9.067 1 39.88 ? C6 2XN 302 B 1 HETATM 30 N NAE 2XN . . . F 3 -9.548 -24.618 8.932 1 38.71 ? NAE 2XN 302 B 1 HETATM 31 C C5 2XN . . . F 3 -11.856 -25.022 9.159 1 37.78 ? C5 2XN 302 B 1 HETATM 32 C C4 2XN . . . F 3 -12.875 -25.955 9.299 1 37.08 ? C4 2XN 302 B 1 HETATM 33 N NAF 2XN . . . F 3 -14.139 -25.551 9.391 1 38.51 ? NAF 2XN 302 B 1 # _model_server_stats.io_time_ms 104 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #