data_4Q1J # _model_server_result.job_id XZdHtISsxfZ2IrsusQh-5g _model_server_result.datetime_utc '2024-10-19 16:42:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q1j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":303}' # _entry.id 4Q1J # _exptl.entry_id 4Q1J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Q1J _cell.length_a 80.52 _cell.length_b 85.62 _cell.length_c 125.79 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q1J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O LEU 108 C LEU 89 1_555 M NA NA . C NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? metalc ? metalc2 M NA NA . C NA 302 1_555 Q O HOH . C HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.917 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4Q1J _atom_sites.fract_transf_matrix[1][1] 0.012419 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01168 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00795 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 EDO A 1 301 1 EDO EDO . E 2 EDO A 1 302 1 EDO EDO . F 2 EDO A 1 303 1 EDO EDO . G 2 EDO A 1 304 1 EDO EDO . H 2 EDO A 1 305 1 EDO EDO . I 2 EDO A 1 306 1 EDO EDO . J 2 EDO B 1 301 1 EDO EDO . K 2 EDO B 1 302 1 EDO EDO . L 2 EDO C 1 301 1 EDO EDO . M 3 NA C 1 302 1 NA NA . N 2 EDO C 1 303 1 EDO EDO . O 4 HOH A 1 401 5 HOH HOH . O 4 HOH A 2 402 10 HOH HOH . O 4 HOH A 3 403 11 HOH HOH . O 4 HOH A 4 404 14 HOH HOH . O 4 HOH A 5 405 15 HOH HOH . O 4 HOH A 6 406 17 HOH HOH . O 4 HOH A 7 407 25 HOH HOH . O 4 HOH A 8 408 28 HOH HOH . O 4 HOH A 9 409 33 HOH HOH . O 4 HOH A 10 410 34 HOH HOH . O 4 HOH A 11 411 41 HOH HOH . O 4 HOH A 12 412 43 HOH HOH . O 4 HOH A 13 413 44 HOH HOH . O 4 HOH A 14 414 47 HOH HOH . O 4 HOH A 15 415 51 HOH HOH . O 4 HOH A 16 416 58 HOH HOH . O 4 HOH A 17 417 60 HOH HOH . O 4 HOH A 18 418 66 HOH HOH . O 4 HOH A 19 419 70 HOH HOH . O 4 HOH A 20 420 80 HOH HOH . O 4 HOH A 21 421 81 HOH HOH . O 4 HOH A 22 422 83 HOH HOH . O 4 HOH A 23 423 88 HOH HOH . O 4 HOH A 24 424 92 HOH HOH . O 4 HOH A 25 425 93 HOH HOH . O 4 HOH A 26 426 94 HOH HOH . O 4 HOH A 27 427 95 HOH HOH . O 4 HOH A 28 428 99 HOH HOH . O 4 HOH A 29 429 101 HOH HOH . O 4 HOH A 30 430 102 HOH HOH . O 4 HOH A 31 431 110 HOH HOH . O 4 HOH A 32 432 111 HOH HOH . O 4 HOH A 33 433 112 HOH HOH . O 4 HOH A 34 434 123 HOH HOH . O 4 HOH A 35 435 124 HOH HOH . O 4 HOH A 36 436 128 HOH HOH . O 4 HOH A 37 437 129 HOH HOH . O 4 HOH A 38 438 130 HOH HOH . O 4 HOH A 39 439 134 HOH HOH . O 4 HOH A 40 440 137 HOH HOH . O 4 HOH A 41 441 138 HOH HOH . O 4 HOH A 42 442 145 HOH HOH . O 4 HOH A 43 443 146 HOH HOH . O 4 HOH A 44 444 147 HOH HOH . O 4 HOH A 45 445 153 HOH HOH . O 4 HOH A 46 446 163 HOH HOH . O 4 HOH A 47 447 167 HOH HOH . O 4 HOH A 48 448 175 HOH HOH . O 4 HOH A 49 449 177 HOH HOH . O 4 HOH A 50 450 182 HOH HOH . O 4 HOH A 51 451 186 HOH HOH . O 4 HOH A 52 452 190 HOH HOH . O 4 HOH A 53 453 196 HOH HOH . O 4 HOH A 54 454 198 HOH HOH . O 4 HOH A 55 455 200 HOH HOH . O 4 HOH A 56 456 201 HOH HOH . O 4 HOH A 57 457 207 HOH HOH . O 4 HOH A 58 458 208 HOH HOH . O 4 HOH A 59 459 212 HOH HOH . O 4 HOH A 60 460 214 HOH HOH . O 4 HOH A 61 461 216 HOH HOH . O 4 HOH A 62 462 223 HOH HOH . O 4 HOH A 63 463 224 HOH HOH . O 4 HOH A 64 464 233 HOH HOH . O 4 HOH A 65 465 237 HOH HOH . O 4 HOH A 66 466 240 HOH HOH . O 4 HOH A 67 467 245 HOH HOH . O 4 HOH A 68 468 247 HOH HOH . O 4 HOH A 69 469 254 HOH HOH . O 4 HOH A 70 470 255 HOH HOH . O 4 HOH A 71 471 258 HOH HOH . O 4 HOH A 72 472 260 HOH HOH . O 4 HOH A 73 473 272 HOH HOH . O 4 HOH A 74 474 284 HOH HOH . O 4 HOH A 75 475 285 HOH HOH . O 4 HOH A 76 476 289 HOH HOH . O 4 HOH A 77 477 295 HOH HOH . O 4 HOH A 78 478 298 HOH HOH . O 4 HOH A 79 479 301 HOH HOH . O 4 HOH A 80 480 306 HOH HOH . O 4 HOH A 81 481 309 HOH HOH . O 4 HOH A 82 482 310 HOH HOH . O 4 HOH A 83 483 312 HOH HOH . P 4 HOH B 1 401 3 HOH HOH . P 4 HOH B 2 402 13 HOH HOH . P 4 HOH B 3 403 16 HOH HOH . P 4 HOH B 4 404 19 HOH HOH . P 4 HOH B 5 405 21 HOH HOH . P 4 HOH B 6 406 22 HOH HOH . P 4 HOH B 7 407 29 HOH HOH . P 4 HOH B 8 408 35 HOH HOH . P 4 HOH B 9 409 38 HOH HOH . P 4 HOH B 10 410 42 HOH HOH . P 4 HOH B 11 411 46 HOH HOH . P 4 HOH B 12 412 48 HOH HOH . P 4 HOH B 13 413 49 HOH HOH . P 4 HOH B 14 414 55 HOH HOH . P 4 HOH B 15 415 57 HOH HOH . P 4 HOH B 16 416 62 HOH HOH . P 4 HOH B 17 417 63 HOH HOH . P 4 HOH B 18 418 65 HOH HOH . P 4 HOH B 19 419 67 HOH HOH . P 4 HOH B 20 420 71 HOH HOH . P 4 HOH B 21 421 72 HOH HOH . P 4 HOH B 22 422 73 HOH HOH . P 4 HOH B 23 423 78 HOH HOH . P 4 HOH B 24 424 84 HOH HOH . P 4 HOH B 25 425 90 HOH HOH . P 4 HOH B 26 426 96 HOH HOH . P 4 HOH B 27 427 98 HOH HOH . P 4 HOH B 28 428 103 HOH HOH . P 4 HOH B 29 429 116 HOH HOH . P 4 HOH B 30 430 119 HOH HOH . P 4 HOH B 31 431 132 HOH HOH . P 4 HOH B 32 432 150 HOH HOH . P 4 HOH B 33 433 152 HOH HOH . P 4 HOH B 34 434 154 HOH HOH . P 4 HOH B 35 435 159 HOH HOH . P 4 HOH B 36 436 164 HOH HOH . P 4 HOH B 37 437 165 HOH HOH . P 4 HOH B 38 438 166 HOH HOH . P 4 HOH B 39 439 168 HOH HOH . P 4 HOH B 40 440 169 HOH HOH . P 4 HOH B 41 441 172 HOH HOH . P 4 HOH B 42 442 178 HOH HOH . P 4 HOH B 43 443 179 HOH HOH . P 4 HOH B 44 444 180 HOH HOH . P 4 HOH B 45 445 181 HOH HOH . P 4 HOH B 46 446 184 HOH HOH . P 4 HOH B 47 447 185 HOH HOH . P 4 HOH B 48 448 189 HOH HOH . P 4 HOH B 49 449 191 HOH HOH . P 4 HOH B 50 450 192 HOH HOH . P 4 HOH B 51 451 193 HOH HOH . P 4 HOH B 52 452 195 HOH HOH . P 4 HOH B 53 453 203 HOH HOH . P 4 HOH B 54 454 209 HOH HOH . P 4 HOH B 55 455 211 HOH HOH . P 4 HOH B 56 456 213 HOH HOH . P 4 HOH B 57 457 234 HOH HOH . P 4 HOH B 58 458 241 HOH HOH . P 4 HOH B 59 459 242 HOH HOH . P 4 HOH B 60 460 244 HOH HOH . P 4 HOH B 61 461 246 HOH HOH . P 4 HOH B 62 462 250 HOH HOH . P 4 HOH B 63 463 259 HOH HOH . P 4 HOH B 64 464 261 HOH HOH . P 4 HOH B 65 465 263 HOH HOH . P 4 HOH B 66 466 268 HOH HOH . P 4 HOH B 67 467 275 HOH HOH . P 4 HOH B 68 468 278 HOH HOH . P 4 HOH B 69 469 297 HOH HOH . P 4 HOH B 70 470 300 HOH HOH . P 4 HOH B 71 471 305 HOH HOH . P 4 HOH B 72 472 311 HOH HOH . P 4 HOH B 73 473 313 HOH HOH . Q 4 HOH C 1 401 2 HOH HOH . Q 4 HOH C 2 402 4 HOH HOH . Q 4 HOH C 3 403 6 HOH HOH . Q 4 HOH C 4 404 7 HOH HOH . Q 4 HOH C 5 405 9 HOH HOH . Q 4 HOH C 6 406 12 HOH HOH . Q 4 HOH C 7 407 18 HOH HOH . Q 4 HOH C 8 408 24 HOH HOH . Q 4 HOH C 9 409 26 HOH HOH . Q 4 HOH C 10 410 30 HOH HOH . Q 4 HOH C 11 411 31 HOH HOH . Q 4 HOH C 12 412 32 HOH HOH . Q 4 HOH C 13 413 36 HOH HOH . Q 4 HOH C 14 414 37 HOH HOH . Q 4 HOH C 15 415 39 HOH HOH . Q 4 HOH C 16 416 40 HOH HOH . Q 4 HOH C 17 417 50 HOH HOH . Q 4 HOH C 18 418 52 HOH HOH . Q 4 HOH C 19 419 56 HOH HOH . Q 4 HOH C 20 420 61 HOH HOH . Q 4 HOH C 21 421 64 HOH HOH . Q 4 HOH C 22 422 68 HOH HOH . Q 4 HOH C 23 423 69 HOH HOH . Q 4 HOH C 24 424 75 HOH HOH . Q 4 HOH C 25 425 82 HOH HOH . Q 4 HOH C 26 426 85 HOH HOH . Q 4 HOH C 27 427 87 HOH HOH . Q 4 HOH C 28 428 89 HOH HOH . Q 4 HOH C 29 429 97 HOH HOH . Q 4 HOH C 30 430 100 HOH HOH . Q 4 HOH C 31 431 104 HOH HOH . Q 4 HOH C 32 432 105 HOH HOH . Q 4 HOH C 33 433 106 HOH HOH . Q 4 HOH C 34 434 107 HOH HOH . Q 4 HOH C 35 435 108 HOH HOH . Q 4 HOH C 36 436 109 HOH HOH . Q 4 HOH C 37 437 114 HOH HOH . Q 4 HOH C 38 438 115 HOH HOH . Q 4 HOH C 39 439 117 HOH HOH . Q 4 HOH C 40 440 118 HOH HOH . Q 4 HOH C 41 441 125 HOH HOH . Q 4 HOH C 42 442 126 HOH HOH . Q 4 HOH C 43 443 127 HOH HOH . Q 4 HOH C 44 444 131 HOH HOH . Q 4 HOH C 45 445 135 HOH HOH . Q 4 HOH C 46 446 136 HOH HOH . Q 4 HOH C 47 447 139 HOH HOH . Q 4 HOH C 48 448 140 HOH HOH . Q 4 HOH C 49 449 142 HOH HOH . Q 4 HOH C 50 450 143 HOH HOH . Q 4 HOH C 51 451 144 HOH HOH . Q 4 HOH C 52 452 148 HOH HOH . Q 4 HOH C 53 453 149 HOH HOH . Q 4 HOH C 54 454 151 HOH HOH . Q 4 HOH C 55 455 157 HOH HOH . Q 4 HOH C 56 456 160 HOH HOH . Q 4 HOH C 57 457 161 HOH HOH . Q 4 HOH C 58 458 162 HOH HOH . Q 4 HOH C 59 459 171 HOH HOH . Q 4 HOH C 60 460 173 HOH HOH . Q 4 HOH C 61 461 174 HOH HOH . Q 4 HOH C 62 462 187 HOH HOH . Q 4 HOH C 63 463 197 HOH HOH . Q 4 HOH C 64 464 205 HOH HOH . Q 4 HOH C 65 465 210 HOH HOH . Q 4 HOH C 66 466 215 HOH HOH . Q 4 HOH C 67 467 217 HOH HOH . Q 4 HOH C 68 468 219 HOH HOH . Q 4 HOH C 69 469 220 HOH HOH . Q 4 HOH C 70 470 221 HOH HOH . Q 4 HOH C 71 471 222 HOH HOH . Q 4 HOH C 72 472 225 HOH HOH . Q 4 HOH C 73 473 227 HOH HOH . Q 4 HOH C 74 474 230 HOH HOH . Q 4 HOH C 75 475 232 HOH HOH . Q 4 HOH C 76 476 235 HOH HOH . Q 4 HOH C 77 477 236 HOH HOH . Q 4 HOH C 78 478 238 HOH HOH . Q 4 HOH C 79 479 239 HOH HOH . Q 4 HOH C 80 480 243 HOH HOH . Q 4 HOH C 81 481 249 HOH HOH . Q 4 HOH C 82 482 251 HOH HOH . Q 4 HOH C 83 483 253 HOH HOH . Q 4 HOH C 84 484 256 HOH HOH . Q 4 HOH C 85 485 257 HOH HOH . Q 4 HOH C 86 486 262 HOH HOH . Q 4 HOH C 87 487 266 HOH HOH . Q 4 HOH C 88 488 267 HOH HOH . Q 4 HOH C 89 489 270 HOH HOH . Q 4 HOH C 90 490 271 HOH HOH . Q 4 HOH C 91 491 273 HOH HOH . Q 4 HOH C 92 492 274 HOH HOH . Q 4 HOH C 93 493 277 HOH HOH . Q 4 HOH C 94 494 279 HOH HOH . Q 4 HOH C 95 495 283 HOH HOH . Q 4 HOH C 96 496 287 HOH HOH . Q 4 HOH C 97 497 288 HOH HOH . Q 4 HOH C 98 498 292 HOH HOH . Q 4 HOH C 99 499 299 HOH HOH . Q 4 HOH C 100 500 302 HOH HOH . Q 4 HOH C 101 501 303 HOH HOH . Q 4 HOH C 102 502 304 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 2 24.789 37.524 10.258 1 56.85 ? C1 EDO 303 A 1 HETATM 2 O O1 EDO . . . F 2 23.905 38.25 11.139 1 48.25 ? O1 EDO 303 A 1 HETATM 3 C C2 EDO . . . F 2 25.808 36.67 11.03 1 53.57 ? C2 EDO 303 A 1 HETATM 4 O O2 EDO . . . F 2 25.07 35.791 11.889 1 59.77 ? O2 EDO 303 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #