data_4Q1X # _model_server_result.job_id ImIKqtxFYZpkhKx8JBs30Q _model_server_result.datetime_utc '2024-11-30 00:02:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q1x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":102}' # _entry.id 4Q1X # _exptl.entry_id 4Q1X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Q1X _cell.length_a 50.906 _cell.length_b 58.277 _cell.length_c 61.775 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q1X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 207 n n C1 C2 GOL sing 208 n n C1 H11 GOL sing 209 n n C1 H12 GOL sing 210 n n O1 HO1 GOL sing 211 n n C2 O2 GOL sing 212 n n C2 C3 GOL sing 213 n n C2 H2 GOL sing 214 n n O2 HO2 GOL sing 215 n n C3 O3 GOL sing 216 n n C3 H31 GOL sing 217 n n C3 H32 GOL sing 218 n n O3 HO3 GOL sing 219 n n # _atom_sites.entry_id 4Q1X _atom_sites.fract_transf_matrix[1][1] 0.019644 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017159 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016188 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 017 A 1 101 200 017 017 . D 3 GOL A 1 102 2 GOL GOL . E 4 PO4 B 1 101 1 PO4 PO4 . F 5 HOH A 1 201 1 HOH HOH . F 5 HOH A 2 202 2 HOH HOH . F 5 HOH A 3 203 4 HOH HOH . F 5 HOH A 4 204 5 HOH HOH . F 5 HOH A 5 205 6 HOH HOH . F 5 HOH A 6 206 8 HOH HOH . F 5 HOH A 7 207 12 HOH HOH . F 5 HOH A 8 208 14 HOH HOH . F 5 HOH A 9 209 16 HOH HOH . F 5 HOH A 10 210 18 HOH HOH . F 5 HOH A 11 211 19 HOH HOH . F 5 HOH A 12 212 20 HOH HOH . F 5 HOH A 13 213 23 HOH HOH . F 5 HOH A 14 214 24 HOH HOH . F 5 HOH A 15 215 25 HOH HOH . F 5 HOH A 16 216 26 HOH HOH . F 5 HOH A 17 217 29 HOH HOH . F 5 HOH A 18 218 30 HOH HOH . F 5 HOH A 19 219 31 HOH HOH . F 5 HOH A 20 220 33 HOH HOH . F 5 HOH A 21 221 38 HOH HOH . F 5 HOH A 22 222 40 HOH HOH . F 5 HOH A 23 223 41 HOH HOH . F 5 HOH A 24 224 50 HOH HOH . F 5 HOH A 25 225 58 HOH HOH . F 5 HOH A 26 226 59 HOH HOH . F 5 HOH A 27 227 60 HOH HOH . F 5 HOH A 28 228 61 HOH HOH . F 5 HOH A 29 229 63 HOH HOH . F 5 HOH A 30 230 66 HOH HOH . F 5 HOH A 31 231 69 HOH HOH . F 5 HOH A 32 232 70 HOH HOH . F 5 HOH A 33 233 77 HOH HOH . F 5 HOH A 34 234 78 HOH HOH . F 5 HOH A 35 235 81 HOH HOH . F 5 HOH A 36 236 84 HOH HOH . F 5 HOH A 37 237 85 HOH HOH . F 5 HOH A 38 238 86 HOH HOH . F 5 HOH A 39 239 87 HOH HOH . F 5 HOH A 40 240 88 HOH HOH . F 5 HOH A 41 241 89 HOH HOH . F 5 HOH A 42 242 90 HOH HOH . F 5 HOH A 43 243 91 HOH HOH . F 5 HOH A 44 244 92 HOH HOH . F 5 HOH A 45 245 93 HOH HOH . F 5 HOH A 46 246 64 HOH HOH . F 5 HOH A 47 247 65 HOH HOH . F 5 HOH A 48 248 73 HOH HOH . F 5 HOH A 49 249 76 HOH HOH . G 5 HOH B 1 201 3 HOH HOH . G 5 HOH B 2 202 7 HOH HOH . G 5 HOH B 3 203 9 HOH HOH . G 5 HOH B 4 204 10 HOH HOH . G 5 HOH B 5 205 11 HOH HOH . G 5 HOH B 6 206 13 HOH HOH . G 5 HOH B 7 207 15 HOH HOH . G 5 HOH B 8 208 17 HOH HOH . G 5 HOH B 9 209 21 HOH HOH . G 5 HOH B 10 210 22 HOH HOH . G 5 HOH B 11 211 27 HOH HOH . G 5 HOH B 12 212 28 HOH HOH . G 5 HOH B 13 213 32 HOH HOH . G 5 HOH B 14 214 34 HOH HOH . G 5 HOH B 15 215 35 HOH HOH . G 5 HOH B 16 216 36 HOH HOH . G 5 HOH B 17 217 37 HOH HOH . G 5 HOH B 18 218 39 HOH HOH . G 5 HOH B 19 219 42 HOH HOH . G 5 HOH B 20 220 43 HOH HOH . G 5 HOH B 21 221 44 HOH HOH . G 5 HOH B 22 222 45 HOH HOH . G 5 HOH B 23 223 46 HOH HOH . G 5 HOH B 24 224 47 HOH HOH . G 5 HOH B 25 225 48 HOH HOH . G 5 HOH B 26 226 49 HOH HOH . G 5 HOH B 27 227 51 HOH HOH . G 5 HOH B 28 228 52 HOH HOH . G 5 HOH B 29 229 53 HOH HOH . G 5 HOH B 30 230 54 HOH HOH . G 5 HOH B 31 231 55 HOH HOH . G 5 HOH B 32 232 56 HOH HOH . G 5 HOH B 33 233 57 HOH HOH . G 5 HOH B 34 234 62 HOH HOH . G 5 HOH B 35 235 67 HOH HOH . G 5 HOH B 36 236 68 HOH HOH . G 5 HOH B 37 237 71 HOH HOH . G 5 HOH B 38 238 72 HOH HOH . G 5 HOH B 39 239 74 HOH HOH . G 5 HOH B 40 240 75 HOH HOH . G 5 HOH B 41 241 79 HOH HOH . G 5 HOH B 42 242 80 HOH HOH . G 5 HOH B 43 243 82 HOH HOH . G 5 HOH B 44 244 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 19.423 15.952 11.826 1 52.56 ? C1 GOL 102 A 1 HETATM 2 O O1 GOL . . . D 3 18.224 15.365 11.363 1 53.07 ? O1 GOL 102 A 1 HETATM 3 C C2 GOL . . . D 3 20.483 16.105 10.736 1 53.24 ? C2 GOL 102 A 1 HETATM 4 O O2 GOL . . . D 3 21.29 14.95 10.717 1 53.81 ? O2 GOL 102 A 1 HETATM 5 C C3 GOL . . . D 3 21.408 17.288 11.007 1 53.35 ? C3 GOL 102 A 1 HETATM 6 O O3 GOL . . . D 3 21.524 18.196 9.932 1 52.61 ? O3 GOL 102 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #