data_4Q23 # _model_server_result.job_id mwsrBzwNGpWSBCqwgxL2uA _model_server_result.datetime_utc '2024-10-19 19:23:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q23 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 4Q23 # _exptl.entry_id 4Q23 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 283.112 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Q23 _cell.length_a 111.36 _cell.length_b 111.36 _cell.length_c 67.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q23 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -33.8 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 125 A ASP 103 1_555 C MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc2 A OD1 ASP 125 A ASP 103 1_555 E MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc3 A OD2 ASP 129 A ASP 107 1_555 C MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc4 A OD2 ASP 129 A ASP 107 1_555 E MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc5 A OD2 ASP 265 A ASP 243 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc6 B O15 RIS . A RIS 901 1_555 C MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc7 B O12 RIS . A RIS 901 1_555 C MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc8 B O11 RIS . A RIS 901 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc9 B O16 RIS . A RIS 901 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc10 B O15 RIS . A RIS 901 1_555 E MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc11 C MG MG . A MG 902 1_555 G O HOH . A HOH 1090 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc12 C MG MG . A MG 902 1_555 G O HOH . A HOH 1092 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc13 D MG MG . A MG 903 1_555 G O HOH . A HOH 1088 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc14 D MG MG . A MG 903 1_555 G O HOH . A HOH 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc15 D MG MG . A MG 903 1_555 G O HOH . A HOH 1093 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc16 E MG MG . A MG 904 1_555 G O HOH . A HOH 1094 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc17 E MG MG . A MG 904 1_555 G O HOH . A HOH 1095 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc18 E MG MG . A MG 904 1_555 G O HOH . A HOH 1096 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? # _chem_comp.formula 'C7 H11 N O7 P2' _chem_comp.formula_weight 283.112 _chem_comp.id RIS _chem_comp.mon_nstd_flag . _chem_comp.name '1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Risedronate # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P9 RIS sing 277 n n O12 H12 RIS sing 278 n n P9 O11 RIS doub 279 n n P9 O10 RIS sing 280 n n P9 C8 RIS sing 281 n n C8 O13 RIS sing 282 n n C8 P14 RIS sing 283 n n C8 C7 RIS sing 284 n n O13 H13 RIS sing 285 n n P14 O16 RIS sing 286 n n P14 O15 RIS sing 287 n n P14 O17 RIS doub 288 n n O16 H16 RIS sing 289 n n O15 H15 RIS sing 290 n n C7 C2 RIS sing 291 n n C7 HC71 RIS sing 292 n n C7 HC72 RIS sing 293 n n C2 C1 RIS doub 294 n y C2 C3 RIS sing 295 n y C1 C6 RIS sing 296 n y C1 HC1 RIS sing 297 n n C6 C5 RIS doub 298 n y C6 HC6 RIS sing 299 n n C5 N4 RIS sing 300 n y C5 HC5 RIS sing 301 n n N4 C3 RIS doub 302 n y C3 HC3 RIS sing 303 n n HO1 O10 RIS sing 304 n n # _atom_sites.entry_id 4Q23 _atom_sites.fract_transf_matrix[1][1] 0.00898 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00898 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RIS A 1 901 901 RIS RIS . C 3 MG A 1 902 907 MG MG . D 3 MG A 1 903 908 MG MG . E 3 MG A 1 904 909 MG MG . F 4 SO4 A 1 905 1 SO4 SO4 . G 5 HOH A 1 1001 4 HOH HOH . G 5 HOH A 2 1002 6 HOH HOH . G 5 HOH A 3 1003 11 HOH HOH . G 5 HOH A 4 1004 12 HOH HOH . G 5 HOH A 5 1005 13 HOH HOH . G 5 HOH A 6 1006 14 HOH HOH . G 5 HOH A 7 1007 15 HOH HOH . G 5 HOH A 8 1008 16 HOH HOH . G 5 HOH A 9 1009 17 HOH HOH . G 5 HOH A 10 1010 18 HOH HOH . G 5 HOH A 11 1011 19 HOH HOH . G 5 HOH A 12 1012 21 HOH HOH . G 5 HOH A 13 1013 22 HOH HOH . G 5 HOH A 14 1014 23 HOH HOH . G 5 HOH A 15 1015 24 HOH HOH . G 5 HOH A 16 1016 25 HOH HOH . G 5 HOH A 17 1017 26 HOH HOH . G 5 HOH A 18 1018 27 HOH HOH . G 5 HOH A 19 1019 28 HOH HOH . G 5 HOH A 20 1020 30 HOH HOH . G 5 HOH A 21 1021 32 HOH HOH . G 5 HOH A 22 1022 33 HOH HOH . G 5 HOH A 23 1023 34 HOH HOH . G 5 HOH A 24 1024 35 HOH HOH . G 5 HOH A 25 1025 36 HOH HOH . G 5 HOH A 26 1026 37 HOH HOH . G 5 HOH A 27 1027 38 HOH HOH . G 5 HOH A 28 1028 39 HOH HOH . G 5 HOH A 29 1029 40 HOH HOH . G 5 HOH A 30 1030 41 HOH HOH . G 5 HOH A 31 1031 43 HOH HOH . G 5 HOH A 32 1032 44 HOH HOH . G 5 HOH A 33 1033 45 HOH HOH . G 5 HOH A 34 1034 46 HOH HOH . G 5 HOH A 35 1035 47 HOH HOH . G 5 HOH A 36 1036 48 HOH HOH . G 5 HOH A 37 1037 50 HOH HOH . G 5 HOH A 38 1038 51 HOH HOH . G 5 HOH A 39 1039 52 HOH HOH . G 5 HOH A 40 1040 53 HOH HOH . G 5 HOH A 41 1041 54 HOH HOH . G 5 HOH A 42 1042 55 HOH HOH . G 5 HOH A 43 1043 56 HOH HOH . G 5 HOH A 44 1044 57 HOH HOH . G 5 HOH A 45 1045 58 HOH HOH . G 5 HOH A 46 1046 59 HOH HOH . G 5 HOH A 47 1047 61 HOH HOH . G 5 HOH A 48 1048 62 HOH HOH . G 5 HOH A 49 1049 63 HOH HOH . G 5 HOH A 50 1050 64 HOH HOH . G 5 HOH A 51 1051 65 HOH HOH . G 5 HOH A 52 1052 67 HOH HOH . G 5 HOH A 53 1053 68 HOH HOH . G 5 HOH A 54 1054 69 HOH HOH . G 5 HOH A 55 1055 71 HOH HOH . G 5 HOH A 56 1056 72 HOH HOH . G 5 HOH A 57 1057 74 HOH HOH . G 5 HOH A 58 1058 75 HOH HOH . G 5 HOH A 59 1059 76 HOH HOH . G 5 HOH A 60 1060 77 HOH HOH . G 5 HOH A 61 1061 79 HOH HOH . G 5 HOH A 62 1062 80 HOH HOH . G 5 HOH A 63 1063 81 HOH HOH . G 5 HOH A 64 1064 82 HOH HOH . G 5 HOH A 65 1065 84 HOH HOH . G 5 HOH A 66 1066 86 HOH HOH . G 5 HOH A 67 1067 88 HOH HOH . G 5 HOH A 68 1068 91 HOH HOH . G 5 HOH A 69 1069 92 HOH HOH . G 5 HOH A 70 1070 93 HOH HOH . G 5 HOH A 71 1071 94 HOH HOH . G 5 HOH A 72 1072 95 HOH HOH . G 5 HOH A 73 1073 98 HOH HOH . G 5 HOH A 74 1074 100 HOH HOH . G 5 HOH A 75 1075 101 HOH HOH . G 5 HOH A 76 1076 102 HOH HOH . G 5 HOH A 77 1077 104 HOH HOH . G 5 HOH A 78 1078 107 HOH HOH . G 5 HOH A 79 1079 110 HOH HOH . G 5 HOH A 80 1080 111 HOH HOH . G 5 HOH A 81 1081 113 HOH HOH . G 5 HOH A 82 1082 114 HOH HOH . G 5 HOH A 83 1083 116 HOH HOH . G 5 HOH A 84 1084 121 HOH HOH . G 5 HOH A 85 1085 122 HOH HOH . G 5 HOH A 86 1086 123 HOH HOH . G 5 HOH A 87 1087 124 HOH HOH . G 5 HOH A 88 1088 125 HOH HOH . G 5 HOH A 89 1089 126 HOH HOH . G 5 HOH A 90 1090 127 HOH HOH . G 5 HOH A 91 1091 128 HOH HOH . G 5 HOH A 92 1092 129 HOH HOH . G 5 HOH A 93 1093 130 HOH HOH . G 5 HOH A 94 1094 131 HOH HOH . G 5 HOH A 95 1095 132 HOH HOH . G 5 HOH A 96 1096 133 HOH HOH . G 5 HOH A 97 1097 134 HOH HOH . G 5 HOH A 98 1098 135 HOH HOH . G 5 HOH A 99 1099 136 HOH HOH . G 5 HOH A 100 1100 137 HOH HOH . G 5 HOH A 101 1101 138 HOH HOH . G 5 HOH A 102 1102 139 HOH HOH . G 5 HOH A 103 1103 140 HOH HOH . G 5 HOH A 104 1104 141 HOH HOH . G 5 HOH A 105 1105 142 HOH HOH . G 5 HOH A 106 1106 143 HOH HOH . G 5 HOH A 107 1107 144 HOH HOH . G 5 HOH A 108 1108 145 HOH HOH . G 5 HOH A 109 1109 146 HOH HOH . G 5 HOH A 110 1110 148 HOH HOH . G 5 HOH A 111 1111 150 HOH HOH . G 5 HOH A 112 1112 151 HOH HOH . G 5 HOH A 113 1113 152 HOH HOH . G 5 HOH A 114 1114 153 HOH HOH . G 5 HOH A 115 1115 154 HOH HOH . G 5 HOH A 116 1116 155 HOH HOH . G 5 HOH A 117 1117 156 HOH HOH . G 5 HOH A 118 1118 157 HOH HOH . G 5 HOH A 119 1119 158 HOH HOH . G 5 HOH A 120 1120 159 HOH HOH . G 5 HOH A 121 1121 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 RIS . . . B 2 -17.119 35.983 -9.922 1 28.34 ? O12 RIS 901 A 1 HETATM 2 P P9 RIS . . . B 2 -15.932 36.009 -9.012 1 32.94 ? P9 RIS 901 A 1 HETATM 3 O O11 RIS . . . B 2 -15.763 37.15 -8.355 1 30.44 ? O11 RIS 901 A 1 HETATM 4 O O10 RIS . . . B 2 -15.09 36.017 -10.337 1 22.43 ? O10 RIS 901 A 1 HETATM 5 C C8 RIS . . . B 2 -15.657 34.293 -8.32 1 35.09 ? C8 RIS 901 A 1 HETATM 6 O O13 RIS . . . B 2 -14.348 34.39 -7.536 1 35.02 ? O13 RIS 901 A 1 HETATM 7 P P14 RIS . . . B 2 -16.931 34.157 -7.034 1 34.25 ? P14 RIS 901 A 1 HETATM 8 O O16 RIS . . . B 2 -16.826 35.488 -6.25 1 33.7 ? O16 RIS 901 A 1 HETATM 9 O O15 RIS . . . B 2 -18.341 34.062 -7.771 1 33.65 ? O15 RIS 901 A 1 HETATM 10 O O17 RIS . . . B 2 -16.826 33.103 -6.096 1 31.79 ? O17 RIS 901 A 1 HETATM 11 C C7 RIS . . . B 2 -15.63 33.325 -9.444 1 38.28 ? C7 RIS 901 A 1 HETATM 12 C C2 RIS . . . B 2 -15.423 31.893 -8.876 1 42.39 ? C2 RIS 901 A 1 HETATM 13 C C1 RIS . . . B 2 -16.109 30.937 -9.71 1 42.91 ? C1 RIS 901 A 1 HETATM 14 C C6 RIS . . . B 2 -16.038 29.563 -9.356 1 43.54 ? C6 RIS 901 A 1 HETATM 15 C C5 RIS . . . B 2 -15.329 29.093 -8.244 1 44.33 ? C5 RIS 901 A 1 HETATM 16 N N4 RIS . . . B 2 -14.671 29.944 -7.393 1 45.95 ? N4 RIS 901 A 1 HETATM 17 C C3 RIS . . . B 2 -14.644 31.409 -7.609 1 44.27 ? C3 RIS 901 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 17 #