data_4Q29 # _model_server_result.job_id UUG0TMjO7EFRwvHaRp6VUg _model_server_result.datetime_utc '2024-12-28 22:55:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q29 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 4Q29 # _exptl.entry_id 4Q29 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Q29 _cell.length_a 55.738 _cell.length_b 147.687 _cell.length_c 83.843 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q29 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 2 A MSE 2 1_555 A N ASN 3 A ASN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C LYS 7 A LYS 7 1_555 A N MSE 8 A MSE 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale3 A C MSE 8 A MSE 8 1_555 A N ASP 9 A ASP 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 A C SER 12 A SER 12 1_555 A N MSE 13 A MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale5 A C MSE 13 A MSE 13 1_555 A N VAL 14 A VAL 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 B C MSE 2 B MSE 2 1_555 B N ASN 3 B ASN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 B C LYS 7 B LYS 7 1_555 B N MSE 8 B MSE 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 B C MSE 8 B MSE 8 1_555 B N ASP 9 B ASP 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale9 B C SER 12 B SER 12 1_555 B N MSE 13 B MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? covale ? covale10 B C MSE 13 B MSE 13 1_555 B N VAL 14 B VAL 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A NE2 HIS 50 A HIS 50 1_555 C NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc2 A NE2 HIS 52 A HIS 52 1_555 C NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc3 A OE2 GLU 56 A GLU 56 1_555 C NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc4 A NE2 HIS 90 A HIS 90 1_555 C NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc5 C NI NI . A NI 201 1_555 F O HOH . A HOH 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc6 D NA NA . A NA 202 1_555 F O HOH . A HOH 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc7 B NE2 HIS 52 B HIS 52 1_555 E NI NI . B NI 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc8 B OE2 GLU 56 B GLU 56 1_555 E NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc9 B NE2 HIS 90 B HIS 90 1_555 E NI NI . B NI 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.167 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4Q29 _atom_sites.fract_transf_matrix[1][1] 0.017941 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011927 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI A 1 201 201 NI NI . D 3 NA A 1 202 202 NA NA . E 2 NI B 1 201 201 NI NI . F 4 HOH A 1 301 1 HOH HOH . F 4 HOH A 2 302 3 HOH HOH . F 4 HOH A 3 303 6 HOH HOH . F 4 HOH A 4 304 8 HOH HOH . F 4 HOH A 5 305 9 HOH HOH . F 4 HOH A 6 306 15 HOH HOH . F 4 HOH A 7 307 19 HOH HOH . F 4 HOH A 8 308 20 HOH HOH . F 4 HOH A 9 309 22 HOH HOH . F 4 HOH A 10 310 23 HOH HOH . F 4 HOH A 11 311 24 HOH HOH . F 4 HOH A 12 312 26 HOH HOH . F 4 HOH A 13 313 28 HOH HOH . F 4 HOH A 14 314 29 HOH HOH . F 4 HOH A 15 315 31 HOH HOH . F 4 HOH A 16 316 32 HOH HOH . F 4 HOH A 17 317 33 HOH HOH . F 4 HOH A 18 318 35 HOH HOH . F 4 HOH A 19 319 36 HOH HOH . F 4 HOH A 20 320 37 HOH HOH . F 4 HOH A 21 321 38 HOH HOH . F 4 HOH A 22 322 39 HOH HOH . F 4 HOH A 23 323 41 HOH HOH . F 4 HOH A 24 324 42 HOH HOH . F 4 HOH A 25 325 45 HOH HOH . F 4 HOH A 26 326 46 HOH HOH . F 4 HOH A 27 327 48 HOH HOH . F 4 HOH A 28 328 49 HOH HOH . F 4 HOH A 29 329 52 HOH HOH . F 4 HOH A 30 330 53 HOH HOH . F 4 HOH A 31 331 56 HOH HOH . F 4 HOH A 32 332 62 HOH HOH . F 4 HOH A 33 333 63 HOH HOH . F 4 HOH A 34 334 65 HOH HOH . F 4 HOH A 35 335 67 HOH HOH . F 4 HOH A 36 336 70 HOH HOH . F 4 HOH A 37 337 72 HOH HOH . F 4 HOH A 38 338 75 HOH HOH . F 4 HOH A 39 339 79 HOH HOH . F 4 HOH A 40 340 80 HOH HOH . F 4 HOH A 41 341 81 HOH HOH . F 4 HOH A 42 342 82 HOH HOH . F 4 HOH A 43 343 84 HOH HOH . F 4 HOH A 44 344 85 HOH HOH . F 4 HOH A 45 345 86 HOH HOH . F 4 HOH A 46 346 87 HOH HOH . F 4 HOH A 47 347 89 HOH HOH . F 4 HOH A 48 348 90 HOH HOH . F 4 HOH A 49 349 92 HOH HOH . F 4 HOH A 50 350 95 HOH HOH . F 4 HOH A 51 351 96 HOH HOH . F 4 HOH A 52 352 99 HOH HOH . F 4 HOH A 53 353 101 HOH HOH . F 4 HOH A 54 354 102 HOH HOH . F 4 HOH A 55 355 103 HOH HOH . F 4 HOH A 56 356 105 HOH HOH . F 4 HOH A 57 357 106 HOH HOH . F 4 HOH A 58 358 109 HOH HOH . F 4 HOH A 59 359 113 HOH HOH . F 4 HOH A 60 360 118 HOH HOH . F 4 HOH A 61 361 122 HOH HOH . F 4 HOH A 62 362 123 HOH HOH . F 4 HOH A 63 363 124 HOH HOH . F 4 HOH A 64 364 126 HOH HOH . F 4 HOH A 65 365 127 HOH HOH . F 4 HOH A 66 366 128 HOH HOH . F 4 HOH A 67 367 130 HOH HOH . F 4 HOH A 68 368 133 HOH HOH . F 4 HOH A 69 369 134 HOH HOH . F 4 HOH A 70 370 137 HOH HOH . F 4 HOH A 71 371 139 HOH HOH . F 4 HOH A 72 372 142 HOH HOH . F 4 HOH A 73 373 143 HOH HOH . F 4 HOH A 74 374 144 HOH HOH . F 4 HOH A 75 375 145 HOH HOH . F 4 HOH A 76 376 146 HOH HOH . F 4 HOH A 77 377 148 HOH HOH . F 4 HOH A 78 378 149 HOH HOH . F 4 HOH A 79 379 151 HOH HOH . F 4 HOH A 80 380 156 HOH HOH . F 4 HOH A 81 381 157 HOH HOH . F 4 HOH A 82 382 158 HOH HOH . F 4 HOH A 83 383 160 HOH HOH . F 4 HOH A 84 384 161 HOH HOH . F 4 HOH A 85 385 163 HOH HOH . F 4 HOH A 86 386 166 HOH HOH . F 4 HOH A 87 387 167 HOH HOH . F 4 HOH A 88 388 169 HOH HOH . F 4 HOH A 89 389 174 HOH HOH . F 4 HOH A 90 390 178 HOH HOH . F 4 HOH A 91 391 181 HOH HOH . F 4 HOH A 92 392 185 HOH HOH . F 4 HOH A 93 393 186 HOH HOH . F 4 HOH A 94 394 187 HOH HOH . F 4 HOH A 95 395 188 HOH HOH . F 4 HOH A 96 396 190 HOH HOH . F 4 HOH A 97 397 191 HOH HOH . F 4 HOH A 98 398 194 HOH HOH . F 4 HOH A 99 399 195 HOH HOH . F 4 HOH A 100 400 196 HOH HOH . F 4 HOH A 101 401 200 HOH HOH . G 4 HOH B 1 301 136 HOH HOH . G 4 HOH B 2 302 2 HOH HOH . G 4 HOH B 3 303 4 HOH HOH . G 4 HOH B 4 304 5 HOH HOH . G 4 HOH B 5 305 7 HOH HOH . G 4 HOH B 6 306 10 HOH HOH . G 4 HOH B 7 307 11 HOH HOH . G 4 HOH B 8 308 12 HOH HOH . G 4 HOH B 9 309 13 HOH HOH . G 4 HOH B 10 310 14 HOH HOH . G 4 HOH B 11 311 16 HOH HOH . G 4 HOH B 12 312 17 HOH HOH . G 4 HOH B 13 313 18 HOH HOH . G 4 HOH B 14 314 21 HOH HOH . G 4 HOH B 15 315 25 HOH HOH . G 4 HOH B 16 316 27 HOH HOH . G 4 HOH B 17 317 30 HOH HOH . G 4 HOH B 18 318 34 HOH HOH . G 4 HOH B 19 319 40 HOH HOH . G 4 HOH B 20 320 43 HOH HOH . G 4 HOH B 21 321 44 HOH HOH . G 4 HOH B 22 322 47 HOH HOH . G 4 HOH B 23 323 50 HOH HOH . G 4 HOH B 24 324 51 HOH HOH . G 4 HOH B 25 325 54 HOH HOH . G 4 HOH B 26 326 55 HOH HOH . G 4 HOH B 27 327 58 HOH HOH . G 4 HOH B 28 328 59 HOH HOH . G 4 HOH B 29 329 60 HOH HOH . G 4 HOH B 30 330 61 HOH HOH . G 4 HOH B 31 331 64 HOH HOH . G 4 HOH B 32 332 66 HOH HOH . G 4 HOH B 33 333 68 HOH HOH . G 4 HOH B 34 334 69 HOH HOH . G 4 HOH B 35 335 71 HOH HOH . G 4 HOH B 36 336 73 HOH HOH . G 4 HOH B 37 337 74 HOH HOH . G 4 HOH B 38 338 76 HOH HOH . G 4 HOH B 39 339 77 HOH HOH . G 4 HOH B 40 340 78 HOH HOH . G 4 HOH B 41 341 83 HOH HOH . G 4 HOH B 42 342 88 HOH HOH . G 4 HOH B 43 343 91 HOH HOH . G 4 HOH B 44 344 93 HOH HOH . G 4 HOH B 45 345 94 HOH HOH . G 4 HOH B 46 346 97 HOH HOH . G 4 HOH B 47 347 98 HOH HOH . G 4 HOH B 48 348 100 HOH HOH . G 4 HOH B 49 349 104 HOH HOH . G 4 HOH B 50 350 108 HOH HOH . G 4 HOH B 51 351 110 HOH HOH . G 4 HOH B 52 352 111 HOH HOH . G 4 HOH B 53 353 112 HOH HOH . G 4 HOH B 54 354 114 HOH HOH . G 4 HOH B 55 355 115 HOH HOH . G 4 HOH B 56 356 116 HOH HOH . G 4 HOH B 57 357 117 HOH HOH . G 4 HOH B 58 358 119 HOH HOH . G 4 HOH B 59 359 120 HOH HOH . G 4 HOH B 60 360 121 HOH HOH . G 4 HOH B 61 361 125 HOH HOH . G 4 HOH B 62 362 129 HOH HOH . G 4 HOH B 63 363 131 HOH HOH . G 4 HOH B 64 364 132 HOH HOH . G 4 HOH B 65 365 135 HOH HOH . G 4 HOH B 66 366 138 HOH HOH . G 4 HOH B 67 367 140 HOH HOH . G 4 HOH B 68 368 141 HOH HOH . G 4 HOH B 69 369 147 HOH HOH . G 4 HOH B 70 370 150 HOH HOH . G 4 HOH B 71 371 152 HOH HOH . G 4 HOH B 72 372 153 HOH HOH . G 4 HOH B 73 373 159 HOH HOH . G 4 HOH B 74 374 162 HOH HOH . G 4 HOH B 75 375 164 HOH HOH . G 4 HOH B 76 376 165 HOH HOH . G 4 HOH B 77 377 168 HOH HOH . G 4 HOH B 78 378 170 HOH HOH . G 4 HOH B 79 379 171 HOH HOH . G 4 HOH B 80 380 172 HOH HOH . G 4 HOH B 81 381 173 HOH HOH . G 4 HOH B 82 382 175 HOH HOH . G 4 HOH B 83 383 176 HOH HOH . G 4 HOH B 84 384 177 HOH HOH . G 4 HOH B 85 385 179 HOH HOH . G 4 HOH B 86 386 180 HOH HOH . G 4 HOH B 87 387 182 HOH HOH . G 4 HOH B 88 388 183 HOH HOH . G 4 HOH B 89 389 184 HOH HOH . G 4 HOH B 90 390 189 HOH HOH . G 4 HOH B 91 391 192 HOH HOH . G 4 HOH B 92 392 193 HOH HOH . G 4 HOH B 93 393 197 HOH HOH . G 4 HOH B 94 394 198 HOH HOH . G 4 HOH B 95 395 199 HOH HOH . G 4 HOH B 96 396 201 HOH HOH . G 4 HOH B 97 397 202 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 7.726 _atom_site.Cartn_y 32.465 _atom_site.Cartn_z 39.988 _atom_site.occupancy 0.02 _atom_site.B_iso_or_equiv 9.08 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 163 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 141 _model_server_stats.query_time_ms 5384 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #