data_4Q2T # _model_server_result.job_id rOliv-7z9tggI-hV0Y-jdw _model_server_result.datetime_utc '2024-11-24 02:00:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q2t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 4Q2T # _exptl.entry_id 4Q2T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Q2T _cell.length_a 74.485 _cell.length_b 106.901 _cell.length_c 175.248 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q2T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4Q2T _atom_sites.fract_transf_matrix[1][1] 0.013426 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009354 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005706 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ARG A 1 601 800 ARG ARG . D 3 GOL A 1 602 850 GOL GOL . E 2 ARG B 1 601 800 ARG ARG . F 3 GOL B 1 602 850 GOL GOL . G 4 HOH A 1 701 1 HOH HOH . G 4 HOH A 2 702 5 HOH HOH . G 4 HOH A 3 703 6 HOH HOH . G 4 HOH A 4 704 7 HOH HOH . G 4 HOH A 5 705 8 HOH HOH . G 4 HOH A 6 706 17 HOH HOH . G 4 HOH A 7 707 18 HOH HOH . G 4 HOH A 8 708 20 HOH HOH . G 4 HOH A 9 709 21 HOH HOH . G 4 HOH A 10 710 23 HOH HOH . G 4 HOH A 11 711 24 HOH HOH . G 4 HOH A 12 712 26 HOH HOH . G 4 HOH A 13 713 27 HOH HOH . G 4 HOH A 14 714 34 HOH HOH . G 4 HOH A 15 715 37 HOH HOH . G 4 HOH A 16 716 40 HOH HOH . G 4 HOH A 17 717 42 HOH HOH . G 4 HOH A 18 718 44 HOH HOH . G 4 HOH A 19 719 46 HOH HOH . G 4 HOH A 20 720 47 HOH HOH . G 4 HOH A 21 721 48 HOH HOH . G 4 HOH A 22 722 49 HOH HOH . G 4 HOH A 23 723 50 HOH HOH . G 4 HOH A 24 724 52 HOH HOH . G 4 HOH A 25 725 54 HOH HOH . G 4 HOH A 26 726 55 HOH HOH . G 4 HOH A 27 727 58 HOH HOH . G 4 HOH A 28 728 59 HOH HOH . G 4 HOH A 29 729 61 HOH HOH . G 4 HOH A 30 730 67 HOH HOH . G 4 HOH A 31 731 68 HOH HOH . G 4 HOH A 32 732 73 HOH HOH . G 4 HOH A 33 733 75 HOH HOH . G 4 HOH A 34 734 76 HOH HOH . G 4 HOH A 35 735 78 HOH HOH . G 4 HOH A 36 736 79 HOH HOH . G 4 HOH A 37 737 83 HOH HOH . G 4 HOH A 38 738 84 HOH HOH . G 4 HOH A 39 739 87 HOH HOH . G 4 HOH A 40 740 88 HOH HOH . G 4 HOH A 41 741 93 HOH HOH . G 4 HOH A 42 742 94 HOH HOH . G 4 HOH A 43 743 95 HOH HOH . G 4 HOH A 44 744 100 HOH HOH . G 4 HOH A 45 745 101 HOH HOH . G 4 HOH A 46 746 103 HOH HOH . G 4 HOH A 47 747 104 HOH HOH . G 4 HOH A 48 748 106 HOH HOH . G 4 HOH A 49 749 107 HOH HOH . G 4 HOH A 50 750 110 HOH HOH . G 4 HOH A 51 751 111 HOH HOH . G 4 HOH A 52 752 114 HOH HOH . G 4 HOH A 53 753 115 HOH HOH . G 4 HOH A 54 754 118 HOH HOH . G 4 HOH A 55 755 120 HOH HOH . G 4 HOH A 56 756 122 HOH HOH . G 4 HOH A 57 757 123 HOH HOH . G 4 HOH A 58 758 125 HOH HOH . G 4 HOH A 59 759 126 HOH HOH . G 4 HOH A 60 760 129 HOH HOH . G 4 HOH A 61 761 131 HOH HOH . G 4 HOH A 62 762 133 HOH HOH . G 4 HOH A 63 763 134 HOH HOH . G 4 HOH A 64 764 135 HOH HOH . G 4 HOH A 65 765 137 HOH HOH . G 4 HOH A 66 766 138 HOH HOH . G 4 HOH A 67 767 139 HOH HOH . G 4 HOH A 68 768 140 HOH HOH . G 4 HOH A 69 769 142 HOH HOH . G 4 HOH A 70 770 143 HOH HOH . G 4 HOH A 71 771 144 HOH HOH . G 4 HOH A 72 772 145 HOH HOH . G 4 HOH A 73 773 147 HOH HOH . G 4 HOH A 74 774 150 HOH HOH . G 4 HOH A 75 775 153 HOH HOH . G 4 HOH A 76 776 155 HOH HOH . G 4 HOH A 77 777 158 HOH HOH . G 4 HOH A 78 778 159 HOH HOH . G 4 HOH A 79 779 160 HOH HOH . G 4 HOH A 80 780 161 HOH HOH . G 4 HOH A 81 781 162 HOH HOH . G 4 HOH A 82 782 163 HOH HOH . G 4 HOH A 83 783 164 HOH HOH . G 4 HOH A 84 784 166 HOH HOH . G 4 HOH A 85 785 167 HOH HOH . G 4 HOH A 86 786 168 HOH HOH . G 4 HOH A 87 787 169 HOH HOH . G 4 HOH A 88 788 170 HOH HOH . G 4 HOH A 89 789 173 HOH HOH . G 4 HOH A 90 790 174 HOH HOH . G 4 HOH A 91 791 175 HOH HOH . G 4 HOH A 92 792 177 HOH HOH . G 4 HOH A 93 793 179 HOH HOH . G 4 HOH A 94 794 180 HOH HOH . G 4 HOH A 95 795 183 HOH HOH . G 4 HOH A 96 796 184 HOH HOH . G 4 HOH A 97 797 185 HOH HOH . G 4 HOH A 98 798 186 HOH HOH . G 4 HOH A 99 799 189 HOH HOH . G 4 HOH A 100 800 192 HOH HOH . G 4 HOH A 101 801 193 HOH HOH . G 4 HOH A 102 802 195 HOH HOH . G 4 HOH A 103 803 196 HOH HOH . G 4 HOH A 104 804 197 HOH HOH . G 4 HOH A 105 805 199 HOH HOH . G 4 HOH A 106 806 200 HOH HOH . G 4 HOH A 107 807 203 HOH HOH . G 4 HOH A 108 808 204 HOH HOH . G 4 HOH A 109 809 205 HOH HOH . G 4 HOH A 110 810 207 HOH HOH . G 4 HOH A 111 811 208 HOH HOH . G 4 HOH A 112 812 209 HOH HOH . G 4 HOH A 113 813 211 HOH HOH . G 4 HOH A 114 814 212 HOH HOH . G 4 HOH A 115 815 213 HOH HOH . G 4 HOH A 116 816 217 HOH HOH . G 4 HOH A 117 817 218 HOH HOH . G 4 HOH A 118 818 219 HOH HOH . G 4 HOH A 119 819 220 HOH HOH . G 4 HOH A 120 820 221 HOH HOH . G 4 HOH A 121 821 223 HOH HOH . G 4 HOH A 122 822 226 HOH HOH . G 4 HOH A 123 823 227 HOH HOH . G 4 HOH A 124 824 228 HOH HOH . G 4 HOH A 125 825 230 HOH HOH . G 4 HOH A 126 826 231 HOH HOH . G 4 HOH A 127 827 234 HOH HOH . G 4 HOH A 128 828 235 HOH HOH . G 4 HOH A 129 829 237 HOH HOH . G 4 HOH A 130 830 238 HOH HOH . G 4 HOH A 131 831 245 HOH HOH . G 4 HOH A 132 832 246 HOH HOH . G 4 HOH A 133 833 247 HOH HOH . G 4 HOH A 134 834 248 HOH HOH . G 4 HOH A 135 835 250 HOH HOH . G 4 HOH A 136 836 251 HOH HOH . G 4 HOH A 137 837 254 HOH HOH . G 4 HOH A 138 838 257 HOH HOH . G 4 HOH A 139 839 264 HOH HOH . G 4 HOH A 140 840 266 HOH HOH . G 4 HOH A 141 841 268 HOH HOH . G 4 HOH A 142 842 269 HOH HOH . G 4 HOH A 143 843 272 HOH HOH . G 4 HOH A 144 844 275 HOH HOH . G 4 HOH A 145 845 240 HOH HOH . G 4 HOH A 146 846 259 HOH HOH . G 4 HOH A 147 847 260 HOH HOH . H 4 HOH B 1 701 255 HOH HOH . H 4 HOH B 2 702 256 HOH HOH . H 4 HOH B 3 703 2 HOH HOH . H 4 HOH B 4 704 3 HOH HOH . H 4 HOH B 5 705 4 HOH HOH . H 4 HOH B 6 706 9 HOH HOH . H 4 HOH B 7 707 10 HOH HOH . H 4 HOH B 8 708 11 HOH HOH . H 4 HOH B 9 709 12 HOH HOH . H 4 HOH B 10 710 13 HOH HOH . H 4 HOH B 11 711 14 HOH HOH . H 4 HOH B 12 712 15 HOH HOH . H 4 HOH B 13 713 16 HOH HOH . H 4 HOH B 14 714 19 HOH HOH . H 4 HOH B 15 715 22 HOH HOH . H 4 HOH B 16 716 25 HOH HOH . H 4 HOH B 17 717 28 HOH HOH . H 4 HOH B 18 718 29 HOH HOH . H 4 HOH B 19 719 30 HOH HOH . H 4 HOH B 20 720 31 HOH HOH . H 4 HOH B 21 721 32 HOH HOH . H 4 HOH B 22 722 33 HOH HOH . H 4 HOH B 23 723 35 HOH HOH . H 4 HOH B 24 724 36 HOH HOH . H 4 HOH B 25 725 38 HOH HOH . H 4 HOH B 26 726 39 HOH HOH . H 4 HOH B 27 727 41 HOH HOH . H 4 HOH B 28 728 43 HOH HOH . H 4 HOH B 29 729 45 HOH HOH . H 4 HOH B 30 730 51 HOH HOH . H 4 HOH B 31 731 53 HOH HOH . H 4 HOH B 32 732 56 HOH HOH . H 4 HOH B 33 733 57 HOH HOH . H 4 HOH B 34 734 60 HOH HOH . H 4 HOH B 35 735 62 HOH HOH . H 4 HOH B 36 736 63 HOH HOH . H 4 HOH B 37 737 64 HOH HOH . H 4 HOH B 38 738 65 HOH HOH . H 4 HOH B 39 739 66 HOH HOH . H 4 HOH B 40 740 69 HOH HOH . H 4 HOH B 41 741 70 HOH HOH . H 4 HOH B 42 742 71 HOH HOH . H 4 HOH B 43 743 72 HOH HOH . H 4 HOH B 44 744 74 HOH HOH . H 4 HOH B 45 745 77 HOH HOH . H 4 HOH B 46 746 80 HOH HOH . H 4 HOH B 47 747 81 HOH HOH . H 4 HOH B 48 748 82 HOH HOH . H 4 HOH B 49 749 85 HOH HOH . H 4 HOH B 50 750 86 HOH HOH . H 4 HOH B 51 751 89 HOH HOH . H 4 HOH B 52 752 90 HOH HOH . H 4 HOH B 53 753 91 HOH HOH . H 4 HOH B 54 754 92 HOH HOH . H 4 HOH B 55 755 96 HOH HOH . H 4 HOH B 56 756 97 HOH HOH . H 4 HOH B 57 757 98 HOH HOH . H 4 HOH B 58 758 99 HOH HOH . H 4 HOH B 59 759 102 HOH HOH . H 4 HOH B 60 760 105 HOH HOH . H 4 HOH B 61 761 108 HOH HOH . H 4 HOH B 62 762 109 HOH HOH . H 4 HOH B 63 763 112 HOH HOH . H 4 HOH B 64 764 113 HOH HOH . H 4 HOH B 65 765 116 HOH HOH . H 4 HOH B 66 766 117 HOH HOH . H 4 HOH B 67 767 119 HOH HOH . H 4 HOH B 68 768 121 HOH HOH . H 4 HOH B 69 769 124 HOH HOH . H 4 HOH B 70 770 127 HOH HOH . H 4 HOH B 71 771 128 HOH HOH . H 4 HOH B 72 772 130 HOH HOH . H 4 HOH B 73 773 132 HOH HOH . H 4 HOH B 74 774 136 HOH HOH . H 4 HOH B 75 775 141 HOH HOH . H 4 HOH B 76 776 146 HOH HOH . H 4 HOH B 77 777 148 HOH HOH . H 4 HOH B 78 778 149 HOH HOH . H 4 HOH B 79 779 151 HOH HOH . H 4 HOH B 80 780 152 HOH HOH . H 4 HOH B 81 781 154 HOH HOH . H 4 HOH B 82 782 156 HOH HOH . H 4 HOH B 83 783 157 HOH HOH . H 4 HOH B 84 784 165 HOH HOH . H 4 HOH B 85 785 171 HOH HOH . H 4 HOH B 86 786 172 HOH HOH . H 4 HOH B 87 787 176 HOH HOH . H 4 HOH B 88 788 178 HOH HOH . H 4 HOH B 89 789 181 HOH HOH . H 4 HOH B 90 790 182 HOH HOH . H 4 HOH B 91 791 187 HOH HOH . H 4 HOH B 92 792 188 HOH HOH . H 4 HOH B 93 793 190 HOH HOH . H 4 HOH B 94 794 191 HOH HOH . H 4 HOH B 95 795 194 HOH HOH . H 4 HOH B 96 796 198 HOH HOH . H 4 HOH B 97 797 201 HOH HOH . H 4 HOH B 98 798 202 HOH HOH . H 4 HOH B 99 799 206 HOH HOH . H 4 HOH B 100 800 210 HOH HOH . H 4 HOH B 101 801 214 HOH HOH . H 4 HOH B 102 802 215 HOH HOH . H 4 HOH B 103 803 216 HOH HOH . H 4 HOH B 104 804 222 HOH HOH . H 4 HOH B 105 805 224 HOH HOH . H 4 HOH B 106 806 225 HOH HOH . H 4 HOH B 107 807 229 HOH HOH . H 4 HOH B 108 808 232 HOH HOH . H 4 HOH B 109 809 233 HOH HOH . H 4 HOH B 110 810 236 HOH HOH . H 4 HOH B 111 811 239 HOH HOH . H 4 HOH B 112 812 241 HOH HOH . H 4 HOH B 113 813 242 HOH HOH . H 4 HOH B 114 814 243 HOH HOH . H 4 HOH B 115 815 244 HOH HOH . H 4 HOH B 116 816 249 HOH HOH . H 4 HOH B 117 817 252 HOH HOH . H 4 HOH B 118 818 253 HOH HOH . H 4 HOH B 119 819 258 HOH HOH . H 4 HOH B 120 820 261 HOH HOH . H 4 HOH B 121 821 262 HOH HOH . H 4 HOH B 122 822 263 HOH HOH . H 4 HOH B 123 823 265 HOH HOH . H 4 HOH B 124 824 267 HOH HOH . H 4 HOH B 125 825 270 HOH HOH . H 4 HOH B 126 826 271 HOH HOH . H 4 HOH B 127 827 273 HOH HOH . H 4 HOH B 128 828 274 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 83.851 67.087 235.191 1 44.86 ? C1 GOL 602 A 1 HETATM 2 O O1 GOL . . . D 3 84.643 65.911 235.038 1 42.87 ? O1 GOL 602 A 1 HETATM 3 C C2 GOL . . . D 3 83.607 67.78 233.846 1 40.72 ? C2 GOL 602 A 1 HETATM 4 O O2 GOL . . . D 3 82.302 67.458 233.426 1 48.13 ? O2 GOL 602 A 1 HETATM 5 C C3 GOL . . . D 3 83.735 69.308 233.911 1 41.17 ? C3 GOL 602 A 1 HETATM 6 O O3 GOL . . . D 3 84.167 69.82 232.656 1 39.4 ? O3 GOL 602 A 1 HETATM 7 H H11 GOL . . . D 3 82.893 66.822 235.64 1 53.83 ? H11 GOL 602 A 1 HETATM 8 H H12 GOL . . . D 3 84.356 67.778 235.867 1 53.83 ? H12 GOL 602 A 1 HETATM 9 H HO1 GOL . . . D 3 84.836 65.53 235.92 1 51.44 ? HO1 GOL 602 A 1 HETATM 10 H H2 GOL . . . D 3 84.33 67.401 233.124 1 48.86 ? H2 GOL 602 A 1 HETATM 11 H HO2 GOL . . . D 3 81.654 67.832 234.059 1 57.75 ? HO2 GOL 602 A 1 HETATM 12 H H31 GOL . . . D 3 82.772 69.746 234.173 1 49.41 ? H31 GOL 602 A 1 HETATM 13 H H32 GOL . . . D 3 84.453 69.583 234.685 1 49.41 ? H32 GOL 602 A 1 HETATM 14 H HO3 GOL . . . D 3 84.448 70.753 232.763 1 47.28 ? HO3 GOL 602 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #