data_4Q2V # _model_server_result.job_id 1L3SjrVhCqV-EFEHw9vIvA _model_server_result.datetime_utc '2024-12-01 10:36:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q2v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4Q2V # _exptl.entry_id 4Q2V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 446.361 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5,6-dihydroxy-4-oxo-2-phenyl-4H-chromen-7-yl beta-D-glucopyranosiduronic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Q2V _cell.length_a 68.197 _cell.length_b 68.197 _cell.length_c 133.27 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q2V _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H18 O11' _chem_comp.formula_weight 446.361 _chem_comp.id 0XE _chem_comp.mon_nstd_flag . _chem_comp.name '5,6-dihydroxy-4-oxo-2-phenyl-4H-chromen-7-yl beta-D-glucopyranosiduronic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Baicalin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 0XE doub 1 n y C3 C4 0XE sing 2 n y C2 C1 0XE sing 3 n y C4 C5 0XE doub 4 n y C1 C6 0XE doub 5 n y C5 C6 0XE sing 6 n y C5 C7 0XE sing 7 n n C8 C7 0XE doub 8 n n C8 C9 0XE sing 9 n n C7 O12 0XE sing 10 n n O9 C9 0XE doub 11 n n C9 C10 0XE sing 12 n n O12 C11 0XE sing 13 n n C10 C11 0XE sing 14 n y C10 C17 0XE doub 15 n y C11 C14 0XE doub 16 n y O17 C17 0XE sing 17 n n C17 C16 0XE sing 18 n y C14 C15 0XE sing 19 n y C16 C15 0XE doub 20 n y C16 O16 0XE sing 21 n n C15 O18 0XE sing 22 n n O24 C23 0XE doub 23 n n C23 O23 0XE sing 24 n n C23 C22 0XE sing 25 n n O18 C18 0XE sing 26 n n O22 C22 0XE sing 27 n n O22 C18 0XE sing 28 n n C22 C21 0XE sing 29 n n C18 C19 0XE sing 30 n n C21 O21 0XE sing 31 n n C21 C20 0XE sing 32 n n C19 O19 0XE sing 33 n n C19 C20 0XE sing 34 n n C20 O20 0XE sing 35 n n C1 H1 0XE sing 36 n n C2 H2 0XE sing 37 n n C3 H3 0XE sing 38 n n C4 H4 0XE sing 39 n n C6 H5 0XE sing 40 n n C8 H6 0XE sing 41 n n O17 H8 0XE sing 42 n n O16 H9 0XE sing 43 n n C14 H10 0XE sing 44 n n C18 H11 0XE sing 45 n n C22 H12 0XE sing 46 n n O23 H13 0XE sing 47 n n C19 H14 0XE sing 48 n n O19 H15 0XE sing 49 n n C20 H16 0XE sing 50 n n O20 H17 0XE sing 51 n n C21 H18 0XE sing 52 n n O21 H19 0XE sing 53 n n # _atom_sites.entry_id 4Q2V _atom_sites.fract_transf_matrix[1][1] 0.014663 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014663 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007504 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0XE A 1 301 0 0XE OXE . C 3 HOH A 1 401 1 HOH HOH . C 3 HOH A 2 402 2 HOH HOH . C 3 HOH A 3 403 3 HOH HOH . C 3 HOH A 4 404 4 HOH HOH . C 3 HOH A 5 405 5 HOH HOH . C 3 HOH A 6 406 6 HOH HOH . C 3 HOH A 7 407 7 HOH HOH . C 3 HOH A 8 408 8 HOH HOH . C 3 HOH A 9 409 9 HOH HOH . C 3 HOH A 10 410 10 HOH HOH . C 3 HOH A 11 411 11 HOH HOH . C 3 HOH A 12 412 12 HOH HOH . C 3 HOH A 13 413 13 HOH HOH . C 3 HOH A 14 414 14 HOH HOH . C 3 HOH A 15 415 15 HOH HOH . C 3 HOH A 16 416 16 HOH HOH . C 3 HOH A 17 417 17 HOH HOH . C 3 HOH A 18 418 18 HOH HOH . C 3 HOH A 19 419 19 HOH HOH . C 3 HOH A 20 420 20 HOH HOH . C 3 HOH A 21 421 21 HOH HOH . C 3 HOH A 22 422 22 HOH HOH . C 3 HOH A 23 423 23 HOH HOH . C 3 HOH A 24 424 24 HOH HOH . C 3 HOH A 25 425 25 HOH HOH . C 3 HOH A 26 426 26 HOH HOH . C 3 HOH A 27 427 27 HOH HOH . C 3 HOH A 28 428 28 HOH HOH . C 3 HOH A 29 429 29 HOH HOH . C 3 HOH A 30 430 30 HOH HOH . C 3 HOH A 31 431 31 HOH HOH . C 3 HOH A 32 432 32 HOH HOH . C 3 HOH A 33 433 33 HOH HOH . C 3 HOH A 34 434 34 HOH HOH . C 3 HOH A 35 435 35 HOH HOH . C 3 HOH A 36 436 36 HOH HOH . C 3 HOH A 37 437 37 HOH HOH . C 3 HOH A 38 438 38 HOH HOH . C 3 HOH A 39 439 39 HOH HOH . C 3 HOH A 40 440 40 HOH HOH . C 3 HOH A 41 441 41 HOH HOH . C 3 HOH A 42 442 42 HOH HOH . C 3 HOH A 43 443 43 HOH HOH . C 3 HOH A 44 444 44 HOH HOH . C 3 HOH A 45 445 45 HOH HOH . C 3 HOH A 46 446 46 HOH HOH . C 3 HOH A 47 447 47 HOH HOH . C 3 HOH A 48 448 48 HOH HOH . C 3 HOH A 49 449 49 HOH HOH . C 3 HOH A 50 450 50 HOH HOH . C 3 HOH A 51 451 51 HOH HOH . C 3 HOH A 52 452 52 HOH HOH . C 3 HOH A 53 453 53 HOH HOH . C 3 HOH A 54 454 54 HOH HOH . C 3 HOH A 55 455 55 HOH HOH . C 3 HOH A 56 456 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 0XE . . . B 2 21.056 1.412 27.877 1 59.6 ? C1 0XE 301 A 1 HETATM 2 C C2 0XE . . . B 2 19.68 1.49 28.044 1 59.89 ? C2 0XE 301 A 1 HETATM 3 C C3 0XE . . . B 2 18.834 1.292 26.953 1 54.35 ? C3 0XE 301 A 1 HETATM 4 C C4 0XE . . . B 2 19.373 1.005 25.698 1 56.58 ? C4 0XE 301 A 1 HETATM 5 C C5 0XE . . . B 2 20.747 0.908 25.533 1 59.48 ? C5 0XE 301 A 1 HETATM 6 C C6 0XE . . . B 2 21.594 1.134 26.619 1 58.98 ? C6 0XE 301 A 1 HETATM 7 C C7 0XE . . . B 2 21.329 0.634 24.152 1 54.98 ? C7 0XE 301 A 1 HETATM 8 C C8 0XE . . . B 2 22.722 0.524 23.961 1 56.52 ? C8 0XE 301 A 1 HETATM 9 C C9 0XE . . . B 2 23.271 0.296 22.615 1 57.75 ? C9 0XE 301 A 1 HETATM 10 O O9 0XE . . . B 2 24.639 0.17 22.458 1 55.73 ? O9 0XE 301 A 1 HETATM 11 O O12 0XE . . . B 2 20.446 0.555 23.025 1 56.32 ? O12 0XE 301 A 1 HETATM 12 C C11 0XE . . . B 2 20.997 0.339 21.72 1 55.38 ? C11 0XE 301 A 1 HETATM 13 C C10 0XE . . . B 2 22.365 0.201 21.47 1 54.02 ? C10 0XE 301 A 1 HETATM 14 C C17 0XE . . . B 2 22.782 -0.018 20.134 1 53.04 ? C17 0XE 301 A 1 HETATM 15 O O17 0XE . . . B 2 24.129 -0.152 19.848 1 56.37 ? O17 0XE 301 A 1 HETATM 16 C C16 0XE . . . B 2 21.832 -0.092 19.092 1 53.28 ? C16 0XE 301 A 1 HETATM 17 O O16 0XE . . . B 2 22.238 -0.299 17.789 1 59.92 ? O16 0XE 301 A 1 HETATM 18 C C14 0XE . . . B 2 20.057 0.264 20.694 1 54.34 ? C14 0XE 301 A 1 HETATM 19 C C15 0XE . . . B 2 20.466 0.049 19.379 1 55.4 ? C15 0XE 301 A 1 HETATM 20 O O18 0XE . . . B 2 19.773 -0.016 18.277 1 57.96 ? O18 0XE 301 A 1 HETATM 21 C C18 0XE . . . B 2 18.747 0.786 18.389 1 60.21 ? C18 0XE 301 A 1 HETATM 22 O O22 0XE . . . B 2 17.874 0.217 19.444 1 61.32 ? O22 0XE 301 A 1 HETATM 23 C C22 0XE . . . B 2 16.534 0.517 19.388 1 58.02 ? C22 0XE 301 A 1 HETATM 24 C C23 0XE . . . B 2 15.8 -0.412 20.289 1 53.73 ? C23 0XE 301 A 1 HETATM 25 O O24 0XE . . . B 2 16.055 -1.636 20.378 1 49.07 ? O24 0XE 301 A 1 HETATM 26 O O23 0XE . . . B 2 14.902 0.058 20.983 1 51.38 ? O23 0XE 301 A 1 HETATM 27 C C19 0XE . . . B 2 18.149 0.797 17.069 1 60.51 ? C19 0XE 301 A 1 HETATM 28 O O19 0XE . . . B 2 18.915 1.75 16.438 1 64.17 ? O19 0XE 301 A 1 HETATM 29 C C20 0XE . . . B 2 16.784 1.248 17.037 1 64.48 ? C20 0XE 301 A 1 HETATM 30 O O20 0XE . . . B 2 16.257 0.972 15.772 1 67.46 ? O20 0XE 301 A 1 HETATM 31 C C21 0XE . . . B 2 15.935 0.549 18.003 1 65.11 ? C21 0XE 301 A 1 HETATM 32 O O21 0XE . . . B 2 14.737 1.233 18.066 1 53.33 ? O21 0XE 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #