data_4Q2X # _model_server_result.job_id EOTzpDyvE1NLSa4zjtUYcw _model_server_result.datetime_utc '2024-11-23 23:41:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":700}' # _entry.id 4Q2X # _exptl.entry_id 4Q2X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 176.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-CANAVANINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Q2X _cell.length_a 75.393 _cell.length_b 109.31 _cell.length_c 175.011 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q2X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C5 H12 N4 O3' _chem_comp.formula_weight 176.174 _chem_comp.id GGB _chem_comp.mon_nstd_flag . _chem_comp.name L-CANAVANINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms 'L-2-AMINO-4-(GUANIDINOOXY)BUTYRIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GGB sing 83 n n N H GGB sing 84 n n N H2 GGB sing 85 n n CA CB GGB sing 86 n n CA C GGB sing 87 n n CA HA GGB sing 88 n n CB CG GGB sing 89 n n CB HCB1 GGB sing 90 n n CB HCB2 GGB sing 91 n n CG OD GGB sing 92 n n CG HCG1 GGB sing 93 n n CG HCG2 GGB sing 94 n n C O GGB doub 95 n n C OXT GGB sing 96 n n OD NE GGB sing 97 n n NE CZ GGB sing 98 n n NE HNE GGB sing 99 n n CZ NH1 GGB doub 100 e n CZ NH2 GGB sing 101 n n NH1 HN1 GGB sing 102 n n NH2 HN21 GGB sing 103 n n NH2 HN22 GGB sing 104 n n OXT HXT GGB sing 105 n n # _atom_sites.entry_id 4Q2X _atom_sites.fract_transf_matrix[1][1] 0.013264 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005714 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GGB A 1 700 700 GGB GGB . D 2 GGB B 1 700 700 GGB GGB . E 3 HOH A 1 801 1 HOH HOH . E 3 HOH A 2 802 5 HOH HOH . E 3 HOH A 3 803 8 HOH HOH . E 3 HOH A 4 804 11 HOH HOH . E 3 HOH A 5 805 12 HOH HOH . E 3 HOH A 6 806 13 HOH HOH . E 3 HOH A 7 807 14 HOH HOH . E 3 HOH A 8 808 16 HOH HOH . E 3 HOH A 9 809 17 HOH HOH . E 3 HOH A 10 810 21 HOH HOH . E 3 HOH A 11 811 24 HOH HOH . E 3 HOH A 12 812 25 HOH HOH . E 3 HOH A 13 813 27 HOH HOH . E 3 HOH A 14 814 30 HOH HOH . E 3 HOH A 15 815 31 HOH HOH . E 3 HOH A 16 816 33 HOH HOH . E 3 HOH A 17 817 36 HOH HOH . E 3 HOH A 18 818 37 HOH HOH . E 3 HOH A 19 819 39 HOH HOH . E 3 HOH A 20 820 40 HOH HOH . E 3 HOH A 21 821 41 HOH HOH . E 3 HOH A 22 822 44 HOH HOH . E 3 HOH A 23 823 47 HOH HOH . E 3 HOH A 24 824 48 HOH HOH . E 3 HOH A 25 825 49 HOH HOH . E 3 HOH A 26 826 50 HOH HOH . E 3 HOH A 27 827 51 HOH HOH . E 3 HOH A 28 828 52 HOH HOH . E 3 HOH A 29 829 53 HOH HOH . E 3 HOH A 30 830 55 HOH HOH . E 3 HOH A 31 831 58 HOH HOH . E 3 HOH A 32 832 62 HOH HOH . E 3 HOH A 33 833 63 HOH HOH . E 3 HOH A 34 834 65 HOH HOH . E 3 HOH A 35 835 66 HOH HOH . E 3 HOH A 36 836 67 HOH HOH . E 3 HOH A 37 837 68 HOH HOH . E 3 HOH A 38 838 69 HOH HOH . E 3 HOH A 39 839 70 HOH HOH . E 3 HOH A 40 840 72 HOH HOH . E 3 HOH A 41 841 73 HOH HOH . E 3 HOH A 42 842 75 HOH HOH . E 3 HOH A 43 843 76 HOH HOH . E 3 HOH A 44 844 77 HOH HOH . E 3 HOH A 45 845 78 HOH HOH . E 3 HOH A 46 846 79 HOH HOH . E 3 HOH A 47 847 80 HOH HOH . E 3 HOH A 48 848 81 HOH HOH . E 3 HOH A 49 849 85 HOH HOH . E 3 HOH A 50 850 90 HOH HOH . E 3 HOH A 51 851 91 HOH HOH . E 3 HOH A 52 852 92 HOH HOH . E 3 HOH A 53 853 93 HOH HOH . E 3 HOH A 54 854 94 HOH HOH . E 3 HOH A 55 855 96 HOH HOH . E 3 HOH A 56 856 97 HOH HOH . E 3 HOH A 57 857 98 HOH HOH . E 3 HOH A 58 858 99 HOH HOH . E 3 HOH A 59 859 100 HOH HOH . E 3 HOH A 60 860 101 HOH HOH . E 3 HOH A 61 861 102 HOH HOH . E 3 HOH A 62 862 103 HOH HOH . E 3 HOH A 63 863 105 HOH HOH . E 3 HOH A 64 864 106 HOH HOH . E 3 HOH A 65 865 110 HOH HOH . E 3 HOH A 66 866 112 HOH HOH . E 3 HOH A 67 867 114 HOH HOH . E 3 HOH A 68 868 116 HOH HOH . E 3 HOH A 69 869 117 HOH HOH . E 3 HOH A 70 870 118 HOH HOH . E 3 HOH A 71 871 119 HOH HOH . E 3 HOH A 72 872 122 HOH HOH . E 3 HOH A 73 873 123 HOH HOH . E 3 HOH A 74 874 124 HOH HOH . E 3 HOH A 75 875 125 HOH HOH . E 3 HOH A 76 876 126 HOH HOH . E 3 HOH A 77 877 127 HOH HOH . E 3 HOH A 78 878 129 HOH HOH . E 3 HOH A 79 879 133 HOH HOH . E 3 HOH A 80 880 136 HOH HOH . E 3 HOH A 81 881 138 HOH HOH . E 3 HOH A 82 882 139 HOH HOH . E 3 HOH A 83 883 143 HOH HOH . E 3 HOH A 84 884 147 HOH HOH . E 3 HOH A 85 885 150 HOH HOH . E 3 HOH A 86 886 151 HOH HOH . E 3 HOH A 87 887 153 HOH HOH . E 3 HOH A 88 888 154 HOH HOH . E 3 HOH A 89 889 156 HOH HOH . E 3 HOH A 90 890 157 HOH HOH . E 3 HOH A 91 891 160 HOH HOH . E 3 HOH A 92 892 161 HOH HOH . E 3 HOH A 93 893 164 HOH HOH . E 3 HOH A 94 894 165 HOH HOH . E 3 HOH A 95 895 174 HOH HOH . E 3 HOH A 96 896 175 HOH HOH . E 3 HOH A 97 897 181 HOH HOH . E 3 HOH A 98 898 182 HOH HOH . E 3 HOH A 99 899 185 HOH HOH . E 3 HOH A 100 900 186 HOH HOH . E 3 HOH A 101 901 187 HOH HOH . E 3 HOH A 102 902 191 HOH HOH . E 3 HOH A 103 903 192 HOH HOH . E 3 HOH A 104 904 193 HOH HOH . E 3 HOH A 105 905 194 HOH HOH . E 3 HOH A 106 906 195 HOH HOH . E 3 HOH A 107 907 196 HOH HOH . E 3 HOH A 108 908 199 HOH HOH . E 3 HOH A 109 909 200 HOH HOH . E 3 HOH A 110 910 202 HOH HOH . E 3 HOH A 111 911 203 HOH HOH . F 3 HOH B 1 801 2 HOH HOH . F 3 HOH B 2 802 3 HOH HOH . F 3 HOH B 3 803 4 HOH HOH . F 3 HOH B 4 804 6 HOH HOH . F 3 HOH B 5 805 7 HOH HOH . F 3 HOH B 6 806 9 HOH HOH . F 3 HOH B 7 807 10 HOH HOH . F 3 HOH B 8 808 15 HOH HOH . F 3 HOH B 9 809 18 HOH HOH . F 3 HOH B 10 810 19 HOH HOH . F 3 HOH B 11 811 20 HOH HOH . F 3 HOH B 12 812 22 HOH HOH . F 3 HOH B 13 813 23 HOH HOH . F 3 HOH B 14 814 26 HOH HOH . F 3 HOH B 15 815 28 HOH HOH . F 3 HOH B 16 816 29 HOH HOH . F 3 HOH B 17 817 32 HOH HOH . F 3 HOH B 18 818 34 HOH HOH . F 3 HOH B 19 819 35 HOH HOH . F 3 HOH B 20 820 38 HOH HOH . F 3 HOH B 21 821 42 HOH HOH . F 3 HOH B 22 822 43 HOH HOH . F 3 HOH B 23 823 45 HOH HOH . F 3 HOH B 24 824 46 HOH HOH . F 3 HOH B 25 825 54 HOH HOH . F 3 HOH B 26 826 56 HOH HOH . F 3 HOH B 27 827 57 HOH HOH . F 3 HOH B 28 828 59 HOH HOH . F 3 HOH B 29 829 60 HOH HOH . F 3 HOH B 30 830 61 HOH HOH . F 3 HOH B 31 831 64 HOH HOH . F 3 HOH B 32 832 71 HOH HOH . F 3 HOH B 33 833 74 HOH HOH . F 3 HOH B 34 834 82 HOH HOH . F 3 HOH B 35 835 83 HOH HOH . F 3 HOH B 36 836 84 HOH HOH . F 3 HOH B 37 837 86 HOH HOH . F 3 HOH B 38 838 87 HOH HOH . F 3 HOH B 39 839 88 HOH HOH . F 3 HOH B 40 840 89 HOH HOH . F 3 HOH B 41 841 95 HOH HOH . F 3 HOH B 42 842 104 HOH HOH . F 3 HOH B 43 843 107 HOH HOH . F 3 HOH B 44 844 108 HOH HOH . F 3 HOH B 45 845 109 HOH HOH . F 3 HOH B 46 846 111 HOH HOH . F 3 HOH B 47 847 113 HOH HOH . F 3 HOH B 48 848 115 HOH HOH . F 3 HOH B 49 849 120 HOH HOH . F 3 HOH B 50 850 121 HOH HOH . F 3 HOH B 51 851 128 HOH HOH . F 3 HOH B 52 852 131 HOH HOH . F 3 HOH B 53 853 132 HOH HOH . F 3 HOH B 54 854 134 HOH HOH . F 3 HOH B 55 855 135 HOH HOH . F 3 HOH B 56 856 137 HOH HOH . F 3 HOH B 57 857 140 HOH HOH . F 3 HOH B 58 858 141 HOH HOH . F 3 HOH B 59 859 142 HOH HOH . F 3 HOH B 60 860 144 HOH HOH . F 3 HOH B 61 861 145 HOH HOH . F 3 HOH B 62 862 146 HOH HOH . F 3 HOH B 63 863 148 HOH HOH . F 3 HOH B 64 864 149 HOH HOH . F 3 HOH B 65 865 152 HOH HOH . F 3 HOH B 66 866 155 HOH HOH . F 3 HOH B 67 867 158 HOH HOH . F 3 HOH B 68 868 159 HOH HOH . F 3 HOH B 69 869 162 HOH HOH . F 3 HOH B 70 870 163 HOH HOH . F 3 HOH B 71 871 167 HOH HOH . F 3 HOH B 72 872 168 HOH HOH . F 3 HOH B 73 873 169 HOH HOH . F 3 HOH B 74 874 170 HOH HOH . F 3 HOH B 75 875 171 HOH HOH . F 3 HOH B 76 876 172 HOH HOH . F 3 HOH B 77 877 173 HOH HOH . F 3 HOH B 78 878 176 HOH HOH . F 3 HOH B 79 879 177 HOH HOH . F 3 HOH B 80 880 178 HOH HOH . F 3 HOH B 81 881 179 HOH HOH . F 3 HOH B 82 882 180 HOH HOH . F 3 HOH B 83 883 183 HOH HOH . F 3 HOH B 84 884 184 HOH HOH . F 3 HOH B 85 885 188 HOH HOH . F 3 HOH B 86 886 189 HOH HOH . F 3 HOH B 87 887 190 HOH HOH . F 3 HOH B 88 888 197 HOH HOH . F 3 HOH B 89 889 198 HOH HOH . F 3 HOH B 90 890 201 HOH HOH . F 3 HOH B 91 891 204 HOH HOH . F 3 HOH B 92 892 205 HOH HOH . F 3 HOH B 93 893 206 HOH HOH . F 3 HOH B 94 894 207 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GGB . . . D 2 60.258 -13.795 -118.298 1 19.58 ? N GGB 700 B 1 HETATM 2 C CA GGB . . . D 2 61.548 -13.947 -118.915 1 21.58 ? CA GGB 700 B 1 HETATM 3 C CB GGB . . . D 2 62.563 -12.95 -118.408 1 18.12 ? CB GGB 700 B 1 HETATM 4 C CG GGB . . . D 2 62.069 -11.573 -118.659 1 20.09 ? CG GGB 700 B 1 HETATM 5 C C GGB . . . D 2 62.252 -15.241 -118.644 1 22.07 ? C GGB 700 B 1 HETATM 6 O OD GGB . . . D 2 63.256 -10.822 -118.866 1 18.16 ? OD GGB 700 B 1 HETATM 7 N NE GGB . . . D 2 63.055 -9.541 -118.479 1 18.13 ? NE GGB 700 B 1 HETATM 8 C CZ GGB . . . D 2 62.852 -8.623 -119.531 1 23.4 ? CZ GGB 700 B 1 HETATM 9 N NH1 GGB . . . D 2 62.847 -9.057 -120.786 1 22.04 ? NH1 GGB 700 B 1 HETATM 10 N NH2 GGB . . . D 2 62.646 -7.219 -119.228 1 21.7 ? NH2 GGB 700 B 1 HETATM 11 O O GGB . . . D 2 61.722 -16.154 -117.981 1 24.39 ? O GGB 700 B 1 HETATM 12 O OXT GGB . . . D 2 63.409 -15.345 -119.105 1 23.12 ? OXT GGB 700 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #