data_4Q32 # _model_server_result.job_id z5iUQWKI9DX-jmizSH713A _model_server_result.datetime_utc '2024-11-08 05:52:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q32 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":500}' # _entry.id 4Q32 # _exptl.entry_id 4Q32 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Q32 _cell.length_a 77.611 _cell.length_b 77.611 _cell.length_c 222.726 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q32 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 J N N ? 2 L N N # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 224 n n P O2P IMP sing 225 n n P O3P IMP sing 226 n n P O5' IMP sing 227 n n O2P HOP2 IMP sing 228 n n O3P HOP3 IMP sing 229 n n O5' C5' IMP sing 230 n n C5' C4' IMP sing 231 n n C5' "H5'1" IMP sing 232 n n C5' "H5'2" IMP sing 233 n n C4' O4' IMP sing 234 n n C4' C3' IMP sing 235 n n C4' H4' IMP sing 236 n n O4' C1' IMP sing 237 n n C3' O3' IMP sing 238 n n C3' C2' IMP sing 239 n n C3' H3' IMP sing 240 n n O3' HO3' IMP sing 241 n n C2' O2' IMP sing 242 n n C2' C1' IMP sing 243 n n C2' H2' IMP sing 244 n n O2' HO2' IMP sing 245 n n C1' N9 IMP sing 246 n n C1' H1' IMP sing 247 n n N9 C8 IMP sing 248 n y N9 C4 IMP sing 249 n y C8 N7 IMP doub 250 n y C8 H8 IMP sing 251 n n N7 C5 IMP sing 252 n y C5 C6 IMP sing 253 n n C5 C4 IMP doub 254 n y C6 O6 IMP doub 255 n n C6 N1 IMP sing 256 n n N1 C2 IMP sing 257 n n N1 HN1 IMP sing 258 n n C2 N3 IMP doub 259 n n C2 H2 IMP sing 260 n n N3 C4 IMP sing 261 n n # _atom_sites.entry_id 4Q32 _atom_sites.fract_transf_matrix[1][1] 0.012885 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00449 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 IMP A 1 401 500 IMP IMP . F 3 C91 A 1 402 501 C91 C91 . G 3 C91 A 1 403 501 C91 C91 . H 2 IMP B 1 500 500 IMP IMP . I 3 C91 B 1 501 501 C91 C91 . J 2 IMP C 1 500 500 IMP IMP . K 3 C91 D 1 501 501 C91 C91 . L 2 IMP D 1 502 500 IMP IMP . M 4 HOH A 1 501 24 HOH HOH . M 4 HOH A 2 502 26 HOH HOH . M 4 HOH A 3 503 28 HOH HOH . M 4 HOH A 4 504 29 HOH HOH . M 4 HOH A 5 505 30 HOH HOH . M 4 HOH A 6 506 31 HOH HOH . M 4 HOH A 7 507 32 HOH HOH . M 4 HOH A 8 508 33 HOH HOH . M 4 HOH A 9 509 34 HOH HOH . M 4 HOH A 10 510 35 HOH HOH . M 4 HOH A 11 511 36 HOH HOH . M 4 HOH A 12 512 37 HOH HOH . M 4 HOH A 13 513 38 HOH HOH . M 4 HOH A 14 514 44 HOH HOH . M 4 HOH A 15 515 70 HOH HOH . M 4 HOH A 16 516 71 HOH HOH . M 4 HOH A 17 517 72 HOH HOH . M 4 HOH A 18 518 81 HOH HOH . N 4 HOH B 1 601 10 HOH HOH . N 4 HOH B 2 602 11 HOH HOH . N 4 HOH B 3 603 12 HOH HOH . N 4 HOH B 4 604 13 HOH HOH . N 4 HOH B 5 605 21 HOH HOH . N 4 HOH B 6 606 22 HOH HOH . N 4 HOH B 7 607 23 HOH HOH . N 4 HOH B 8 608 39 HOH HOH . N 4 HOH B 9 609 41 HOH HOH . N 4 HOH B 10 610 42 HOH HOH . N 4 HOH B 11 611 43 HOH HOH . N 4 HOH B 12 612 46 HOH HOH . N 4 HOH B 13 613 68 HOH HOH . N 4 HOH B 14 614 73 HOH HOH . N 4 HOH B 15 615 79 HOH HOH . O 4 HOH C 1 601 1 HOH HOH . O 4 HOH C 2 602 2 HOH HOH . O 4 HOH C 3 603 3 HOH HOH . O 4 HOH C 4 604 4 HOH HOH . O 4 HOH C 5 605 5 HOH HOH . O 4 HOH C 6 606 17 HOH HOH . O 4 HOH C 7 607 18 HOH HOH . O 4 HOH C 8 608 19 HOH HOH . O 4 HOH C 9 609 25 HOH HOH . O 4 HOH C 10 610 47 HOH HOH . O 4 HOH C 11 611 48 HOH HOH . O 4 HOH C 12 612 49 HOH HOH . O 4 HOH C 13 613 50 HOH HOH . O 4 HOH C 14 614 51 HOH HOH . O 4 HOH C 15 615 52 HOH HOH . O 4 HOH C 16 616 53 HOH HOH . O 4 HOH C 17 617 54 HOH HOH . O 4 HOH C 18 618 69 HOH HOH . O 4 HOH C 19 619 74 HOH HOH . O 4 HOH C 20 620 75 HOH HOH . O 4 HOH C 21 621 76 HOH HOH . O 4 HOH C 22 622 78 HOH HOH . O 4 HOH C 23 623 80 HOH HOH . P 4 HOH D 1 601 6 HOH HOH . P 4 HOH D 2 602 7 HOH HOH . P 4 HOH D 3 603 8 HOH HOH . P 4 HOH D 4 604 9 HOH HOH . P 4 HOH D 5 605 14 HOH HOH . P 4 HOH D 6 606 15 HOH HOH . P 4 HOH D 7 607 16 HOH HOH . P 4 HOH D 8 608 20 HOH HOH . P 4 HOH D 9 609 27 HOH HOH . P 4 HOH D 10 610 40 HOH HOH . P 4 HOH D 11 611 45 HOH HOH . P 4 HOH D 12 612 55 HOH HOH . P 4 HOH D 13 613 56 HOH HOH . P 4 HOH D 14 614 57 HOH HOH . P 4 HOH D 15 615 58 HOH HOH . P 4 HOH D 16 616 59 HOH HOH . P 4 HOH D 17 617 60 HOH HOH . P 4 HOH D 18 618 61 HOH HOH . P 4 HOH D 19 619 62 HOH HOH . P 4 HOH D 20 620 63 HOH HOH . P 4 HOH D 21 621 64 HOH HOH . P 4 HOH D 22 622 65 HOH HOH . P 4 HOH D 23 623 66 HOH HOH . P 4 HOH D 24 624 67 HOH HOH . P 4 HOH D 25 625 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . J 2 4.722 31.296 4.194 1 40.41 ? P IMP 500 C 1 HETATM 2 O O1P IMP . . . J 2 6.036 30.676 3.781 1 36.77 ? O1P IMP 500 C 1 HETATM 3 O O2P IMP . . . J 2 3.846 30.469 5.105 1 38.7 ? O2P IMP 500 C 1 HETATM 4 O O3P IMP . . . J 2 5.018 32.612 4.88 1 35.68 ? O3P IMP 500 C 1 HETATM 5 O O5' IMP . . . J 2 3.904 31.527 2.841 1 55.51 ? O5' IMP 500 C 1 HETATM 6 C C5' IMP . . . J 2 2.963 32.586 2.7 1 51.83 ? C5' IMP 500 C 1 HETATM 7 C C4' IMP . . . J 2 2.829 33.024 1.258 1 52.01 ? C4' IMP 500 C 1 HETATM 8 O O4' IMP . . . J 2 2.63 31.875 0.395 1 47.59 ? O4' IMP 500 C 1 HETATM 9 C C3' IMP . . . J 2 1.649 33.926 0.93 1 53.78 ? C3' IMP 500 C 1 HETATM 10 O O3' IMP . . . J 2 1.864 35.277 1.299 1 53.75 ? O3' IMP 500 C 1 HETATM 11 C C2' IMP . . . J 2 1.481 33.724 -0.574 1 50.66 ? C2' IMP 500 C 1 HETATM 12 O O2' IMP . . . J 2 2.422 34.509 -1.293 1 48.35 ? O2' IMP 500 C 1 HETATM 13 C C1' IMP . . . J 2 1.86 32.248 -0.733 1 46.86 ? C1' IMP 500 C 1 HETATM 14 N N9 IMP . . . J 2 0.676 31.366 -0.822 1 44.06 ? N9 IMP 500 C 1 HETATM 15 C C8 IMP . . . J 2 -0.466 31.407 -0.06 1 41.73 ? C8 IMP 500 C 1 HETATM 16 N N7 IMP . . . J 2 -1.295 30.413 -0.459 1 35.97 ? N7 IMP 500 C 1 HETATM 17 C C5 IMP . . . J 2 -0.7 29.727 -1.462 1 41.66 ? C5 IMP 500 C 1 HETATM 18 C C6 IMP . . . J 2 -1.103 28.624 -2.219 1 45.1 ? C6 IMP 500 C 1 HETATM 19 O O6 IMP . . . J 2 -2.03 27.909 -1.834 1 42.98 ? O6 IMP 500 C 1 HETATM 20 N N1 IMP . . . J 2 -0.26 28.137 -3.196 1 41.62 ? N1 IMP 500 C 1 HETATM 21 C C2 IMP . . . J 2 0.962 28.737 -3.412 1 36.63 ? C2 IMP 500 C 1 HETATM 22 N N3 IMP . . . J 2 1.357 29.823 -2.659 1 35.85 ? N3 IMP 500 C 1 HETATM 23 C C4 IMP . . . J 2 0.538 30.315 -1.698 1 40.61 ? C4 IMP 500 C 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #