data_4Q32
#
_model_server_result.job_id            0LJyHGs8BZa6i8ncgiTouA 
_model_server_result.datetime_utc      '2024-11-28 15:10:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4q32 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":501}' 
#
_entry.id    4Q32 
#
_exptl.entry_id    4Q32 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              378.426 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(naphthalen-2-yl)-2-[2-(pyridin-2-yl)-1H-benzimidazol-1-yl]acetamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4Q32 
_cell.length_a            77.611 
_cell.length_b            77.611 
_cell.length_c            222.726 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Q32 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 I N N 
? 3 K N N 
#
_chem_comp.formula           'C24 H18 N4 O' 
_chem_comp.formula_weight    378.426 
_chem_comp.id                C91 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(naphthalen-2-yl)-2-[2-(pyridin-2-yl)-1H-benzimidazol-1-yl]acetamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C26 C27 C91 doub 70 n y 
C26 C25 C91 sing 71 n y 
C27 C28 C91 sing 72 n y 
C25 C18 C91 doub 73 n y 
C28 C16 C91 doub 74 n y 
C18 C16 C91 sing 75 n y 
C18 C5 C91 sing 76 n y 
C16 C12 C91 sing 77 n y 
C5 C2 C91 doub 78 n y 
C12 C4 C91 doub 79 n y 
C2 C4 C91 sing 80 n y 
C4 N4 C91 sing 81 n n 
O C13 C91 doub 82 n n 
N4 C13 C91 sing 83 n n 
C13 C17 C91 sing 84 n n 
C40 C39 C91 doub 85 n y 
C40 C41 C91 sing 86 n y 
C39 C38 C91 sing 87 n y 
C41 N42 C91 doub 88 n y 
C38 C37 C91 doub 89 n y 
N42 C37 C91 sing 90 n y 
C37 C6 C91 sing 91 n n 
C17 N1 C91 sing 92 n n 
C6 N1 C91 sing 93 n y 
C6 N3 C91 doub 94 n y 
N1 C10 C91 sing 95 n y 
N3 C11 C91 sing 96 n y 
C10 C11 C91 doub 97 n y 
C10 C1 C91 sing 98 n y 
C11 C9 C91 sing 99 n y 
C1 C3 C91 doub 100 n y 
C9 C14 C91 doub 101 n y 
C3 C14 C91 sing 102 n y 
N4 H1 C91 sing 103 n n 
C2 H2 C91 sing 104 n n 
C5 H3 C91 sing 105 n n 
C25 H4 C91 sing 106 n n 
C26 H5 C91 sing 107 n n 
C27 H6 C91 sing 108 n n 
C28 H7 C91 sing 109 n n 
C12 H8 C91 sing 110 n n 
C17 H9 C91 sing 111 n n 
C17 H10 C91 sing 112 n n 
C38 H11 C91 sing 113 n n 
C39 H12 C91 sing 114 n n 
C40 H13 C91 sing 115 n n 
C41 H14 C91 sing 116 n n 
C1 H15 C91 sing 117 n n 
C3 H16 C91 sing 118 n n 
C14 H17 C91 sing 119 n n 
C9 H18 C91 sing 120 n n 
#
_atom_sites.entry_id                     4Q32 
_atom_sites.fract_transf_matrix[1][1]    0.012885 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012885 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00449 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 IMP A 1 401 500 IMP IMP . 
F 3 C91 A 1 402 501 C91 C91 . 
G 3 C91 A 1 403 501 C91 C91 . 
H 2 IMP B 1 500 500 IMP IMP . 
I 3 C91 B 1 501 501 C91 C91 . 
J 2 IMP C 1 500 500 IMP IMP . 
K 3 C91 D 1 501 501 C91 C91 . 
L 2 IMP D 1 502 500 IMP IMP . 
M 4 HOH A 1 501 24 HOH HOH . 
M 4 HOH A 2 502 26 HOH HOH . 
M 4 HOH A 3 503 28 HOH HOH . 
M 4 HOH A 4 504 29 HOH HOH . 
M 4 HOH A 5 505 30 HOH HOH . 
M 4 HOH A 6 506 31 HOH HOH . 
M 4 HOH A 7 507 32 HOH HOH . 
M 4 HOH A 8 508 33 HOH HOH . 
M 4 HOH A 9 509 34 HOH HOH . 
M 4 HOH A 10 510 35 HOH HOH . 
M 4 HOH A 11 511 36 HOH HOH . 
M 4 HOH A 12 512 37 HOH HOH . 
M 4 HOH A 13 513 38 HOH HOH . 
M 4 HOH A 14 514 44 HOH HOH . 
M 4 HOH A 15 515 70 HOH HOH . 
M 4 HOH A 16 516 71 HOH HOH . 
M 4 HOH A 17 517 72 HOH HOH . 
M 4 HOH A 18 518 81 HOH HOH . 
N 4 HOH B 1 601 10 HOH HOH . 
N 4 HOH B 2 602 11 HOH HOH . 
N 4 HOH B 3 603 12 HOH HOH . 
N 4 HOH B 4 604 13 HOH HOH . 
N 4 HOH B 5 605 21 HOH HOH . 
N 4 HOH B 6 606 22 HOH HOH . 
N 4 HOH B 7 607 23 HOH HOH . 
N 4 HOH B 8 608 39 HOH HOH . 
N 4 HOH B 9 609 41 HOH HOH . 
N 4 HOH B 10 610 42 HOH HOH . 
N 4 HOH B 11 611 43 HOH HOH . 
N 4 HOH B 12 612 46 HOH HOH . 
N 4 HOH B 13 613 68 HOH HOH . 
N 4 HOH B 14 614 73 HOH HOH . 
N 4 HOH B 15 615 79 HOH HOH . 
O 4 HOH C 1 601 1 HOH HOH . 
O 4 HOH C 2 602 2 HOH HOH . 
O 4 HOH C 3 603 3 HOH HOH . 
O 4 HOH C 4 604 4 HOH HOH . 
O 4 HOH C 5 605 5 HOH HOH . 
O 4 HOH C 6 606 17 HOH HOH . 
O 4 HOH C 7 607 18 HOH HOH . 
O 4 HOH C 8 608 19 HOH HOH . 
O 4 HOH C 9 609 25 HOH HOH . 
O 4 HOH C 10 610 47 HOH HOH . 
O 4 HOH C 11 611 48 HOH HOH . 
O 4 HOH C 12 612 49 HOH HOH . 
O 4 HOH C 13 613 50 HOH HOH . 
O 4 HOH C 14 614 51 HOH HOH . 
O 4 HOH C 15 615 52 HOH HOH . 
O 4 HOH C 16 616 53 HOH HOH . 
O 4 HOH C 17 617 54 HOH HOH . 
O 4 HOH C 18 618 69 HOH HOH . 
O 4 HOH C 19 619 74 HOH HOH . 
O 4 HOH C 20 620 75 HOH HOH . 
O 4 HOH C 21 621 76 HOH HOH . 
O 4 HOH C 22 622 78 HOH HOH . 
O 4 HOH C 23 623 80 HOH HOH . 
P 4 HOH D 1 601 6 HOH HOH . 
P 4 HOH D 2 602 7 HOH HOH . 
P 4 HOH D 3 603 8 HOH HOH . 
P 4 HOH D 4 604 9 HOH HOH . 
P 4 HOH D 5 605 14 HOH HOH . 
P 4 HOH D 6 606 15 HOH HOH . 
P 4 HOH D 7 607 16 HOH HOH . 
P 4 HOH D 8 608 20 HOH HOH . 
P 4 HOH D 9 609 27 HOH HOH . 
P 4 HOH D 10 610 40 HOH HOH . 
P 4 HOH D 11 611 45 HOH HOH . 
P 4 HOH D 12 612 55 HOH HOH . 
P 4 HOH D 13 613 56 HOH HOH . 
P 4 HOH D 14 614 57 HOH HOH . 
P 4 HOH D 15 615 58 HOH HOH . 
P 4 HOH D 16 616 59 HOH HOH . 
P 4 HOH D 17 617 60 HOH HOH . 
P 4 HOH D 18 618 61 HOH HOH . 
P 4 HOH D 19 619 62 HOH HOH . 
P 4 HOH D 20 620 63 HOH HOH . 
P 4 HOH D 21 621 64 HOH HOH . 
P 4 HOH D 22 622 65 HOH HOH . 
P 4 HOH D 23 623 66 HOH HOH . 
P 4 HOH D 24 624 67 HOH HOH . 
P 4 HOH D 25 625 77 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O C91 . . . K 3 -4.401 30.438 -10.134 1 74.73 ? O C91 501 D 1 
HETATM 2 C C13 C91 . . . K 3 -3.855 29.364 -9.999 1 72.4 ? C13 C91 501 D 1 
HETATM 3 N N4 C91 . . . K 3 -2.845 28.863 -10.881 1 69.12 ? N4 C91 501 D 1 
HETATM 4 C C4 C91 . . . K 3 -2.305 29.517 -12.048 1 67.94 ? C4 C91 501 D 1 
HETATM 5 C C2 C91 . . . K 3 -1.122 29.069 -12.61 1 64.86 ? C2 C91 501 D 1 
HETATM 6 C C5 C91 . . . K 3 -0.571 29.703 -13.755 1 60.02 ? C5 C91 501 D 1 
HETATM 7 C C18 C91 . . . K 3 -1.246 30.819 -14.338 1 62.95 ? C18 C91 501 D 1 
HETATM 8 C C25 C91 . . . K 3 -0.694 31.48 -15.513 1 62.54 ? C25 C91 501 D 1 
HETATM 9 C C26 C91 . . . K 3 -1.378 32.593 -16.085 1 64 ? C26 C91 501 D 1 
HETATM 10 C C27 C91 . . . K 3 -2.572 33.051 -15.524 1 62.18 ? C27 C91 501 D 1 
HETATM 11 C C28 C91 . . . K 3 -3.109 32.416 -14.389 1 60.97 ? C28 C91 501 D 1 
HETATM 12 C C16 C91 . . . K 3 -2.408 31.268 -13.794 1 64.43 ? C16 C91 501 D 1 
HETATM 13 C C12 C91 . . . K 3 -2.962 30.617 -12.629 1 65.52 ? C12 C91 501 D 1 
HETATM 14 C C17 C91 . . . K 3 -4.252 28.518 -8.852 1 74.41 ? C17 C91 501 D 1 
HETATM 15 N N1 C91 . . . K 3 -5.084 29.107 -7.782 1 76.05 ? N1 C91 501 D 1 
HETATM 16 C C6 C91 . . . K 3 -4.671 29.771 -6.674 1 75.7 ? C6 C91 501 D 1 
HETATM 17 C C37 C91 . . . K 3 -3.223 30.109 -6.272 1 80.11 ? C37 C91 501 D 1 
HETATM 18 C C38 C91 . . . K 3 -2.984 31.308 -5.586 1 85.27 ? C38 C91 501 D 1 
HETATM 19 C C39 C91 . . . K 3 -1.676 31.65 -5.205 1 87.87 ? C39 C91 501 D 1 
HETATM 20 C C40 C91 . . . K 3 -0.643 30.768 -5.535 1 85.76 ? C40 C91 501 D 1 
HETATM 21 C C41 C91 . . . K 3 -0.947 29.584 -6.223 1 83 ? C41 C91 501 D 1 
HETATM 22 N N42 C91 . . . K 3 -2.21 29.279 -6.572 1 80.68 ? N42 C91 501 D 1 
HETATM 23 N N3 C91 . . . K 3 -5.76 30.138 -5.952 1 72.08 ? N3 C91 501 D 1 
HETATM 24 C C11 C91 . . . K 3 -6.917 29.689 -6.596 1 73.88 ? C11 C91 501 D 1 
HETATM 25 C C10 C91 . . . K 3 -6.489 29.044 -7.74 1 76.55 ? C10 C91 501 D 1 
HETATM 26 C C1 C91 . . . K 3 -7.439 28.461 -8.633 1 74.87 ? C1 C91 501 D 1 
HETATM 27 C C3 C91 . . . K 3 -8.822 28.548 -8.344 1 72.76 ? C3 C91 501 D 1 
HETATM 28 C C14 C91 . . . K 3 -9.263 29.211 -7.173 1 70.88 ? C14 C91 501 D 1 
HETATM 29 C C9 C91 . . . K 3 -8.337 29.779 -6.301 1 70.53 ? C9 C91 501 D 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           29 
#