data_4Q32 # _model_server_result.job_id 5I26IFi9IPvBf3OWYbZSYQ _model_server_result.datetime_utc '2024-11-08 05:54:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q32 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":501}' # _entry.id 4Q32 # _exptl.entry_id 4Q32 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 378.426 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(naphthalen-2-yl)-2-[2-(pyridin-2-yl)-1H-benzimidazol-1-yl]acetamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Q32 _cell.length_a 77.611 _cell.length_b 77.611 _cell.length_c 222.726 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q32 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 I N N ? 3 K N N # _chem_comp.formula 'C24 H18 N4 O' _chem_comp.formula_weight 378.426 _chem_comp.id C91 _chem_comp.mon_nstd_flag . _chem_comp.name N-(naphthalen-2-yl)-2-[2-(pyridin-2-yl)-1H-benzimidazol-1-yl]acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 C27 C91 doub 70 n y C26 C25 C91 sing 71 n y C27 C28 C91 sing 72 n y C25 C18 C91 doub 73 n y C28 C16 C91 doub 74 n y C18 C16 C91 sing 75 n y C18 C5 C91 sing 76 n y C16 C12 C91 sing 77 n y C5 C2 C91 doub 78 n y C12 C4 C91 doub 79 n y C2 C4 C91 sing 80 n y C4 N4 C91 sing 81 n n O C13 C91 doub 82 n n N4 C13 C91 sing 83 n n C13 C17 C91 sing 84 n n C40 C39 C91 doub 85 n y C40 C41 C91 sing 86 n y C39 C38 C91 sing 87 n y C41 N42 C91 doub 88 n y C38 C37 C91 doub 89 n y N42 C37 C91 sing 90 n y C37 C6 C91 sing 91 n n C17 N1 C91 sing 92 n n C6 N1 C91 sing 93 n y C6 N3 C91 doub 94 n y N1 C10 C91 sing 95 n y N3 C11 C91 sing 96 n y C10 C11 C91 doub 97 n y C10 C1 C91 sing 98 n y C11 C9 C91 sing 99 n y C1 C3 C91 doub 100 n y C9 C14 C91 doub 101 n y C3 C14 C91 sing 102 n y N4 H1 C91 sing 103 n n C2 H2 C91 sing 104 n n C5 H3 C91 sing 105 n n C25 H4 C91 sing 106 n n C26 H5 C91 sing 107 n n C27 H6 C91 sing 108 n n C28 H7 C91 sing 109 n n C12 H8 C91 sing 110 n n C17 H9 C91 sing 111 n n C17 H10 C91 sing 112 n n C38 H11 C91 sing 113 n n C39 H12 C91 sing 114 n n C40 H13 C91 sing 115 n n C41 H14 C91 sing 116 n n C1 H15 C91 sing 117 n n C3 H16 C91 sing 118 n n C14 H17 C91 sing 119 n n C9 H18 C91 sing 120 n n # _atom_sites.entry_id 4Q32 _atom_sites.fract_transf_matrix[1][1] 0.012885 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00449 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 IMP A 1 401 500 IMP IMP . F 3 C91 A 1 402 501 C91 C91 . G 3 C91 A 1 403 501 C91 C91 . H 2 IMP B 1 500 500 IMP IMP . I 3 C91 B 1 501 501 C91 C91 . J 2 IMP C 1 500 500 IMP IMP . K 3 C91 D 1 501 501 C91 C91 . L 2 IMP D 1 502 500 IMP IMP . M 4 HOH A 1 501 24 HOH HOH . M 4 HOH A 2 502 26 HOH HOH . M 4 HOH A 3 503 28 HOH HOH . M 4 HOH A 4 504 29 HOH HOH . M 4 HOH A 5 505 30 HOH HOH . M 4 HOH A 6 506 31 HOH HOH . M 4 HOH A 7 507 32 HOH HOH . M 4 HOH A 8 508 33 HOH HOH . M 4 HOH A 9 509 34 HOH HOH . M 4 HOH A 10 510 35 HOH HOH . M 4 HOH A 11 511 36 HOH HOH . M 4 HOH A 12 512 37 HOH HOH . M 4 HOH A 13 513 38 HOH HOH . M 4 HOH A 14 514 44 HOH HOH . M 4 HOH A 15 515 70 HOH HOH . M 4 HOH A 16 516 71 HOH HOH . M 4 HOH A 17 517 72 HOH HOH . M 4 HOH A 18 518 81 HOH HOH . N 4 HOH B 1 601 10 HOH HOH . N 4 HOH B 2 602 11 HOH HOH . N 4 HOH B 3 603 12 HOH HOH . N 4 HOH B 4 604 13 HOH HOH . N 4 HOH B 5 605 21 HOH HOH . N 4 HOH B 6 606 22 HOH HOH . N 4 HOH B 7 607 23 HOH HOH . N 4 HOH B 8 608 39 HOH HOH . N 4 HOH B 9 609 41 HOH HOH . N 4 HOH B 10 610 42 HOH HOH . N 4 HOH B 11 611 43 HOH HOH . N 4 HOH B 12 612 46 HOH HOH . N 4 HOH B 13 613 68 HOH HOH . N 4 HOH B 14 614 73 HOH HOH . N 4 HOH B 15 615 79 HOH HOH . O 4 HOH C 1 601 1 HOH HOH . O 4 HOH C 2 602 2 HOH HOH . O 4 HOH C 3 603 3 HOH HOH . O 4 HOH C 4 604 4 HOH HOH . O 4 HOH C 5 605 5 HOH HOH . O 4 HOH C 6 606 17 HOH HOH . O 4 HOH C 7 607 18 HOH HOH . O 4 HOH C 8 608 19 HOH HOH . O 4 HOH C 9 609 25 HOH HOH . O 4 HOH C 10 610 47 HOH HOH . O 4 HOH C 11 611 48 HOH HOH . O 4 HOH C 12 612 49 HOH HOH . O 4 HOH C 13 613 50 HOH HOH . O 4 HOH C 14 614 51 HOH HOH . O 4 HOH C 15 615 52 HOH HOH . O 4 HOH C 16 616 53 HOH HOH . O 4 HOH C 17 617 54 HOH HOH . O 4 HOH C 18 618 69 HOH HOH . O 4 HOH C 19 619 74 HOH HOH . O 4 HOH C 20 620 75 HOH HOH . O 4 HOH C 21 621 76 HOH HOH . O 4 HOH C 22 622 78 HOH HOH . O 4 HOH C 23 623 80 HOH HOH . P 4 HOH D 1 601 6 HOH HOH . P 4 HOH D 2 602 7 HOH HOH . P 4 HOH D 3 603 8 HOH HOH . P 4 HOH D 4 604 9 HOH HOH . P 4 HOH D 5 605 14 HOH HOH . P 4 HOH D 6 606 15 HOH HOH . P 4 HOH D 7 607 16 HOH HOH . P 4 HOH D 8 608 20 HOH HOH . P 4 HOH D 9 609 27 HOH HOH . P 4 HOH D 10 610 40 HOH HOH . P 4 HOH D 11 611 45 HOH HOH . P 4 HOH D 12 612 55 HOH HOH . P 4 HOH D 13 613 56 HOH HOH . P 4 HOH D 14 614 57 HOH HOH . P 4 HOH D 15 615 58 HOH HOH . P 4 HOH D 16 616 59 HOH HOH . P 4 HOH D 17 617 60 HOH HOH . P 4 HOH D 18 618 61 HOH HOH . P 4 HOH D 19 619 62 HOH HOH . P 4 HOH D 20 620 63 HOH HOH . P 4 HOH D 21 621 64 HOH HOH . P 4 HOH D 22 622 65 HOH HOH . P 4 HOH D 23 623 66 HOH HOH . P 4 HOH D 24 624 67 HOH HOH . P 4 HOH D 25 625 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O C91 . . . K 3 -4.401 30.438 -10.134 1 74.73 ? O C91 501 D 1 HETATM 2 C C13 C91 . . . K 3 -3.855 29.364 -9.999 1 72.4 ? C13 C91 501 D 1 HETATM 3 N N4 C91 . . . K 3 -2.845 28.863 -10.881 1 69.12 ? N4 C91 501 D 1 HETATM 4 C C4 C91 . . . K 3 -2.305 29.517 -12.048 1 67.94 ? C4 C91 501 D 1 HETATM 5 C C2 C91 . . . K 3 -1.122 29.069 -12.61 1 64.86 ? C2 C91 501 D 1 HETATM 6 C C5 C91 . . . K 3 -0.571 29.703 -13.755 1 60.02 ? C5 C91 501 D 1 HETATM 7 C C18 C91 . . . K 3 -1.246 30.819 -14.338 1 62.95 ? C18 C91 501 D 1 HETATM 8 C C25 C91 . . . K 3 -0.694 31.48 -15.513 1 62.54 ? C25 C91 501 D 1 HETATM 9 C C26 C91 . . . K 3 -1.378 32.593 -16.085 1 64 ? C26 C91 501 D 1 HETATM 10 C C27 C91 . . . K 3 -2.572 33.051 -15.524 1 62.18 ? C27 C91 501 D 1 HETATM 11 C C28 C91 . . . K 3 -3.109 32.416 -14.389 1 60.97 ? C28 C91 501 D 1 HETATM 12 C C16 C91 . . . K 3 -2.408 31.268 -13.794 1 64.43 ? C16 C91 501 D 1 HETATM 13 C C12 C91 . . . K 3 -2.962 30.617 -12.629 1 65.52 ? C12 C91 501 D 1 HETATM 14 C C17 C91 . . . K 3 -4.252 28.518 -8.852 1 74.41 ? C17 C91 501 D 1 HETATM 15 N N1 C91 . . . K 3 -5.084 29.107 -7.782 1 76.05 ? N1 C91 501 D 1 HETATM 16 C C6 C91 . . . K 3 -4.671 29.771 -6.674 1 75.7 ? C6 C91 501 D 1 HETATM 17 C C37 C91 . . . K 3 -3.223 30.109 -6.272 1 80.11 ? C37 C91 501 D 1 HETATM 18 C C38 C91 . . . K 3 -2.984 31.308 -5.586 1 85.27 ? C38 C91 501 D 1 HETATM 19 C C39 C91 . . . K 3 -1.676 31.65 -5.205 1 87.87 ? C39 C91 501 D 1 HETATM 20 C C40 C91 . . . K 3 -0.643 30.768 -5.535 1 85.76 ? C40 C91 501 D 1 HETATM 21 C C41 C91 . . . K 3 -0.947 29.584 -6.223 1 83 ? C41 C91 501 D 1 HETATM 22 N N42 C91 . . . K 3 -2.21 29.279 -6.572 1 80.68 ? N42 C91 501 D 1 HETATM 23 N N3 C91 . . . K 3 -5.76 30.138 -5.952 1 72.08 ? N3 C91 501 D 1 HETATM 24 C C11 C91 . . . K 3 -6.917 29.689 -6.596 1 73.88 ? C11 C91 501 D 1 HETATM 25 C C10 C91 . . . K 3 -6.489 29.044 -7.74 1 76.55 ? C10 C91 501 D 1 HETATM 26 C C1 C91 . . . K 3 -7.439 28.461 -8.633 1 74.87 ? C1 C91 501 D 1 HETATM 27 C C3 C91 . . . K 3 -8.822 28.548 -8.344 1 72.76 ? C3 C91 501 D 1 HETATM 28 C C14 C91 . . . K 3 -9.263 29.211 -7.173 1 70.88 ? C14 C91 501 D 1 HETATM 29 C C9 C91 . . . K 3 -8.337 29.779 -6.301 1 70.53 ? C9 C91 501 D 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 29 #