data_4Q33 # _model_server_result.job_id qUSEQBIjZb7w0zSr8F3FFA _model_server_result.datetime_utc '2024-11-28 21:09:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q33 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":500}' # _entry.id 4Q33 # _exptl.entry_id 4Q33 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 70.82 _cell.angle_beta 72.66 _cell.angle_gamma 79.3 _cell.entry_id 4Q33 _cell.length_a 88.121 _cell.length_b 89.247 _cell.length_c 99.185 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q33 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O,P,Q,JA,KA,LA,MA 1 1 E,F,G,H,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,NA,OA,PA,QA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 K N N ? 2 N N N ? 2 P N N ? 2 R N N ? 2 V N N ? 2 CA N N ? 2 FA N N # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 241 n n P O2P IMP sing 242 n n P O3P IMP sing 243 n n P O5' IMP sing 244 n n O2P HOP2 IMP sing 245 n n O3P HOP3 IMP sing 246 n n O5' C5' IMP sing 247 n n C5' C4' IMP sing 248 n n C5' "H5'1" IMP sing 249 n n C5' "H5'2" IMP sing 250 n n C4' O4' IMP sing 251 n n C4' C3' IMP sing 252 n n C4' H4' IMP sing 253 n n O4' C1' IMP sing 254 n n C3' O3' IMP sing 255 n n C3' C2' IMP sing 256 n n C3' H3' IMP sing 257 n n O3' HO3' IMP sing 258 n n C2' O2' IMP sing 259 n n C2' C1' IMP sing 260 n n C2' H2' IMP sing 261 n n O2' HO2' IMP sing 262 n n C1' N9 IMP sing 263 n n C1' H1' IMP sing 264 n n N9 C8 IMP sing 265 n y N9 C4 IMP sing 266 n y C8 N7 IMP doub 267 n y C8 H8 IMP sing 268 n n N7 C5 IMP sing 269 n y C5 C6 IMP sing 270 n n C5 C4 IMP doub 271 n y C6 O6 IMP doub 272 n n C6 N1 IMP sing 273 n n N1 C2 IMP sing 274 n n N1 HN1 IMP sing 275 n n C2 N3 IMP doub 276 n n C2 H2 IMP sing 277 n n N3 C4 IMP sing 278 n n # _atom_sites.entry_id 4Q33 _atom_sites.fract_transf_matrix[1][1] 0.011348 _atom_sites.fract_transf_matrix[1][2] -0.002145 _atom_sites.fract_transf_matrix[1][3] -0.003052 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011403 _atom_sites.fract_transf_matrix[2][3] -0.003472 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011041 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 IMP A 1 500 500 IMP IMP . J 3 2YA A 1 501 501 2YA Z11 . K 2 IMP B 1 501 500 IMP IMP . L 3 2YA B 1 502 501 2YA Z11 . M 3 2YA B 1 503 501 2YA Z11 . N 2 IMP C 1 500 500 IMP IMP . O 3 2YA C 1 501 501 2YA Z11 . P 2 IMP D 1 501 500 IMP IMP . Q 4 ACY D 1 502 502 ACY ACY . R 2 IMP E 1 500 500 IMP IMP . S 3 2YA E 1 501 501 2YA Z11 . T 5 FMT E 1 502 502 FMT FMT . U 6 SO4 E 1 503 503 SO4 SO4 . V 2 IMP F 1 500 500 IMP IMP . W 3 2YA F 1 501 501 2YA Z11 . X 5 FMT F 1 502 502 FMT FMT . Y 7 GOL F 1 503 503 GOL GOL . Z 5 FMT F 1 504 504 FMT FMT . AA 5 FMT F 1 505 505 FMT FMT . BA 7 GOL F 1 506 506 GOL GOL . CA 2 IMP G 1 500 500 IMP IMP . DA 3 2YA G 1 501 501 2YA Z11 . EA 5 FMT G 1 502 502 FMT FMT . FA 2 IMP H 1 500 500 IMP IMP . GA 3 2YA H 1 501 501 2YA Z11 . HA 5 FMT H 1 502 502 FMT FMT . IA 5 FMT H 1 503 503 FMT FMT . JA 8 HOH A 1 601 7 HOH HOH . JA 8 HOH A 2 602 26 HOH HOH . JA 8 HOH A 3 603 29 HOH HOH . JA 8 HOH A 4 604 30 HOH HOH . JA 8 HOH A 5 605 35 HOH HOH . JA 8 HOH A 6 606 37 HOH HOH . JA 8 HOH A 7 607 44 HOH HOH . JA 8 HOH A 8 608 45 HOH HOH . JA 8 HOH A 9 609 46 HOH HOH . JA 8 HOH A 10 610 69 HOH HOH . JA 8 HOH A 11 611 70 HOH HOH . JA 8 HOH A 12 612 71 HOH HOH . JA 8 HOH A 13 613 72 HOH HOH . JA 8 HOH A 14 614 73 HOH HOH . JA 8 HOH A 15 615 79 HOH HOH . JA 8 HOH A 16 616 36 HOH HOH . KA 8 HOH B 1 601 1 HOH HOH . KA 8 HOH B 2 602 2 HOH HOH . KA 8 HOH B 3 603 6 HOH HOH . KA 8 HOH B 4 604 32 HOH HOH . KA 8 HOH B 5 605 41 HOH HOH . KA 8 HOH B 6 606 43 HOH HOH . KA 8 HOH B 7 607 53 HOH HOH . KA 8 HOH B 8 608 56 HOH HOH . KA 8 HOH B 9 609 57 HOH HOH . KA 8 HOH B 10 610 66 HOH HOH . KA 8 HOH B 11 611 67 HOH HOH . KA 8 HOH B 12 612 75 HOH HOH . KA 8 HOH B 13 613 76 HOH HOH . KA 8 HOH B 14 614 77 HOH HOH . KA 8 HOH B 15 615 78 HOH HOH . LA 8 HOH C 1 601 51 HOH HOH . LA 8 HOH C 2 602 3 HOH HOH . LA 8 HOH C 3 603 4 HOH HOH . LA 8 HOH C 4 604 5 HOH HOH . LA 8 HOH C 5 605 38 HOH HOH . LA 8 HOH C 6 606 48 HOH HOH . LA 8 HOH C 7 607 50 HOH HOH . LA 8 HOH C 8 608 52 HOH HOH . LA 8 HOH C 9 609 68 HOH HOH . LA 8 HOH C 10 610 86 HOH HOH . LA 8 HOH C 11 611 87 HOH HOH . LA 8 HOH C 12 612 88 HOH HOH . LA 8 HOH C 13 613 89 HOH HOH . LA 8 HOH C 14 614 92 HOH HOH . LA 8 HOH C 15 615 93 HOH HOH . LA 8 HOH C 16 616 125 HOH HOH . MA 8 HOH D 1 601 8 HOH HOH . MA 8 HOH D 2 602 9 HOH HOH . MA 8 HOH D 3 603 31 HOH HOH . MA 8 HOH D 4 604 33 HOH HOH . MA 8 HOH D 5 605 34 HOH HOH . MA 8 HOH D 6 606 42 HOH HOH . MA 8 HOH D 7 607 49 HOH HOH . MA 8 HOH D 8 608 58 HOH HOH . MA 8 HOH D 9 609 59 HOH HOH . MA 8 HOH D 10 610 83 HOH HOH . MA 8 HOH D 11 611 90 HOH HOH . MA 8 HOH D 12 612 91 HOH HOH . MA 8 HOH D 13 613 94 HOH HOH . MA 8 HOH D 14 614 118 HOH HOH . MA 8 HOH D 15 615 122 HOH HOH . MA 8 HOH D 16 616 128 HOH HOH . MA 8 HOH D 17 617 135 HOH HOH . NA 8 HOH E 1 601 10 HOH HOH . NA 8 HOH E 2 602 11 HOH HOH . NA 8 HOH E 3 603 12 HOH HOH . NA 8 HOH E 4 604 13 HOH HOH . NA 8 HOH E 5 605 14 HOH HOH . NA 8 HOH E 6 606 24 HOH HOH . NA 8 HOH E 7 607 28 HOH HOH . NA 8 HOH E 8 608 39 HOH HOH . NA 8 HOH E 9 609 40 HOH HOH . NA 8 HOH E 10 610 55 HOH HOH . NA 8 HOH E 11 611 60 HOH HOH . NA 8 HOH E 12 612 61 HOH HOH . NA 8 HOH E 13 613 65 HOH HOH . NA 8 HOH E 14 614 74 HOH HOH . NA 8 HOH E 15 615 96 HOH HOH . NA 8 HOH E 16 616 97 HOH HOH . NA 8 HOH E 17 617 98 HOH HOH . NA 8 HOH E 18 618 105 HOH HOH . NA 8 HOH E 19 619 106 HOH HOH . NA 8 HOH E 20 620 107 HOH HOH . NA 8 HOH E 21 621 126 HOH HOH . NA 8 HOH E 22 622 127 HOH HOH . OA 8 HOH F 1 601 15 HOH HOH . OA 8 HOH F 2 602 16 HOH HOH . OA 8 HOH F 3 603 17 HOH HOH . OA 8 HOH F 4 604 18 HOH HOH . OA 8 HOH F 5 605 19 HOH HOH . OA 8 HOH F 6 606 62 HOH HOH . OA 8 HOH F 7 607 63 HOH HOH . OA 8 HOH F 8 608 64 HOH HOH . OA 8 HOH F 9 609 84 HOH HOH . OA 8 HOH F 10 610 85 HOH HOH . OA 8 HOH F 11 611 99 HOH HOH . OA 8 HOH F 12 612 100 HOH HOH . OA 8 HOH F 13 613 101 HOH HOH . OA 8 HOH F 14 614 102 HOH HOH . OA 8 HOH F 15 615 103 HOH HOH . OA 8 HOH F 16 616 104 HOH HOH . OA 8 HOH F 17 617 108 HOH HOH . OA 8 HOH F 18 618 109 HOH HOH . OA 8 HOH F 19 619 110 HOH HOH . OA 8 HOH F 20 620 112 HOH HOH . OA 8 HOH F 21 621 124 HOH HOH . OA 8 HOH F 22 622 129 HOH HOH . OA 8 HOH F 23 623 136 HOH HOH . PA 8 HOH G 1 601 21 HOH HOH . PA 8 HOH G 2 602 22 HOH HOH . PA 8 HOH G 3 603 23 HOH HOH . PA 8 HOH G 4 604 25 HOH HOH . PA 8 HOH G 5 605 47 HOH HOH . PA 8 HOH G 6 606 80 HOH HOH . PA 8 HOH G 7 607 81 HOH HOH . PA 8 HOH G 8 608 123 HOH HOH . PA 8 HOH G 9 609 132 HOH HOH . PA 8 HOH G 10 610 133 HOH HOH . PA 8 HOH G 11 611 134 HOH HOH . QA 8 HOH H 1 601 20 HOH HOH . QA 8 HOH H 2 602 27 HOH HOH . QA 8 HOH H 3 603 54 HOH HOH . QA 8 HOH H 4 604 82 HOH HOH . QA 8 HOH H 5 605 95 HOH HOH . QA 8 HOH H 6 606 111 HOH HOH . QA 8 HOH H 7 607 113 HOH HOH . QA 8 HOH H 8 608 114 HOH HOH . QA 8 HOH H 9 609 115 HOH HOH . QA 8 HOH H 10 610 116 HOH HOH . QA 8 HOH H 11 611 117 HOH HOH . QA 8 HOH H 12 612 119 HOH HOH . QA 8 HOH H 13 613 120 HOH HOH . QA 8 HOH H 14 614 121 HOH HOH . QA 8 HOH H 15 615 130 HOH HOH . QA 8 HOH H 16 616 131 HOH HOH . QA 8 HOH H 17 617 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . V 2 -2.962 29.955 48.179 1 37.97 ? P IMP 500 F 1 HETATM 2 O O1P IMP . . . V 2 -2.205 31.038 47.454 1 33.46 ? O1P IMP 500 F 1 HETATM 3 O O2P IMP . . . V 2 -3.019 30.294 49.641 1 38.76 ? O2P IMP 500 F 1 HETATM 4 O O3P IMP . . . V 2 -2.362 28.623 47.795 1 39.19 ? O3P IMP 500 F 1 HETATM 5 O O5' IMP . . . V 2 -4.465 29.951 47.653 1 24.61 ? O5' IMP 500 F 1 HETATM 6 C C5' IMP . . . V 2 -5.196 31.161 47.516 1 24.78 ? C5' IMP 500 F 1 HETATM 7 C C4' IMP . . . V 2 -6.393 30.987 46.614 1 33.3 ? C4' IMP 500 F 1 HETATM 8 O O4' IMP . . . V 2 -7.213 29.899 47.095 1 41.19 ? O4' IMP 500 F 1 HETATM 9 C C3' IMP . . . V 2 -7.354 32.161 46.553 1 37.46 ? C3' IMP 500 F 1 HETATM 10 O O3' IMP . . . V 2 -6.906 33.194 45.693 1 35.19 ? O3' IMP 500 F 1 HETATM 11 C C2' IMP . . . V 2 -8.663 31.513 46.104 1 37.32 ? C2' IMP 500 F 1 HETATM 12 O O2' IMP . . . V 2 -8.708 31.378 44.692 1 34.85 ? O2' IMP 500 F 1 HETATM 13 C C1' IMP . . . V 2 -8.557 30.113 46.72 1 44.09 ? C1' IMP 500 F 1 HETATM 14 N N9 IMP . . . V 2 -9.406 29.964 47.915 1 46.9 ? N9 IMP 500 F 1 HETATM 15 C C8 IMP . . . V 2 -9.652 30.897 48.845 1 45.98 ? C8 IMP 500 F 1 HETATM 16 N N7 IMP . . . V 2 -10.478 30.394 49.801 1 40.15 ? N7 IMP 500 F 1 HETATM 17 C C5 IMP . . . V 2 -10.778 29.093 49.478 1 38.67 ? C5 IMP 500 F 1 HETATM 18 C C6 IMP . . . V 2 -11.557 28.051 50.037 1 34.33 ? C6 IMP 500 F 1 HETATM 19 O O6 IMP . . . V 2 -12.288 28.255 51.273 1 36.07 ? O6 IMP 500 F 1 HETATM 20 N N1 IMP . . . V 2 -11.61 26.841 49.394 1 28.47 ? N1 IMP 500 F 1 HETATM 21 C C2 IMP . . . V 2 -10.95 26.626 48.264 1 28 ? C2 IMP 500 F 1 HETATM 22 N N3 IMP . . . V 2 -10.207 27.573 47.701 1 33.28 ? N3 IMP 500 F 1 HETATM 23 C C4 IMP . . . V 2 -10.091 28.816 48.267 1 40.88 ? C4 IMP 500 F 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 256 _model_server_stats.query_time_ms 1065 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 23 #