data_4Q36 # _model_server_result.job_id 3QuHeFNNSrMZiiPkMA4qdg _model_server_result.datetime_utc '2024-11-26 07:35:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q36 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 4Q36 # _exptl.entry_id 4Q36 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 179.171 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-amino-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4Q36 _cell.length_a 133.298 _cell.length_b 133.298 _cell.length_c 49.112 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q36 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H13 N O5' _chem_comp.formula_weight 179.171 _chem_comp.id GCS _chem_comp.mon_nstd_flag . _chem_comp.name 2-amino-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-glucosamine;2-amino-2-deoxy-beta-D-glucose;2-amino-2-deoxy-D-glucose;2-amino-2-deoxy-glucose;D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GCS sing 179 n n C1 O1 GCS sing 180 n n C1 O5 GCS sing 181 n n C1 H1 GCS sing 182 n n C2 C3 GCS sing 183 n n C2 N2 GCS sing 184 n n C2 H2 GCS sing 185 n n C3 C4 GCS sing 186 n n C3 O3 GCS sing 187 n n C3 H3 GCS sing 188 n n C4 C5 GCS sing 189 n n C4 O4 GCS sing 190 n n C4 H4 GCS sing 191 n n C5 C6 GCS sing 192 n n C5 O5 GCS sing 193 n n C5 H5 GCS sing 194 n n C6 O6 GCS sing 195 n n C6 H61 GCS sing 196 n n C6 H62 GCS sing 197 n n N2 HN21 GCS sing 198 n n N2 HN22 GCS sing 199 n n O1 HO1 GCS sing 200 n n O3 HO3 GCS sing 201 n n O4 HO4 GCS sing 202 n n O6 HO6 GCS sing 203 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GCS DGlcpNb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GCS b-D-glucopyranosamine 'COMMON NAME' GMML 1 GCS b-D-GlcpN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GCS GlcN 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4Q36 _atom_sites.fract_transf_matrix[1][1] 0.007502 _atom_sites.fract_transf_matrix[1][2] 0.004331 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008663 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020362 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 1 SO4 SO4 . C 2 SO4 A 1 402 3 SO4 SO4 . D 2 SO4 A 1 403 5 SO4 SO4 . E 3 GCS A 1 404 1 GCS GCS . F 4 CO8 A 1 405 1 CO8 CO8 . G 5 HOH A 1 501 2 HOH HOH . G 5 HOH A 2 502 3 HOH HOH . G 5 HOH A 3 503 4 HOH HOH . G 5 HOH A 4 504 5 HOH HOH . G 5 HOH A 5 505 6 HOH HOH . G 5 HOH A 6 506 7 HOH HOH . G 5 HOH A 7 507 8 HOH HOH . G 5 HOH A 8 508 10 HOH HOH . G 5 HOH A 9 509 11 HOH HOH . G 5 HOH A 10 510 12 HOH HOH . G 5 HOH A 11 511 13 HOH HOH . G 5 HOH A 12 512 15 HOH HOH . G 5 HOH A 13 513 16 HOH HOH . G 5 HOH A 14 514 18 HOH HOH . G 5 HOH A 15 515 21 HOH HOH . G 5 HOH A 16 516 22 HOH HOH . G 5 HOH A 17 517 23 HOH HOH . G 5 HOH A 18 518 24 HOH HOH . G 5 HOH A 19 519 26 HOH HOH . G 5 HOH A 20 520 27 HOH HOH . G 5 HOH A 21 521 28 HOH HOH . G 5 HOH A 22 522 30 HOH HOH . G 5 HOH A 23 523 31 HOH HOH . G 5 HOH A 24 524 36 HOH HOH . G 5 HOH A 25 525 37 HOH HOH . G 5 HOH A 26 526 38 HOH HOH . G 5 HOH A 27 527 39 HOH HOH . G 5 HOH A 28 528 40 HOH HOH . G 5 HOH A 29 529 41 HOH HOH . G 5 HOH A 30 530 42 HOH HOH . G 5 HOH A 31 531 43 HOH HOH . G 5 HOH A 32 532 44 HOH HOH . G 5 HOH A 33 533 46 HOH HOH . G 5 HOH A 34 534 48 HOH HOH . G 5 HOH A 35 535 50 HOH HOH . G 5 HOH A 36 536 54 HOH HOH . G 5 HOH A 37 537 55 HOH HOH . G 5 HOH A 38 538 57 HOH HOH . G 5 HOH A 39 539 58 HOH HOH . G 5 HOH A 40 540 59 HOH HOH . G 5 HOH A 41 541 62 HOH HOH . G 5 HOH A 42 542 66 HOH HOH . G 5 HOH A 43 543 67 HOH HOH . G 5 HOH A 44 544 70 HOH HOH . G 5 HOH A 45 545 72 HOH HOH . G 5 HOH A 46 546 78 HOH HOH . G 5 HOH A 47 547 79 HOH HOH . G 5 HOH A 48 548 80 HOH HOH . G 5 HOH A 49 549 81 HOH HOH . G 5 HOH A 50 550 82 HOH HOH . G 5 HOH A 51 551 86 HOH HOH . G 5 HOH A 52 552 88 HOH HOH . G 5 HOH A 53 553 91 HOH HOH . G 5 HOH A 54 554 93 HOH HOH . G 5 HOH A 55 555 94 HOH HOH . G 5 HOH A 56 556 99 HOH HOH . G 5 HOH A 57 557 102 HOH HOH . G 5 HOH A 58 558 105 HOH HOH . G 5 HOH A 59 559 106 HOH HOH . G 5 HOH A 60 560 107 HOH HOH . G 5 HOH A 61 561 124 HOH HOH . G 5 HOH A 62 562 128 HOH HOH . G 5 HOH A 63 563 137 HOH HOH . G 5 HOH A 64 564 165 HOH HOH . G 5 HOH A 65 565 167 HOH HOH . G 5 HOH A 66 566 174 HOH HOH . G 5 HOH A 67 567 176 HOH HOH . G 5 HOH A 68 568 177 HOH HOH . G 5 HOH A 69 569 178 HOH HOH . G 5 HOH A 70 570 179 HOH HOH . G 5 HOH A 71 571 180 HOH HOH . G 5 HOH A 72 572 181 HOH HOH . G 5 HOH A 73 573 182 HOH HOH . G 5 HOH A 74 574 183 HOH HOH . G 5 HOH A 75 575 184 HOH HOH . G 5 HOH A 76 576 185 HOH HOH . G 5 HOH A 77 577 186 HOH HOH . G 5 HOH A 78 578 187 HOH HOH . G 5 HOH A 79 579 188 HOH HOH . G 5 HOH A 80 580 189 HOH HOH . G 5 HOH A 81 581 190 HOH HOH . G 5 HOH A 82 582 191 HOH HOH . G 5 HOH A 83 583 192 HOH HOH . G 5 HOH A 84 584 193 HOH HOH . G 5 HOH A 85 585 194 HOH HOH . G 5 HOH A 86 586 196 HOH HOH . G 5 HOH A 87 587 197 HOH HOH . G 5 HOH A 88 588 200 HOH HOH . G 5 HOH A 89 589 201 HOH HOH . G 5 HOH A 90 590 202 HOH HOH . G 5 HOH A 91 591 203 HOH HOH . G 5 HOH A 92 592 204 HOH HOH . G 5 HOH A 93 593 205 HOH HOH . G 5 HOH A 94 594 206 HOH HOH . G 5 HOH A 95 595 207 HOH HOH . G 5 HOH A 96 596 208 HOH HOH . G 5 HOH A 97 597 209 HOH HOH . G 5 HOH A 98 598 210 HOH HOH . G 5 HOH A 99 599 211 HOH HOH . G 5 HOH A 100 600 212 HOH HOH . G 5 HOH A 101 601 213 HOH HOH . G 5 HOH A 102 602 214 HOH HOH . G 5 HOH A 103 603 215 HOH HOH . G 5 HOH A 104 604 216 HOH HOH . G 5 HOH A 105 605 217 HOH HOH . G 5 HOH A 106 606 218 HOH HOH . G 5 HOH A 107 607 219 HOH HOH . G 5 HOH A 108 608 220 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GCS . A . E 3 -47.644 -3.668 0.72 0.5 82.62 ? C1 GCS 404 A 1 HETATM 2 C C1 GCS . B . E 3 -47.845 -3.64 0.856 0.5 88.65 ? C1 GCS 404 A 1 HETATM 3 C C2 GCS . A . E 3 -47.771 -4.886 -0.199 0.5 80.29 ? C2 GCS 404 A 1 HETATM 4 C C2 GCS . B . E 3 -47.96 -4.883 -0.005 0.5 91.99 ? C2 GCS 404 A 1 HETATM 5 C C3 GCS . A . E 3 -48.282 -4.432 -1.565 0.5 72.67 ? C3 GCS 404 A 1 HETATM 6 C C3 GCS . B . E 3 -48.473 -4.365 -1.333 0.5 90.35 ? C3 GCS 404 A 1 HETATM 7 C C4 GCS . A . E 3 -49.589 -3.668 -1.412 0.5 69.54 ? C4 GCS 404 A 1 HETATM 8 C C4 GCS . B . E 3 -49.845 -3.755 -1.174 0.5 85.7 ? C4 GCS 404 A 1 HETATM 9 C C5 GCS . A . E 3 -49.436 -2.587 -0.335 0.5 70.57 ? C5 GCS 404 A 1 HETATM 10 C C5 GCS . B . E 3 -49.753 -2.675 -0.107 0.5 84.44 ? C5 GCS 404 A 1 HETATM 11 C C6 GCS . A . E 3 -50.743 -1.903 -0.004 0.5 65.3 ? C6 GCS 404 A 1 HETATM 12 C C6 GCS . B . E 3 -51.059 -2.064 0.277 0.5 77.47 ? C6 GCS 404 A 1 HETATM 13 N N2 GCS . A . E 3 -46.481 -5.533 -0.342 0.5 86.69 ? N2 GCS 404 A 1 HETATM 14 N N2 GCS . B . E 3 -46.672 -5.483 -0.183 0.5 98.23 ? N2 GCS 404 A 1 HETATM 15 O O1 GCS . A . E 3 -47.025 -3.984 1.984 0.5 81.12 ? O1 GCS 404 A 1 HETATM 16 O O1 GCS . B . E 3 -47.105 -3.855 2.064 0.5 79.55 ? O1 GCS 404 A 1 HETATM 17 O O3 GCS . A . E 3 -48.451 -5.532 -2.457 0.5 64.56 ? O3 GCS 404 A 1 HETATM 18 O O3 GCS . B . E 3 -48.465 -5.357 -2.341 0.5 84.49 ? O3 GCS 404 A 1 HETATM 19 O O4 GCS . A . E 3 -49.911 -3.09 -2.684 0.5 62.02 ? O4 GCS 404 A 1 HETATM 20 O O4 GCS . B . E 3 -50.125 -3.165 -2.433 0.5 88.63 ? O4 GCS 404 A 1 HETATM 21 O O5 GCS . A . E 3 -48.956 -3.13 0.894 0.5 77.83 ? O5 GCS 404 A 1 HETATM 22 O O5 GCS . B . E 3 -49.183 -3.21 1.077 0.5 86.53 ? O5 GCS 404 A 1 HETATM 23 O O6 GCS . A . E 3 -50.494 -0.857 0.937 0.5 65.75 ? O6 GCS 404 A 1 HETATM 24 O O6 GCS . B . E 3 -50.723 -0.7 0.238 0.5 74.39 ? O6 GCS 404 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #