data_4Q36 # _model_server_result.job_id 0o6v4N7vrfwi-p59lcJeFA _model_server_result.datetime_utc '2024-11-26 07:51:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q36 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 4Q36 # _exptl.entry_id 4Q36 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 893.73 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OCTANOYL-COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4Q36 _cell.length_a 133.298 _cell.length_b 133.298 _cell.length_c 49.112 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q36 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H50 N7 O17 P3 S' _chem_comp.formula_weight 893.73 _chem_comp.id CO8 _chem_comp.mon_nstd_flag . _chem_comp.name 'OCTANOYL-COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A CO8 sing 70 n y N1A C6A CO8 doub 71 n y C2A N3A CO8 doub 72 n y C2A H2A CO8 sing 73 n n N3A C4A CO8 sing 74 n y C4A C5A CO8 doub 75 n y C4A N9A CO8 sing 76 n y C5A C6A CO8 sing 77 n y C5A N7A CO8 sing 78 n y C6A N6A CO8 sing 79 n n N6A H61A CO8 sing 80 n n N6A H62A CO8 sing 81 n n N7A C8A CO8 doub 82 n y C8A N9A CO8 sing 83 n y C8A H8A CO8 sing 84 n n N9A C1B CO8 sing 85 n n C1B C2B CO8 sing 86 n n C1B O4B CO8 sing 87 n n C1B H1B CO8 sing 88 n n C2B O2B CO8 sing 89 n n C2B C3B CO8 sing 90 n n C2B H2B CO8 sing 91 n n O2B HO2A CO8 sing 92 n n C3B O3B CO8 sing 93 n n C3B C4B CO8 sing 94 n n C3B H3B CO8 sing 95 n n O3B P3B CO8 sing 96 n n P3B O7A CO8 doub 97 n n P3B O8A CO8 sing 98 n n P3B O9A CO8 sing 99 n n O8A HOA8 CO8 sing 100 n n O9A HOA9 CO8 sing 101 n n C4B O4B CO8 sing 102 n n C4B C5B CO8 sing 103 n n C4B H4B CO8 sing 104 n n C5B O5B CO8 sing 105 n n C5B H51A CO8 sing 106 n n C5B H52A CO8 sing 107 n n O5B P1A CO8 sing 108 n n P1A O1A CO8 doub 109 n n P1A O2A CO8 sing 110 n n P1A O3A CO8 sing 111 n n O2A HOA2 CO8 sing 112 n n O3A P2A CO8 sing 113 n n P2A O4A CO8 doub 114 n n P2A O5A CO8 sing 115 n n P2A O6A CO8 sing 116 n n O5A HOA5 CO8 sing 117 n n O6A CCP CO8 sing 118 n n CBP CCP CO8 sing 119 n n CBP CDP CO8 sing 120 n n CBP CEP CO8 sing 121 n n CBP CAP CO8 sing 122 n n CCP H121 CO8 sing 123 n n CCP H122 CO8 sing 124 n n CDP H131 CO8 sing 125 n n CDP H132 CO8 sing 126 n n CDP H133 CO8 sing 127 n n CEP H141 CO8 sing 128 n n CEP H142 CO8 sing 129 n n CEP H143 CO8 sing 130 n n CAP OAP CO8 sing 131 n n CAP C9P CO8 sing 132 n n CAP H10 CO8 sing 133 n n OAP HO1 CO8 sing 134 n n C9P O9P CO8 doub 135 n n C9P N8P CO8 sing 136 n n N8P C7P CO8 sing 137 n n N8P HN8 CO8 sing 138 n n C7P C6P CO8 sing 139 n n C7P H71 CO8 sing 140 n n C7P H72 CO8 sing 141 n n C6P C5P CO8 sing 142 n n C6P H61 CO8 sing 143 n n C6P H62 CO8 sing 144 n n C5P O5P CO8 doub 145 n n C5P N4P CO8 sing 146 n n N4P C3P CO8 sing 147 n n N4P HN4 CO8 sing 148 n n C3P C2P CO8 sing 149 n n C3P H31 CO8 sing 150 n n C3P H32 CO8 sing 151 n n C2P S1P CO8 sing 152 n n C2P H21 CO8 sing 153 n n C2P H22 CO8 sing 154 n n S1P C1' CO8 sing 155 n n C1' O1' CO8 doub 156 n n C1' C2' CO8 sing 157 n n C2' C3' CO8 sing 158 n n C2' "H2'1" CO8 sing 159 n n C2' "H2'2" CO8 sing 160 n n C3' C4' CO8 sing 161 n n C3' "H3'1" CO8 sing 162 n n C3' "H3'2" CO8 sing 163 n n C4' C5' CO8 sing 164 n n C4' "H4'1" CO8 sing 165 n n C4' "H4'2" CO8 sing 166 n n C5' C6' CO8 sing 167 n n C5' "H5'1" CO8 sing 168 n n C5' "H5'2" CO8 sing 169 n n C6' C7' CO8 sing 170 n n C6' "H6'1" CO8 sing 171 n n C6' "H6'2" CO8 sing 172 n n C7' C8' CO8 sing 173 n n C7' "H7'1" CO8 sing 174 n n C7' "H7'2" CO8 sing 175 n n C8' "H8'1" CO8 sing 176 n n C8' "H8'2" CO8 sing 177 n n C8' "H8'3" CO8 sing 178 n n # _atom_sites.entry_id 4Q36 _atom_sites.fract_transf_matrix[1][1] 0.007502 _atom_sites.fract_transf_matrix[1][2] 0.004331 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008663 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020362 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 1 SO4 SO4 . C 2 SO4 A 1 402 3 SO4 SO4 . D 2 SO4 A 1 403 5 SO4 SO4 . E 3 GCS A 1 404 1 GCS GCS . F 4 CO8 A 1 405 1 CO8 CO8 . G 5 HOH A 1 501 2 HOH HOH . G 5 HOH A 2 502 3 HOH HOH . G 5 HOH A 3 503 4 HOH HOH . G 5 HOH A 4 504 5 HOH HOH . G 5 HOH A 5 505 6 HOH HOH . G 5 HOH A 6 506 7 HOH HOH . G 5 HOH A 7 507 8 HOH HOH . G 5 HOH A 8 508 10 HOH HOH . G 5 HOH A 9 509 11 HOH HOH . G 5 HOH A 10 510 12 HOH HOH . G 5 HOH A 11 511 13 HOH HOH . G 5 HOH A 12 512 15 HOH HOH . G 5 HOH A 13 513 16 HOH HOH . G 5 HOH A 14 514 18 HOH HOH . G 5 HOH A 15 515 21 HOH HOH . G 5 HOH A 16 516 22 HOH HOH . G 5 HOH A 17 517 23 HOH HOH . G 5 HOH A 18 518 24 HOH HOH . G 5 HOH A 19 519 26 HOH HOH . G 5 HOH A 20 520 27 HOH HOH . G 5 HOH A 21 521 28 HOH HOH . G 5 HOH A 22 522 30 HOH HOH . G 5 HOH A 23 523 31 HOH HOH . G 5 HOH A 24 524 36 HOH HOH . G 5 HOH A 25 525 37 HOH HOH . G 5 HOH A 26 526 38 HOH HOH . G 5 HOH A 27 527 39 HOH HOH . G 5 HOH A 28 528 40 HOH HOH . G 5 HOH A 29 529 41 HOH HOH . G 5 HOH A 30 530 42 HOH HOH . G 5 HOH A 31 531 43 HOH HOH . G 5 HOH A 32 532 44 HOH HOH . G 5 HOH A 33 533 46 HOH HOH . G 5 HOH A 34 534 48 HOH HOH . G 5 HOH A 35 535 50 HOH HOH . G 5 HOH A 36 536 54 HOH HOH . G 5 HOH A 37 537 55 HOH HOH . G 5 HOH A 38 538 57 HOH HOH . G 5 HOH A 39 539 58 HOH HOH . G 5 HOH A 40 540 59 HOH HOH . G 5 HOH A 41 541 62 HOH HOH . G 5 HOH A 42 542 66 HOH HOH . G 5 HOH A 43 543 67 HOH HOH . G 5 HOH A 44 544 70 HOH HOH . G 5 HOH A 45 545 72 HOH HOH . G 5 HOH A 46 546 78 HOH HOH . G 5 HOH A 47 547 79 HOH HOH . G 5 HOH A 48 548 80 HOH HOH . G 5 HOH A 49 549 81 HOH HOH . G 5 HOH A 50 550 82 HOH HOH . G 5 HOH A 51 551 86 HOH HOH . G 5 HOH A 52 552 88 HOH HOH . G 5 HOH A 53 553 91 HOH HOH . G 5 HOH A 54 554 93 HOH HOH . G 5 HOH A 55 555 94 HOH HOH . G 5 HOH A 56 556 99 HOH HOH . G 5 HOH A 57 557 102 HOH HOH . G 5 HOH A 58 558 105 HOH HOH . G 5 HOH A 59 559 106 HOH HOH . G 5 HOH A 60 560 107 HOH HOH . G 5 HOH A 61 561 124 HOH HOH . G 5 HOH A 62 562 128 HOH HOH . G 5 HOH A 63 563 137 HOH HOH . G 5 HOH A 64 564 165 HOH HOH . G 5 HOH A 65 565 167 HOH HOH . G 5 HOH A 66 566 174 HOH HOH . G 5 HOH A 67 567 176 HOH HOH . G 5 HOH A 68 568 177 HOH HOH . G 5 HOH A 69 569 178 HOH HOH . G 5 HOH A 70 570 179 HOH HOH . G 5 HOH A 71 571 180 HOH HOH . G 5 HOH A 72 572 181 HOH HOH . G 5 HOH A 73 573 182 HOH HOH . G 5 HOH A 74 574 183 HOH HOH . G 5 HOH A 75 575 184 HOH HOH . G 5 HOH A 76 576 185 HOH HOH . G 5 HOH A 77 577 186 HOH HOH . G 5 HOH A 78 578 187 HOH HOH . G 5 HOH A 79 579 188 HOH HOH . G 5 HOH A 80 580 189 HOH HOH . G 5 HOH A 81 581 190 HOH HOH . G 5 HOH A 82 582 191 HOH HOH . G 5 HOH A 83 583 192 HOH HOH . G 5 HOH A 84 584 193 HOH HOH . G 5 HOH A 85 585 194 HOH HOH . G 5 HOH A 86 586 196 HOH HOH . G 5 HOH A 87 587 197 HOH HOH . G 5 HOH A 88 588 200 HOH HOH . G 5 HOH A 89 589 201 HOH HOH . G 5 HOH A 90 590 202 HOH HOH . G 5 HOH A 91 591 203 HOH HOH . G 5 HOH A 92 592 204 HOH HOH . G 5 HOH A 93 593 205 HOH HOH . G 5 HOH A 94 594 206 HOH HOH . G 5 HOH A 95 595 207 HOH HOH . G 5 HOH A 96 596 208 HOH HOH . G 5 HOH A 97 597 209 HOH HOH . G 5 HOH A 98 598 210 HOH HOH . G 5 HOH A 99 599 211 HOH HOH . G 5 HOH A 100 600 212 HOH HOH . G 5 HOH A 101 601 213 HOH HOH . G 5 HOH A 102 602 214 HOH HOH . G 5 HOH A 103 603 215 HOH HOH . G 5 HOH A 104 604 216 HOH HOH . G 5 HOH A 105 605 217 HOH HOH . G 5 HOH A 106 606 218 HOH HOH . G 5 HOH A 107 607 219 HOH HOH . G 5 HOH A 108 608 220 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A CO8 . . . F 4 -40.467 2.229 -10.86 1 64.84 ? N1A CO8 405 A 1 HETATM 2 C C2A CO8 . . . F 4 -39.767 2.975 -11.733 1 65 ? C2A CO8 405 A 1 HETATM 3 N N3A CO8 . . . F 4 -40.154 4.197 -12.148 1 66.15 ? N3A CO8 405 A 1 HETATM 4 C C4A CO8 . . . F 4 -41.3 4.763 -11.697 1 63.42 ? C4A CO8 405 A 1 HETATM 5 C C5A CO8 . . . F 4 -42.119 4.006 -10.749 1 63.24 ? C5A CO8 405 A 1 HETATM 6 C C6A CO8 . . . F 4 -41.634 2.666 -10.341 1 63.47 ? C6A CO8 405 A 1 HETATM 7 N N6A CO8 . . . F 4 -42.325 1.91 -9.464 1 59.05 ? N6A CO8 405 A 1 HETATM 8 N N7A CO8 . . . F 4 -43.176 4.782 -10.47 1 65.26 ? N7A CO8 405 A 1 HETATM 9 C C8A CO8 . . . F 4 -43.068 5.927 -11.176 1 60.9 ? C8A CO8 405 A 1 HETATM 10 N N9A CO8 . . . F 4 -41.944 5.914 -11.914 1 63.43 ? N9A CO8 405 A 1 HETATM 11 C C1B CO8 . . . F 4 -41.469 7.018 -12.79 1 57.83 ? C1B CO8 405 A 1 HETATM 12 C C2B CO8 . . . F 4 -42.439 7.342 -13.906 1 58.08 ? C2B CO8 405 A 1 HETATM 13 O O2B CO8 . . . F 4 -42.17 6.533 -15.044 1 57.27 ? O2B CO8 405 A 1 HETATM 14 C C3B CO8 . . . F 4 -42.164 8.817 -14.133 1 58.17 ? C3B CO8 405 A 1 HETATM 15 O O3B CO8 . . . F 4 -40.938 8.896 -14.854 1 64.76 ? O3B CO8 405 A 1 HETATM 16 P P3B CO8 . . . F 4 -40.396 10.173 -15.682 1 59.77 ? P3B CO8 405 A 1 HETATM 17 O O7A CO8 . . . F 4 -40.703 11.419 -14.886 1 59.15 ? O7A CO8 405 A 1 HETATM 18 O O8A CO8 . . . F 4 -38.922 9.824 -15.699 1 62.61 ? O8A CO8 405 A 1 HETATM 19 O O9A CO8 . . . F 4 -41.179 10.097 -16.975 1 56.58 ? O9A CO8 405 A 1 HETATM 20 C C4B CO8 . . . F 4 -41.873 9.35 -12.734 1 54.29 ? C4B CO8 405 A 1 HETATM 21 O O4B CO8 . . . F 4 -41.31 8.241 -12.024 1 56.26 ? O4B CO8 405 A 1 HETATM 22 C C5B CO8 . . . F 4 -43.11 9.896 -12.026 1 49.58 ? C5B CO8 405 A 1 HETATM 23 O O5B CO8 . . . F 4 -44.153 8.927 -12.13 1 46.9 ? O5B CO8 405 A 1 HETATM 24 P P1A CO8 . . . F 4 -45.657 9.129 -11.604 1 44.28 ? P1A CO8 405 A 1 HETATM 25 O O1A CO8 . . . F 4 -45.621 9.868 -10.278 1 43.07 ? O1A CO8 405 A 1 HETATM 26 O O2A CO8 . . . F 4 -46.531 9.629 -12.721 1 42.04 ? O2A CO8 405 A 1 HETATM 27 O O3A CO8 . . . F 4 -46.092 7.584 -11.318 1 46.58 ? O3A CO8 405 A 1 HETATM 28 P P2A CO8 . . . F 4 -46.818 6.577 -12.376 1 41.4 ? P2A CO8 405 A 1 HETATM 29 O O4A CO8 . . . F 4 -48.278 6.878 -12.509 1 41.56 ? O4A CO8 405 A 1 HETATM 30 O O5A CO8 . . . F 4 -45.992 6.587 -13.642 1 47.72 ? O5A CO8 405 A 1 HETATM 31 O O6A CO8 . . . F 4 -46.605 5.175 -11.621 1 42.07 ? O6A CO8 405 A 1 HETATM 32 C CBP CO8 . . . F 4 -47.285 3.386 -10.148 1 45.82 ? CBP CO8 405 A 1 HETATM 33 C CCP CO8 . . . F 4 -47.188 4.897 -10.342 1 41.93 ? CCP CO8 405 A 1 HETATM 34 C CDP CO8 . . . F 4 -48.053 2.751 -11.292 1 42.3 ? CDP CO8 405 A 1 HETATM 35 C CEP CO8 . . . F 4 -48.069 3.155 -8.878 1 48.04 ? CEP CO8 405 A 1 HETATM 36 C CAP CO8 . . . F 4 -45.868 2.771 -10.026 1 46.03 ? CAP CO8 405 A 1 HETATM 37 O OAP CO8 . . . F 4 -45.105 3.459 -9.022 1 45.85 ? OAP CO8 405 A 1 HETATM 38 C C9P CO8 . . . F 4 -45.85 1.294 -9.69 1 46.13 ? C9P CO8 405 A 1 HETATM 39 O O9P CO8 . . . F 4 -46.307 0.494 -10.481 1 48.63 ? O9P CO8 405 A 1 HETATM 40 N N8P CO8 . . . F 4 -45.315 0.926 -8.517 1 45.83 ? N8P CO8 405 A 1 HETATM 41 C C7P CO8 . . . F 4 -45.414 -0.413 -7.956 1 42.03 ? C7P CO8 405 A 1 HETATM 42 C C6P CO8 . . . F 4 -46.68 -0.549 -7.099 1 45.01 ? C6P CO8 405 A 1 HETATM 43 C C5P CO8 . . . F 4 -46.592 0.286 -5.846 1 42.96 ? C5P CO8 405 A 1 HETATM 44 O O5P CO8 . . . F 4 -45.6 0.955 -5.605 1 45.42 ? O5P CO8 405 A 1 HETATM 45 N N4P CO8 . . . F 4 -47.645 0.223 -5.041 1 44.19 ? N4P CO8 405 A 1 HETATM 46 C C3P CO8 . . . F 4 -47.714 0.973 -3.801 1 42.78 ? C3P CO8 405 A 1 HETATM 47 C C2P CO8 . . . F 4 -47.572 0.048 -2.618 1 45.06 ? C2P CO8 405 A 1 HETATM 48 S S1P CO8 . . . F 4 -48.124 0.837 -1.141 1 51.1 ? S1P CO8 405 A 1 HETATM 49 C C1' CO8 . . . F 4 -49.807 1.055 -1.413 1 49.95 ? C1' CO8 405 A 1 HETATM 50 O O1' CO8 . . . F 4 -50.416 0.343 -2.207 1 47.72 ? O1' CO8 405 A 1 HETATM 51 C C2' CO8 . . . F 4 -50.634 2.105 -0.678 1 45.29 ? C2' CO8 405 A 1 HETATM 52 C C3' CO8 . . . F 4 -51.191 3.209 -1.594 1 43.42 ? C3' CO8 405 A 1 HETATM 53 C C4' CO8 . . . F 4 -51.375 4.552 -0.859 1 41.23 ? C4' CO8 405 A 1 HETATM 54 C C5' CO8 . . . F 4 -52.155 5.595 -1.657 1 42.48 ? C5' CO8 405 A 1 HETATM 55 C C6' CO8 . . . F 4 -51.365 6.811 -2.136 1 43.3 ? C6' CO8 405 A 1 HETATM 56 C C7' CO8 . . . F 4 -52.109 7.528 -3.269 1 46.66 ? C7' CO8 405 A 1 HETATM 57 C C8' CO8 . . . F 4 -51.218 8.417 -4.115 1 44.13 ? C8' CO8 405 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 57 #