data_4Q39 # _model_server_result.job_id KDFq2qjT1G-z9AbzdBxTyg _model_server_result.datetime_utc '2025-01-11 05:58:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q39 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":903}' # _entry.id 4Q39 # _exptl.entry_id 4Q39 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Q39 _cell.length_a 48.5 _cell.length_b 142.72 _cell.length_c 167.31 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q39 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,P 1 1 B,K,L,M,N,O,Q 2 1 A,C,D,E,F,G,H,I,J,P 3 1,2 B,K,L,M,N,O,Q 4 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_454 -x-1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 -48.5 0 -83.655 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 207 A CYS 206 1_555 B SG CYS 207 B CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc1 A OH TYR 130 A TYR 129 1_555 E MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? metalc ? metalc2 A OE1 GLU 203 A GLU 202 1_555 D NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.056 ? metalc ? metalc3 A O THR 205 A THR 204 1_555 D NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc4 A O CYS 207 A CYS 206 1_555 D NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc5 A O PRO 228 A PRO 227 1_555 D NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc6 A OE1 GLU 246 A GLU 245 1_555 E MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc7 C O7N NAI . A NAI 901 1_555 E MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc8 D NA NA . A NA 902 1_555 P O HOH . A HOH 1013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.102 ? metalc ? metalc9 B OH TYR 130 B TYR 129 1_555 M MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc10 B OE1 GLU 203 B GLU 202 1_555 L NA NA . B NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.004 ? metalc ? metalc11 B O THR 205 B THR 204 1_555 L NA NA . B NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc12 B O CYS 207 B CYS 206 1_555 L NA NA . B NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc13 B O PRO 228 B PRO 227 1_555 L NA NA . B NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc14 B OE1 GLU 246 B GLU 245 1_555 M MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? metalc ? metalc15 B O GLU 246 B GLU 245 1_555 M MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc16 K O7N NAI . B NAI 901 1_555 M MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? metalc ? metalc17 L NA NA . B NA 902 1_555 Q O HOH . B HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.073 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4Q39 _atom_sites.fract_transf_matrix[1][1] 0.020619 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005977 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAI A 1 901 901 NAI NAI . D 3 NA A 1 902 902 NA NA . E 4 MG A 1 903 903 MG MG . F 5 PYL A 1 904 904 PYL PYH . G 6 GOL A 1 905 1 GOL GOL . H 6 GOL A 1 906 2 GOL GOL . I 7 EDO A 1 907 3 EDO EDO . J 8 PEG A 1 908 5 PEG PEG . K 2 NAI B 1 901 901 NAI NAI . L 3 NA B 1 902 902 NA NA . M 4 MG B 1 903 903 MG MG . N 5 PYL B 1 904 904 PYL PYH . O 7 EDO B 1 905 4 EDO EDO . P 9 HOH A 1 1001 1 HOH HOH . P 9 HOH A 2 1002 2 HOH HOH . P 9 HOH A 3 1003 3 HOH HOH . P 9 HOH A 4 1004 4 HOH HOH . P 9 HOH A 5 1005 5 HOH HOH . P 9 HOH A 6 1006 6 HOH HOH . P 9 HOH A 7 1007 7 HOH HOH . P 9 HOH A 8 1008 8 HOH HOH . P 9 HOH A 9 1009 9 HOH HOH . P 9 HOH A 10 1010 11 HOH HOH . P 9 HOH A 11 1011 14 HOH HOH . P 9 HOH A 12 1012 15 HOH HOH . P 9 HOH A 13 1013 16 HOH HOH . P 9 HOH A 14 1014 17 HOH HOH . P 9 HOH A 15 1015 18 HOH HOH . P 9 HOH A 16 1016 19 HOH HOH . P 9 HOH A 17 1017 20 HOH HOH . P 9 HOH A 18 1018 22 HOH HOH . P 9 HOH A 19 1019 23 HOH HOH . P 9 HOH A 20 1020 25 HOH HOH . P 9 HOH A 21 1021 27 HOH HOH . P 9 HOH A 22 1022 28 HOH HOH . P 9 HOH A 23 1023 30 HOH HOH . P 9 HOH A 24 1024 31 HOH HOH . P 9 HOH A 25 1025 32 HOH HOH . P 9 HOH A 26 1026 35 HOH HOH . P 9 HOH A 27 1027 36 HOH HOH . P 9 HOH A 28 1028 37 HOH HOH . P 9 HOH A 29 1029 38 HOH HOH . P 9 HOH A 30 1030 40 HOH HOH . P 9 HOH A 31 1031 42 HOH HOH . P 9 HOH A 32 1032 43 HOH HOH . P 9 HOH A 33 1033 44 HOH HOH . P 9 HOH A 34 1034 45 HOH HOH . P 9 HOH A 35 1035 46 HOH HOH . P 9 HOH A 36 1036 48 HOH HOH . P 9 HOH A 37 1037 49 HOH HOH . P 9 HOH A 38 1038 50 HOH HOH . P 9 HOH A 39 1039 51 HOH HOH . P 9 HOH A 40 1040 52 HOH HOH . P 9 HOH A 41 1041 53 HOH HOH . P 9 HOH A 42 1042 54 HOH HOH . P 9 HOH A 43 1043 55 HOH HOH . P 9 HOH A 44 1044 57 HOH HOH . P 9 HOH A 45 1045 58 HOH HOH . P 9 HOH A 46 1046 60 HOH HOH . P 9 HOH A 47 1047 63 HOH HOH . P 9 HOH A 48 1048 64 HOH HOH . P 9 HOH A 49 1049 65 HOH HOH . P 9 HOH A 50 1050 66 HOH HOH . P 9 HOH A 51 1051 67 HOH HOH . P 9 HOH A 52 1052 68 HOH HOH . P 9 HOH A 53 1053 69 HOH HOH . P 9 HOH A 54 1054 70 HOH HOH . P 9 HOH A 55 1055 71 HOH HOH . P 9 HOH A 56 1056 72 HOH HOH . P 9 HOH A 57 1057 73 HOH HOH . P 9 HOH A 58 1058 74 HOH HOH . P 9 HOH A 59 1059 76 HOH HOH . P 9 HOH A 60 1060 79 HOH HOH . P 9 HOH A 61 1061 80 HOH HOH . P 9 HOH A 62 1062 81 HOH HOH . P 9 HOH A 63 1063 82 HOH HOH . P 9 HOH A 64 1064 83 HOH HOH . P 9 HOH A 65 1065 84 HOH HOH . P 9 HOH A 66 1066 87 HOH HOH . P 9 HOH A 67 1067 88 HOH HOH . P 9 HOH A 68 1068 89 HOH HOH . P 9 HOH A 69 1069 90 HOH HOH . P 9 HOH A 70 1070 92 HOH HOH . P 9 HOH A 71 1071 93 HOH HOH . P 9 HOH A 72 1072 95 HOH HOH . P 9 HOH A 73 1073 97 HOH HOH . P 9 HOH A 74 1074 99 HOH HOH . P 9 HOH A 75 1075 100 HOH HOH . P 9 HOH A 76 1076 101 HOH HOH . P 9 HOH A 77 1077 102 HOH HOH . P 9 HOH A 78 1078 105 HOH HOH . P 9 HOH A 79 1079 106 HOH HOH . P 9 HOH A 80 1080 110 HOH HOH . P 9 HOH A 81 1081 111 HOH HOH . P 9 HOH A 82 1082 112 HOH HOH . P 9 HOH A 83 1083 113 HOH HOH . P 9 HOH A 84 1084 114 HOH HOH . P 9 HOH A 85 1085 115 HOH HOH . P 9 HOH A 86 1086 116 HOH HOH . P 9 HOH A 87 1087 117 HOH HOH . P 9 HOH A 88 1088 118 HOH HOH . P 9 HOH A 89 1089 119 HOH HOH . P 9 HOH A 90 1090 122 HOH HOH . P 9 HOH A 91 1091 123 HOH HOH . P 9 HOH A 92 1092 125 HOH HOH . P 9 HOH A 93 1093 128 HOH HOH . P 9 HOH A 94 1094 132 HOH HOH . P 9 HOH A 95 1095 133 HOH HOH . P 9 HOH A 96 1096 134 HOH HOH . P 9 HOH A 97 1097 135 HOH HOH . P 9 HOH A 98 1098 136 HOH HOH . P 9 HOH A 99 1099 137 HOH HOH . P 9 HOH A 100 1100 138 HOH HOH . P 9 HOH A 101 1101 139 HOH HOH . P 9 HOH A 102 1102 142 HOH HOH . P 9 HOH A 103 1103 144 HOH HOH . P 9 HOH A 104 1104 153 HOH HOH . P 9 HOH A 105 1105 156 HOH HOH . P 9 HOH A 106 1106 158 HOH HOH . P 9 HOH A 107 1107 164 HOH HOH . P 9 HOH A 108 1108 165 HOH HOH . P 9 HOH A 109 1109 168 HOH HOH . P 9 HOH A 110 1110 169 HOH HOH . P 9 HOH A 111 1111 170 HOH HOH . P 9 HOH A 112 1112 171 HOH HOH . P 9 HOH A 113 1113 172 HOH HOH . P 9 HOH A 114 1114 173 HOH HOH . P 9 HOH A 115 1115 176 HOH HOH . P 9 HOH A 116 1116 177 HOH HOH . P 9 HOH A 117 1117 178 HOH HOH . P 9 HOH A 118 1118 179 HOH HOH . P 9 HOH A 119 1119 180 HOH HOH . P 9 HOH A 120 1120 181 HOH HOH . P 9 HOH A 121 1121 182 HOH HOH . P 9 HOH A 122 1122 187 HOH HOH . P 9 HOH A 123 1123 188 HOH HOH . P 9 HOH A 124 1124 189 HOH HOH . P 9 HOH A 125 1125 191 HOH HOH . P 9 HOH A 126 1126 193 HOH HOH . P 9 HOH A 127 1127 196 HOH HOH . P 9 HOH A 128 1128 198 HOH HOH . P 9 HOH A 129 1129 200 HOH HOH . P 9 HOH A 130 1130 202 HOH HOH . P 9 HOH A 131 1131 205 HOH HOH . P 9 HOH A 132 1132 212 HOH HOH . P 9 HOH A 133 1133 215 HOH HOH . P 9 HOH A 134 1134 216 HOH HOH . P 9 HOH A 135 1135 217 HOH HOH . P 9 HOH A 136 1136 218 HOH HOH . P 9 HOH A 137 1137 220 HOH HOH . P 9 HOH A 138 1138 222 HOH HOH . P 9 HOH A 139 1139 223 HOH HOH . P 9 HOH A 140 1140 227 HOH HOH . P 9 HOH A 141 1141 229 HOH HOH . P 9 HOH A 142 1142 230 HOH HOH . P 9 HOH A 143 1143 232 HOH HOH . P 9 HOH A 144 1144 233 HOH HOH . P 9 HOH A 145 1145 234 HOH HOH . P 9 HOH A 146 1146 235 HOH HOH . P 9 HOH A 147 1147 237 HOH HOH . P 9 HOH A 148 1148 238 HOH HOH . P 9 HOH A 149 1149 239 HOH HOH . P 9 HOH A 150 1150 240 HOH HOH . P 9 HOH A 151 1151 243 HOH HOH . P 9 HOH A 152 1152 244 HOH HOH . P 9 HOH A 153 1153 245 HOH HOH . P 9 HOH A 154 1154 246 HOH HOH . P 9 HOH A 155 1155 248 HOH HOH . P 9 HOH A 156 1156 250 HOH HOH . Q 9 HOH B 1 1001 10 HOH HOH . Q 9 HOH B 2 1002 12 HOH HOH . Q 9 HOH B 3 1003 13 HOH HOH . Q 9 HOH B 4 1004 21 HOH HOH . Q 9 HOH B 5 1005 33 HOH HOH . Q 9 HOH B 6 1006 34 HOH HOH . Q 9 HOH B 7 1007 47 HOH HOH . Q 9 HOH B 8 1008 56 HOH HOH . Q 9 HOH B 9 1009 59 HOH HOH . Q 9 HOH B 10 1010 61 HOH HOH . Q 9 HOH B 11 1011 62 HOH HOH . Q 9 HOH B 12 1012 75 HOH HOH . Q 9 HOH B 13 1013 77 HOH HOH . Q 9 HOH B 14 1014 78 HOH HOH . Q 9 HOH B 15 1015 91 HOH HOH . Q 9 HOH B 16 1016 96 HOH HOH . Q 9 HOH B 17 1017 98 HOH HOH . Q 9 HOH B 18 1018 108 HOH HOH . Q 9 HOH B 19 1019 121 HOH HOH . Q 9 HOH B 20 1020 124 HOH HOH . Q 9 HOH B 21 1021 126 HOH HOH . Q 9 HOH B 22 1022 127 HOH HOH . Q 9 HOH B 23 1023 130 HOH HOH . Q 9 HOH B 24 1024 131 HOH HOH . Q 9 HOH B 25 1025 141 HOH HOH . Q 9 HOH B 26 1026 143 HOH HOH . Q 9 HOH B 27 1027 146 HOH HOH . Q 9 HOH B 28 1028 147 HOH HOH . Q 9 HOH B 29 1029 151 HOH HOH . Q 9 HOH B 30 1030 152 HOH HOH . Q 9 HOH B 31 1031 154 HOH HOH . Q 9 HOH B 32 1032 155 HOH HOH . Q 9 HOH B 33 1033 157 HOH HOH . Q 9 HOH B 34 1034 161 HOH HOH . Q 9 HOH B 35 1035 166 HOH HOH . Q 9 HOH B 36 1036 167 HOH HOH . Q 9 HOH B 37 1037 174 HOH HOH . Q 9 HOH B 38 1038 184 HOH HOH . Q 9 HOH B 39 1039 185 HOH HOH . Q 9 HOH B 40 1040 192 HOH HOH . Q 9 HOH B 41 1041 199 HOH HOH . Q 9 HOH B 42 1042 219 HOH HOH . Q 9 HOH B 43 1043 221 HOH HOH . Q 9 HOH B 44 1044 225 HOH HOH . Q 9 HOH B 45 1045 226 HOH HOH . Q 9 HOH B 46 1046 228 HOH HOH . Q 9 HOH B 47 1047 241 HOH HOH . Q 9 HOH B 48 1048 242 HOH HOH . Q 9 HOH B 49 1049 247 HOH HOH . Q 9 HOH B 50 1050 249 HOH HOH . Q 9 HOH B 51 1051 251 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 4 _atom_site.Cartn_x -21.416 _atom_site.Cartn_y 33.765 _atom_site.Cartn_z -19.167 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 903 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #