data_4Q3E # _model_server_result.job_id aCoSuL7vo2JQEsa6TrFC6g _model_server_result.datetime_utc '2024-11-16 05:42:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q3e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":906}' # _entry.id 4Q3E # _exptl.entry_id 4Q3E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Q3E _cell.length_a 79.08 _cell.length_b 210.46 _cell.length_c 77.64 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q3E _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,P 1 1 B,J,K,L,M,N,O,Q 2 1 A,C,D,E,F,G,H,I,P 3 1 B,J,K,L,M,N,O,Q 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_444 -x-1/2,-y-1/2,z-1/2 -1 0 0 0 -1 0 0 0 1 -39.54 -105.23 -38.82 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 207 B CYS 206 1_555 B SG CYS 207 B CYS 206 3_456 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc1 A OH TYR 130 A TYR 129 1_555 E MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc2 A OE1 GLU 203 A GLU 202 1_555 D NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? metalc ? metalc3 A O THR 205 A THR 204 1_555 D NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc4 A O CYS 207 A CYS 206 1_555 D NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc5 A O PRO 228 A PRO 227 1_555 D NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc6 A OE2 GLU 246 A GLU 245 1_555 E MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc7 A O GLU 246 A GLU 245 1_555 E MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc8 C O7N NAD . A NAD 901 1_555 E MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc9 D NA NA . A NA 902 1_555 P O HOH . A HOH 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.144 ? metalc ? metalc10 B OH TYR 130 B TYR 129 1_555 L MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? metalc ? metalc11 B OE1 GLU 203 B GLU 202 1_555 K NA NA . B NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc12 B OE2 GLU 203 B GLU 202 1_555 K NA NA . B NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.151 ? metalc ? metalc13 B O THR 205 B THR 204 1_555 K NA NA . B NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc14 B O CYS 207 B CYS 206 1_555 K NA NA . B NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc15 B O PRO 228 B PRO 227 1_555 K NA NA . B NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.873 ? metalc ? metalc16 B OE2 GLU 246 B GLU 245 1_555 L MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc17 B O GLU 246 B GLU 245 1_555 L MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? metalc ? metalc18 J O7N NAD . B NAD 901 1_555 L MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc19 K NA NA . B NA 902 1_555 Q O HOH . B HOH 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 124 n n C1 C2 EDO sing 125 n n C1 H11 EDO sing 126 n n C1 H12 EDO sing 127 n n O1 HO1 EDO sing 128 n n C2 O2 EDO sing 129 n n C2 H21 EDO sing 130 n n C2 H22 EDO sing 131 n n O2 HO2 EDO sing 132 n n # _atom_sites.entry_id 4Q3E _atom_sites.fract_transf_matrix[1][1] 0.012645 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004751 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 901 901 NAD NAD . D 3 NA A 1 902 902 NA NA . E 4 MG A 1 903 903 MG MG . F 5 2YJ A 1 904 904 2YJ LIG . G 6 EDO A 1 905 2 EDO EDO . H 6 EDO A 1 906 3 EDO EDO . I 7 SO4 A 1 907 5 SO4 SO4 . J 2 NAD B 1 901 901 NAD NAD . K 3 NA B 1 902 902 NA NA . L 4 MG B 1 903 903 MG MG . M 5 2YJ B 1 904 904 2YJ LIG . N 8 GOL B 1 905 1 GOL GOL . O 6 EDO B 1 906 4 EDO EDO . P 9 HOH A 1 1001 1 HOH HOH . P 9 HOH A 2 1002 2 HOH HOH . P 9 HOH A 3 1003 3 HOH HOH . P 9 HOH A 4 1004 9 HOH HOH . P 9 HOH A 5 1005 10 HOH HOH . P 9 HOH A 6 1006 11 HOH HOH . P 9 HOH A 7 1007 15 HOH HOH . P 9 HOH A 8 1008 16 HOH HOH . P 9 HOH A 9 1009 19 HOH HOH . P 9 HOH A 10 1010 21 HOH HOH . P 9 HOH A 11 1011 22 HOH HOH . P 9 HOH A 12 1012 25 HOH HOH . P 9 HOH A 13 1013 28 HOH HOH . P 9 HOH A 14 1014 30 HOH HOH . P 9 HOH A 15 1015 31 HOH HOH . P 9 HOH A 16 1016 32 HOH HOH . P 9 HOH A 17 1017 33 HOH HOH . P 9 HOH A 18 1018 35 HOH HOH . P 9 HOH A 19 1019 38 HOH HOH . P 9 HOH A 20 1020 43 HOH HOH . P 9 HOH A 21 1021 44 HOH HOH . P 9 HOH A 22 1022 46 HOH HOH . P 9 HOH A 23 1023 49 HOH HOH . P 9 HOH A 24 1024 50 HOH HOH . P 9 HOH A 25 1025 52 HOH HOH . P 9 HOH A 26 1026 54 HOH HOH . P 9 HOH A 27 1027 55 HOH HOH . P 9 HOH A 28 1028 56 HOH HOH . P 9 HOH A 29 1029 60 HOH HOH . P 9 HOH A 30 1030 61 HOH HOH . P 9 HOH A 31 1031 63 HOH HOH . P 9 HOH A 32 1032 69 HOH HOH . P 9 HOH A 33 1033 70 HOH HOH . P 9 HOH A 34 1034 71 HOH HOH . P 9 HOH A 35 1035 73 HOH HOH . P 9 HOH A 36 1036 77 HOH HOH . P 9 HOH A 37 1037 78 HOH HOH . P 9 HOH A 38 1038 79 HOH HOH . P 9 HOH A 39 1039 81 HOH HOH . P 9 HOH A 40 1040 86 HOH HOH . P 9 HOH A 41 1041 88 HOH HOH . P 9 HOH A 42 1042 90 HOH HOH . P 9 HOH A 43 1043 92 HOH HOH . P 9 HOH A 44 1044 94 HOH HOH . P 9 HOH A 45 1045 98 HOH HOH . P 9 HOH A 46 1046 101 HOH HOH . P 9 HOH A 47 1047 103 HOH HOH . P 9 HOH A 48 1048 104 HOH HOH . P 9 HOH A 49 1049 105 HOH HOH . P 9 HOH A 50 1050 106 HOH HOH . P 9 HOH A 51 1051 107 HOH HOH . P 9 HOH A 52 1052 110 HOH HOH . P 9 HOH A 53 1053 111 HOH HOH . P 9 HOH A 54 1054 112 HOH HOH . P 9 HOH A 55 1055 113 HOH HOH . P 9 HOH A 56 1056 115 HOH HOH . P 9 HOH A 57 1057 117 HOH HOH . P 9 HOH A 58 1058 123 HOH HOH . P 9 HOH A 59 1059 124 HOH HOH . P 9 HOH A 60 1060 125 HOH HOH . P 9 HOH A 61 1061 126 HOH HOH . P 9 HOH A 62 1062 127 HOH HOH . P 9 HOH A 63 1063 128 HOH HOH . P 9 HOH A 64 1064 131 HOH HOH . P 9 HOH A 65 1065 132 HOH HOH . P 9 HOH A 66 1066 134 HOH HOH . P 9 HOH A 67 1067 140 HOH HOH . P 9 HOH A 68 1068 143 HOH HOH . P 9 HOH A 69 1069 144 HOH HOH . P 9 HOH A 70 1070 145 HOH HOH . P 9 HOH A 71 1071 146 HOH HOH . P 9 HOH A 72 1072 151 HOH HOH . P 9 HOH A 73 1073 154 HOH HOH . P 9 HOH A 74 1074 156 HOH HOH . P 9 HOH A 75 1075 160 HOH HOH . P 9 HOH A 76 1076 166 HOH HOH . P 9 HOH A 77 1077 167 HOH HOH . P 9 HOH A 78 1078 168 HOH HOH . P 9 HOH A 79 1079 169 HOH HOH . P 9 HOH A 80 1080 171 HOH HOH . P 9 HOH A 81 1081 173 HOH HOH . P 9 HOH A 82 1082 177 HOH HOH . P 9 HOH A 83 1083 184 HOH HOH . P 9 HOH A 84 1084 191 HOH HOH . P 9 HOH A 85 1085 194 HOH HOH . P 9 HOH A 86 1086 198 HOH HOH . P 9 HOH A 87 1087 202 HOH HOH . P 9 HOH A 88 1088 207 HOH HOH . P 9 HOH A 89 1089 208 HOH HOH . P 9 HOH A 90 1090 209 HOH HOH . P 9 HOH A 91 1091 210 HOH HOH . P 9 HOH A 92 1092 215 HOH HOH . P 9 HOH A 93 1093 222 HOH HOH . P 9 HOH A 94 1094 228 HOH HOH . P 9 HOH A 95 1095 229 HOH HOH . P 9 HOH A 96 1096 232 HOH HOH . P 9 HOH A 97 1097 235 HOH HOH . P 9 HOH A 98 1098 237 HOH HOH . P 9 HOH A 99 1099 240 HOH HOH . P 9 HOH A 100 1100 243 HOH HOH . P 9 HOH A 101 1101 255 HOH HOH . P 9 HOH A 102 1102 256 HOH HOH . P 9 HOH A 103 1103 257 HOH HOH . P 9 HOH A 104 1104 258 HOH HOH . P 9 HOH A 105 1105 265 HOH HOH . P 9 HOH A 106 1106 266 HOH HOH . Q 9 HOH B 1 1001 6 HOH HOH . Q 9 HOH B 2 1002 7 HOH HOH . Q 9 HOH B 3 1003 8 HOH HOH . Q 9 HOH B 4 1004 12 HOH HOH . Q 9 HOH B 5 1005 14 HOH HOH . Q 9 HOH B 6 1006 17 HOH HOH . Q 9 HOH B 7 1007 20 HOH HOH . Q 9 HOH B 8 1008 23 HOH HOH . Q 9 HOH B 9 1009 24 HOH HOH . Q 9 HOH B 10 1010 26 HOH HOH . Q 9 HOH B 11 1011 27 HOH HOH . Q 9 HOH B 12 1012 34 HOH HOH . Q 9 HOH B 13 1013 37 HOH HOH . Q 9 HOH B 14 1014 41 HOH HOH . Q 9 HOH B 15 1015 42 HOH HOH . Q 9 HOH B 16 1016 45 HOH HOH . Q 9 HOH B 17 1017 47 HOH HOH . Q 9 HOH B 18 1018 48 HOH HOH . Q 9 HOH B 19 1019 51 HOH HOH . Q 9 HOH B 20 1020 53 HOH HOH . Q 9 HOH B 21 1021 57 HOH HOH . Q 9 HOH B 22 1022 58 HOH HOH . Q 9 HOH B 23 1023 59 HOH HOH . Q 9 HOH B 24 1024 65 HOH HOH . Q 9 HOH B 25 1025 66 HOH HOH . Q 9 HOH B 26 1026 67 HOH HOH . Q 9 HOH B 27 1027 68 HOH HOH . Q 9 HOH B 28 1028 75 HOH HOH . Q 9 HOH B 29 1029 76 HOH HOH . Q 9 HOH B 30 1030 82 HOH HOH . Q 9 HOH B 31 1031 83 HOH HOH . Q 9 HOH B 32 1032 84 HOH HOH . Q 9 HOH B 33 1033 85 HOH HOH . Q 9 HOH B 34 1034 87 HOH HOH . Q 9 HOH B 35 1035 89 HOH HOH . Q 9 HOH B 36 1036 93 HOH HOH . Q 9 HOH B 37 1037 96 HOH HOH . Q 9 HOH B 38 1038 97 HOH HOH . Q 9 HOH B 39 1039 102 HOH HOH . Q 9 HOH B 40 1040 108 HOH HOH . Q 9 HOH B 41 1041 109 HOH HOH . Q 9 HOH B 42 1042 114 HOH HOH . Q 9 HOH B 43 1043 116 HOH HOH . Q 9 HOH B 44 1044 121 HOH HOH . Q 9 HOH B 45 1045 129 HOH HOH . Q 9 HOH B 46 1046 130 HOH HOH . Q 9 HOH B 47 1047 136 HOH HOH . Q 9 HOH B 48 1048 137 HOH HOH . Q 9 HOH B 49 1049 138 HOH HOH . Q 9 HOH B 50 1050 141 HOH HOH . Q 9 HOH B 51 1051 142 HOH HOH . Q 9 HOH B 52 1052 150 HOH HOH . Q 9 HOH B 53 1053 153 HOH HOH . Q 9 HOH B 54 1054 155 HOH HOH . Q 9 HOH B 55 1055 157 HOH HOH . Q 9 HOH B 56 1056 158 HOH HOH . Q 9 HOH B 57 1057 161 HOH HOH . Q 9 HOH B 58 1058 170 HOH HOH . Q 9 HOH B 59 1059 178 HOH HOH . Q 9 HOH B 60 1060 179 HOH HOH . Q 9 HOH B 61 1061 181 HOH HOH . Q 9 HOH B 62 1062 182 HOH HOH . Q 9 HOH B 63 1063 183 HOH HOH . Q 9 HOH B 64 1064 186 HOH HOH . Q 9 HOH B 65 1065 188 HOH HOH . Q 9 HOH B 66 1066 193 HOH HOH . Q 9 HOH B 67 1067 197 HOH HOH . Q 9 HOH B 68 1068 206 HOH HOH . Q 9 HOH B 69 1069 216 HOH HOH . Q 9 HOH B 70 1070 234 HOH HOH . Q 9 HOH B 71 1071 236 HOH HOH . Q 9 HOH B 72 1072 239 HOH HOH . Q 9 HOH B 73 1073 241 HOH HOH . Q 9 HOH B 74 1074 242 HOH HOH . Q 9 HOH B 75 1075 244 HOH HOH . Q 9 HOH B 76 1076 248 HOH HOH . Q 9 HOH B 77 1077 249 HOH HOH . Q 9 HOH B 78 1078 252 HOH HOH . Q 9 HOH B 79 1079 253 HOH HOH . Q 9 HOH B 80 1080 259 HOH HOH . Q 9 HOH B 81 1081 260 HOH HOH . Q 9 HOH B 82 1082 261 HOH HOH . Q 9 HOH B 83 1083 262 HOH HOH . Q 9 HOH B 84 1084 263 HOH HOH . Q 9 HOH B 85 1085 264 HOH HOH . Q 9 HOH B 86 1086 267 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . O 6 -36.826 -47.508 54.234 1 68.37 ? C1 EDO 906 B 1 HETATM 2 O O1 EDO . . . O 6 -37.318 -48.22 55.375 1 70.6 ? O1 EDO 906 B 1 HETATM 3 C C2 EDO . . . O 6 -35.768 -48.352 53.538 1 65.73 ? C2 EDO 906 B 1 HETATM 4 O O2 EDO . . . O 6 -34.479 -48.064 54.081 1 63 ? O2 EDO 906 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #