data_4Q4A # _model_server_result.job_id WDXgdjosvvfStVOkrLc9DA _model_server_result.datetime_utc '2024-12-13 15:39:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q4a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4Q4A # _exptl.entry_id 4Q4A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.92 _cell.angle_gamma 90 _cell.entry_id 4Q4A _cell.length_a 216.33 _cell.length_b 84.31 _cell.length_c 115.78 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q4A _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 383 A SER 373 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc2 A OE1 GLN 424 A GLN 414 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc3 C O2B ANP . A ANP 601 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc4 C O2G ANP . A ANP 601 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? metalc ? metalc5 C O1G ANP . A ANP 601 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4Q4A _atom_sites.fract_transf_matrix[1][1] 0.004623 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000155 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP A 1 601 1 ANP ANP . D 4 MG A 1 602 1 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 -81.124 16.493 48.843 1 109.8 ? PG ANP 601 A 1 HETATM 2 O O1G ANP . . . C 3 -80.205 15.301 48.938 1 110.22 ? O1G ANP 601 A 1 HETATM 3 O O2G ANP . . . C 3 -82.021 16.651 50.049 1 117.17 ? O2G ANP 601 A 1 HETATM 4 O O3G ANP . . . C 3 -81.837 16.61 47.516 1 101.24 ? O3G ANP 601 A 1 HETATM 5 P PB ANP . . . C 3 -80.66 19.466 49.344 1 101.18 ? PB ANP 601 A 1 HETATM 6 O O1B ANP . . . C 3 -82.158 19.488 49.156 1 107.35 ? O1B ANP 601 A 1 HETATM 7 O O2B ANP . . . C 3 -80.105 19.774 50.717 1 85.36 ? O2B ANP 601 A 1 HETATM 8 N N3B ANP . . . C 3 -80.064 17.883 48.881 1 91.21 ? N3B ANP 601 A 1 HETATM 9 P PA ANP . . . C 3 -78.645 21.282 48.577 1 101.64 ? PA ANP 601 A 1 HETATM 10 O O1A ANP . . . C 3 -78.765 22.15 49.807 1 96.97 ? O1A ANP 601 A 1 HETATM 11 O O2A ANP . . . C 3 -77.561 20.232 48.503 1 107.66 ? O2A ANP 601 A 1 HETATM 12 O O3A ANP . . . C 3 -80.039 20.523 48.288 1 118.22 ? O3A ANP 601 A 1 HETATM 13 O O5' ANP . . . C 3 -78.429 22.206 47.27 1 124.28 ? O5' ANP 601 A 1 HETATM 14 C C5' ANP . . . C 3 -79.196 23.372 46.977 1 123.07 ? C5' ANP 601 A 1 HETATM 15 C C4' ANP . . . C 3 -78.924 23.783 45.532 1 119.69 ? C4' ANP 601 A 1 HETATM 16 O O4' ANP . . . C 3 -77.554 24.159 45.364 1 119.69 ? O4' ANP 601 A 1 HETATM 17 C C3' ANP . . . C 3 -79.197 22.656 44.55 1 120.37 ? C3' ANP 601 A 1 HETATM 18 O O3' ANP . . . C 3 -79.894 23.168 43.412 1 120.86 ? O3' ANP 601 A 1 HETATM 19 C C2' ANP . . . C 3 -77.837 22.17 44.106 1 120.42 ? C2' ANP 601 A 1 HETATM 20 O O2' ANP . . . C 3 -77.865 21.898 42.706 1 121.05 ? O2' ANP 601 A 1 HETATM 21 C C1' ANP . . . C 3 -76.898 23.326 44.399 1 120.14 ? C1' ANP 601 A 1 HETATM 22 N N9 ANP . . . C 3 -75.611 22.858 44.972 1 118.65 ? N9 ANP 601 A 1 HETATM 23 C C8 ANP . . . C 3 -75.458 22.008 46.004 1 118.31 ? C8 ANP 601 A 1 HETATM 24 N N7 ANP . . . C 3 -74.144 21.811 46.289 1 116.02 ? N7 ANP 601 A 1 HETATM 25 C C5 ANP . . . C 3 -73.43 22.556 45.426 1 115.4 ? C5 ANP 601 A 1 HETATM 26 C C6 ANP . . . C 3 -71.994 22.814 45.17 1 113.98 ? C6 ANP 601 A 1 HETATM 27 N N6 ANP . . . C 3 -71.028 22.223 45.911 1 116.52 ? N6 ANP 601 A 1 HETATM 28 N N1 ANP . . . C 3 -71.678 23.663 44.172 1 113.66 ? N1 ANP 601 A 1 HETATM 29 C C2 ANP . . . C 3 -72.625 24.259 43.425 1 116.41 ? C2 ANP 601 A 1 HETATM 30 N N3 ANP . . . C 3 -73.945 24.076 43.598 1 116.51 ? N3 ANP 601 A 1 HETATM 31 C C4 ANP . . . C 3 -74.402 23.25 44.567 1 117.35 ? C4 ANP 601 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #