data_4Q4Z # _model_server_result.job_id plNUC8pHD_lzhXCIYUYHpQ _model_server_result.datetime_utc '2024-11-24 13:29:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q4z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":2004}' # _entry.id 4Q4Z # _exptl.entry_id 4Q4Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.96 _cell.angle_gamma 90 _cell.entry_id 4Q4Z _cell.length_a 184.487 _cell.length_b 102.159 _cell.length_c 294.719 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q4Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 L N N ? 10 M N N ? 10 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 I O3' ATP . C ATP 1201 1_555 L MG MG . D MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc2 D SG CYS 58 D CYS 58 1_555 K ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc3 D SG CYS 60 D CYS 60 1_555 K ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc4 D SG CYS 73 D CYS 73 1_555 K ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc5 D SG CYS 76 D CYS 76 1_555 K ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc6 D OD1 ASP 739 D ASP 739 1_555 L MG MG . D MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc7 D OD1 ASP 741 D ASP 741 1_555 L MG MG . D MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc8 D OD2 ASP 741 D ASP 741 1_555 L MG MG . D MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc9 D OD1 ASP 743 D ASP 743 1_555 L MG MG . D MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc10 D O LYS 840 D LYS 840 1_555 N MG MG . D MG 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc11 D SG CYS 1112 D CYS 1112 1_555 J ZN ZN . D ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc12 D SG CYS 1194 D CYS 1194 1_555 J ZN ZN . D ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc13 D SG CYS 1201 D CYS 1201 1_555 J ZN ZN . D ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc14 D SG CYS 1204 D CYS 1204 1_555 J ZN ZN . D ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc15 L MG MG . D MG 2003 1_555 S O HOH . D HOH 2112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc16 L MG MG . D MG 2003 1_555 S O HOH . D HOH 2123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? hydrog WATSON-CRICK hydrog1 G N3 DT 3 G DT 3 1_555 H N1 DA 25 H DA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 G O4 DT 3 G DT 3 1_555 H N6 DA 25 H DA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog3 G N1 DG 4 G DG 4 1_555 H N3 DC 24 H DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 G N3 DC 5 G DC 5 1_555 H N1 DG 23 H DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 G N4 DC 5 G DC 5 1_555 H O6 DG 23 H DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 G O2 DC 5 G DC 5 1_555 H N2 DG 23 H DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 G N3 DT 7 G DT 7 1_555 H N1 DA 21 H DA 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 G O4 DT 7 G DT 7 1_555 H N6 DA 21 H DA 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 G N3 DC 8 G DC 8 1_555 H N1 DG 20 H DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 G N4 DC 8 G DC 8 1_555 H O6 DG 20 H DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 G O2 DC 8 G DC 8 1_555 H N2 DG 20 H DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 G N3 DC 9 G DC 9 1_555 H N1 DG 19 H DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 G N4 DC 9 G DC 9 1_555 H O6 DG 19 H DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 G O2 DC 9 G DC 9 1_555 H N2 DG 19 H DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 G N1 DG 10 G DG 10 1_555 H N3 DC 18 H DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 G N2 DG 10 G DG 10 1_555 H O2 DC 18 H DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 G O6 DG 10 G DG 10 1_555 H N4 DC 18 H DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 G N3 DT 11 G DT 11 1_555 H N1 DA 17 H DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 G O4 DT 11 G DT 11 1_555 H N6 DA 17 H DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 G N1 DG 12 G DG 12 1_555 H N3 DC 16 H DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 G N2 DG 12 G DG 12 1_555 H O2 DC 16 H DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 G O6 DG 12 G DG 12 1_555 H N4 DC 16 H DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 G N1 DA 13 G DA 13 1_555 H N3 DT 15 H DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 G N6 DA 13 G DA 13 1_555 H O4 DT 15 H DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4Q4Z _atom_sites.fract_transf_matrix[1][1] 0.00542 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000855 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 8 ATP C 1 1201 1 ATP ATP . J 9 ZN D 1 2001 2001 ZN ZN . K 9 ZN D 1 2002 2002 ZN ZN . L 10 MG D 1 2003 2003 MG MG . M 10 MG D 1 2004 2004 MG MG . N 10 MG D 1 2005 2005 MG MG . O 11 2TM D 1 2006 2 2TM 2TM . P 12 HOH A 1 401 13 HOH HOH . P 12 HOH A 2 402 21 HOH HOH . P 12 HOH A 3 403 32 HOH HOH . P 12 HOH A 4 404 47 HOH HOH . Q 12 HOH B 1 401 4 HOH HOH . R 12 HOH C 1 1301 1 HOH HOH . R 12 HOH C 2 1302 3 HOH HOH . R 12 HOH C 3 1303 5 HOH HOH . R 12 HOH C 4 1304 6 HOH HOH . R 12 HOH C 5 1305 10 HOH HOH . R 12 HOH C 6 1306 11 HOH HOH . R 12 HOH C 7 1307 15 HOH HOH . R 12 HOH C 8 1308 16 HOH HOH . R 12 HOH C 9 1309 17 HOH HOH . R 12 HOH C 10 1310 18 HOH HOH . R 12 HOH C 11 1311 19 HOH HOH . R 12 HOH C 12 1312 22 HOH HOH . R 12 HOH C 13 1313 25 HOH HOH . R 12 HOH C 14 1314 29 HOH HOH . R 12 HOH C 15 1315 30 HOH HOH . R 12 HOH C 16 1316 34 HOH HOH . R 12 HOH C 17 1317 42 HOH HOH . R 12 HOH C 18 1318 44 HOH HOH . R 12 HOH C 19 1319 46 HOH HOH . R 12 HOH C 20 1320 48 HOH HOH . R 12 HOH C 21 1321 50 HOH HOH . R 12 HOH C 22 1322 56 HOH HOH . S 12 HOH D 1 2101 2 HOH HOH . S 12 HOH D 2 2102 7 HOH HOH . S 12 HOH D 3 2103 8 HOH HOH . S 12 HOH D 4 2104 9 HOH HOH . S 12 HOH D 5 2105 12 HOH HOH . S 12 HOH D 6 2106 14 HOH HOH . S 12 HOH D 7 2107 20 HOH HOH . S 12 HOH D 8 2108 23 HOH HOH . S 12 HOH D 9 2109 24 HOH HOH . S 12 HOH D 10 2110 26 HOH HOH . S 12 HOH D 11 2111 27 HOH HOH . S 12 HOH D 12 2112 31 HOH HOH . S 12 HOH D 13 2113 35 HOH HOH . S 12 HOH D 14 2114 36 HOH HOH . S 12 HOH D 15 2115 37 HOH HOH . S 12 HOH D 16 2116 38 HOH HOH . S 12 HOH D 17 2117 39 HOH HOH . S 12 HOH D 18 2118 40 HOH HOH . S 12 HOH D 19 2119 41 HOH HOH . S 12 HOH D 20 2120 43 HOH HOH . S 12 HOH D 21 2121 45 HOH HOH . S 12 HOH D 22 2122 49 HOH HOH . S 12 HOH D 23 2123 51 HOH HOH . S 12 HOH D 24 2124 52 HOH HOH . S 12 HOH D 25 2125 53 HOH HOH . S 12 HOH D 26 2126 54 HOH HOH . T 12 HOH E 1 101 33 HOH HOH . T 12 HOH E 2 102 55 HOH HOH . U 12 HOH G 1 101 28 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 10 _atom_site.Cartn_x 176.906 _atom_site.Cartn_y 2.885 _atom_site.Cartn_z 89.011 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 54.93 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 2004 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 153 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #