data_4Q5S # _model_server_result.job_id yrFxXoNsn7NSkokijmpOyw _model_server_result.datetime_utc '2024-11-28 09:30:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q5s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":101}' # _entry.id 4Q5S # _exptl.entry_id 4Q5S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.14 _cell.angle_gamma 90 _cell.entry_id 4Q5S _cell.length_a 187.089 _cell.length_b 102.075 _cell.length_c 297.263 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q5S _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 11 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D SG CYS 58 D CYS 58 1_555 K ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc2 D SG CYS 60 D CYS 60 1_555 K ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc3 D SG CYS 73 D CYS 73 1_555 K ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc4 D SG CYS 76 D CYS 76 1_555 K ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc5 D OD1 ASP 739 D ASP 739 1_555 J MG MG . D MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc6 D OD1 ASP 741 D ASP 741 1_555 J MG MG . D MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc7 D OD1 ASP 743 D ASP 743 1_555 J MG MG . D MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc8 D OD2 ASP 743 D ASP 743 1_555 J MG MG . D MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc9 D SG CYS 1112 D CYS 1112 1_555 L ZN ZN . D ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc10 D SG CYS 1194 D CYS 1194 1_555 L ZN ZN . D ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc11 D SG CYS 1201 D CYS 1201 1_555 L ZN ZN . D ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc12 D SG CYS 1204 D CYS 1204 1_555 L ZN ZN . D ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc13 J MG MG . D MG 2001 1_555 I O3' A 4 I A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc14 J MG MG . D MG 2001 1_555 I OP1 C 5 I C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? hydrog WATSON-CRICK hydrog1 G N3 DT 3 G DT 3 1_555 H N1 DA 25 H DA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 G O4 DT 3 G DT 3 1_555 H N6 DA 25 H DA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog3 G N1 DG 4 G DG 4 1_555 H O2 DC 24 H DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 G N3 DC 5 G DC 5 1_555 H N1 DG 23 H DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 G N4 DC 5 G DC 5 1_555 H O6 DG 23 H DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 G O2 DC 5 G DC 5 1_555 H N2 DG 23 H DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 G N1 DA 6 G DA 6 1_555 H N3 DT 22 H DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 G N6 DA 6 G DA 6 1_555 H O4 DT 22 H DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 G N3 DT 7 G DT 7 1_555 H N1 DA 21 H DA 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 G O4 DT 7 G DT 7 1_555 H N6 DA 21 H DA 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 G N3 DC 8 G DC 8 1_555 H N1 DG 20 H DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 G N4 DC 8 G DC 8 1_555 H O6 DG 20 H DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 G O2 DC 8 G DC 8 1_555 H N2 DG 20 H DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog14 G O2 DC 9 G DC 9 1_555 H N2 DG 19 H DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-C PAIR' hydrog15 G N2 DG 10 G DG 10 1_555 I O2 C 5 I C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 G N3 DT 11 G DT 11 1_555 I N1 A 4 I A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 G O4 DT 11 G DT 11 1_555 I N6 A 4 I A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 G N1 DG 12 G DG 12 1_555 I N3 C 3 I C 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 G N2 DG 12 G DG 12 1_555 I O2 C 3 I C 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 G O6 DG 12 G DG 12 1_555 I N4 C 3 I C 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 G N1 DA 13 G DA 13 1_555 I N3 U 2 I U 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 G N6 DA 13 G DA 13 1_555 I O4 U 2 I U 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-C PAIR' hydrog23 G N1 DG 14 G DG 14 1_555 I N3 C 1 I C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 109 n n PG O2G ATP sing 110 n n PG O3G ATP sing 111 n n PG O3B ATP sing 112 n n O2G HOG2 ATP sing 113 n n O3G HOG3 ATP sing 114 n n PB O1B ATP doub 115 n n PB O2B ATP sing 116 n n PB O3B ATP sing 117 n n PB O3A ATP sing 118 n n O2B HOB2 ATP sing 119 n n PA O1A ATP doub 120 n n PA O2A ATP sing 121 n n PA O3A ATP sing 122 n n PA O5' ATP sing 123 n n O2A HOA2 ATP sing 124 n n O5' C5' ATP sing 125 n n C5' C4' ATP sing 126 n n C5' "H5'1" ATP sing 127 n n C5' "H5'2" ATP sing 128 n n C4' O4' ATP sing 129 n n C4' C3' ATP sing 130 n n C4' H4' ATP sing 131 n n O4' C1' ATP sing 132 n n C3' O3' ATP sing 133 n n C3' C2' ATP sing 134 n n C3' H3' ATP sing 135 n n O3' HO3' ATP sing 136 n n C2' O2' ATP sing 137 n n C2' C1' ATP sing 138 n n C2' H2' ATP sing 139 n n O2' HO2' ATP sing 140 n n C1' N9 ATP sing 141 n n C1' H1' ATP sing 142 n n N9 C8 ATP sing 143 n y N9 C4 ATP sing 144 n y C8 N7 ATP doub 145 n y C8 H8 ATP sing 146 n n N7 C5 ATP sing 147 n y C5 C6 ATP sing 148 n y C5 C4 ATP doub 149 n y C6 N6 ATP sing 150 n n C6 N1 ATP doub 151 n y N6 HN61 ATP sing 152 n n N6 HN62 ATP sing 153 n n N1 C2 ATP sing 154 n y C2 N3 ATP doub 155 n y C2 H2 ATP sing 156 n n N3 C4 ATP sing 157 n y # _atom_sites.entry_id 4Q5S _atom_sites.fract_transf_matrix[1][1] 0.005345 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000765 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009797 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003398 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 9 MG D 1 2001 2001 MG MG . K 10 ZN D 1 2002 2002 ZN ZN . L 10 ZN D 1 2003 2003 ZN ZN . M 11 ATP I 1 101 101 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . M 11 197.817 0.653 66.434 1 171.81 ? PG ATP 101 I 1 HETATM 2 O O1G ATP . . . M 11 199.189 1.289 66.427 1 171.78 ? O1G ATP 101 I 1 HETATM 3 O O2G ATP . . . M 11 197.448 -0.021 65.132 1 176.07 ? O2G ATP 101 I 1 HETATM 4 O O3G ATP . . . M 11 196.721 1.504 67.033 1 163.68 ? O3G ATP 101 I 1 HETATM 5 P PB ATP . . . M 11 198.886 -1.843 67.123 1 200.56 ? PB ATP 101 I 1 HETATM 6 O O1B ATP . . . M 11 198.185 -2.661 66.063 1 200.46 ? O1B ATP 101 I 1 HETATM 7 O O2B ATP . . . M 11 200.296 -1.352 66.889 1 195.78 ? O2B ATP 101 I 1 HETATM 8 O O3B ATP . . . M 11 197.957 -0.574 67.466 1 170.5 ? O3B ATP 101 I 1 HETATM 9 P PA ATP . . . M 11 199.019 -4.253 68.587 1 188.78 ? PA ATP 101 I 1 HETATM 10 O O1A ATP . . . M 11 199.629 -4.728 67.289 1 193.58 ? O1A ATP 101 I 1 HETATM 11 O O2A ATP . . . M 11 197.691 -4.819 69.037 1 179.24 ? O2A ATP 101 I 1 HETATM 12 O O3A ATP . . . M 11 198.859 -2.651 68.517 1 233.71 ? O3A ATP 101 I 1 HETATM 13 O O5' ATP . . . M 11 200.117 -4.407 69.76 1 147.97 ? O5' ATP 101 I 1 HETATM 14 C C5' ATP . . . M 11 200.135 -5.515 70.661 1 135.53 ? C5' ATP 101 I 1 HETATM 15 C C4' ATP . . . M 11 201.274 -5.544 71.208 1 107.67 ? C4' ATP 101 I 1 HETATM 16 O O4' ATP . . . M 11 202.113 -4.396 70.916 1 118.35 ? O4' ATP 101 I 1 HETATM 17 C C3' ATP . . . M 11 200.897 -5.372 72.672 1 92.8 ? C3' ATP 101 I 1 HETATM 18 O O3' ATP . . . M 11 200.533 -6.592 73.294 1 92.86 ? O3' ATP 101 I 1 HETATM 19 C C2' ATP . . . M 11 202.145 -4.732 73.266 1 83.76 ? C2' ATP 101 I 1 HETATM 20 O O2' ATP . . . M 11 203.15 -5.709 73.493 1 79.95 ? O2' ATP 101 I 1 HETATM 21 C C1' ATP . . . M 11 202.596 -3.832 72.116 1 98.22 ? C1' ATP 101 I 1 HETATM 22 N N9 ATP . . . M 11 202.048 -2.468 72.233 1 92.51 ? N9 ATP 101 I 1 HETATM 23 C C8 ATP . . . M 11 201.092 -1.892 71.433 1 92.55 ? C8 ATP 101 I 1 HETATM 24 N N7 ATP . . . M 11 200.795 -0.662 71.766 1 84.65 ? N7 ATP 101 I 1 HETATM 25 C C5 ATP . . . M 11 201.613 -0.41 72.858 1 84.6 ? C5 ATP 101 I 1 HETATM 26 C C6 ATP . . . M 11 201.774 0.723 73.67 1 79.05 ? C6 ATP 101 I 1 HETATM 27 N N6 ATP . . . M 11 201.087 1.851 73.493 1 80.31 ? N6 ATP 101 I 1 HETATM 28 N N1 ATP . . . M 11 202.672 0.654 74.678 1 72.91 ? N1 ATP 101 I 1 HETATM 29 C C2 ATP . . . M 11 203.356 -0.485 74.848 1 77.38 ? C2 ATP 101 I 1 HETATM 30 N N3 ATP . . . M 11 203.294 -1.618 74.151 1 81.78 ? N3 ATP 101 I 1 HETATM 31 C C4 ATP . . . M 11 202.393 -1.512 73.158 1 85.85 ? C4 ATP 101 I 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 390 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #