data_4Q62 # _model_server_result.job_id IP7N0TM6k9P0Zn--KAYTEQ _model_server_result.datetime_utc '2024-12-22 06:11:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q62 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":514}' # _entry.id 4Q62 # _exptl.entry_id 4Q62 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.54 _cell.angle_gamma 90 _cell.entry_id 4Q62 _cell.length_a 88.765 _cell.length_b 97.47 _cell.length_c 57.24 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q62 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -21.941714 0 52.867559 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 103 A PRO 100 1_555 A N MSE 104 A MSE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C MSE 104 A MSE 101 1_555 A N PHE 105 A PHE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C SER 107 A SER 104 1_555 A N MSE 108 A MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C MSE 108 A MSE 105 1_555 A N LEU 109 A LEU 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 A C LYS 233 A LYS 230 1_555 A N MSE 234 A MSE 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale6 A C MSE 234 A MSE 231 1_555 A N ASN 235 A ASN 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 A C ASN 296 A ASN 293 1_555 A N MSE 297 A MSE 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 A C MSE 297 A MSE 294 1_555 A N THR 298 A THR 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C ARG 379 A ARG 376 1_555 A N MSE 380 A MSE 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C MSE 380 A MSE 377 1_555 A N LEU 381 A LEU 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4Q62 _atom_sites.fract_transf_matrix[1][1] 0.011266 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004675 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018915 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 431 SO4 SO4 . C 2 SO4 A 1 502 432 SO4 SO4 . D 2 SO4 A 1 503 433 SO4 SO4 . E 2 SO4 A 1 504 434 SO4 SO4 . F 2 SO4 A 1 505 435 SO4 SO4 . G 2 SO4 A 1 506 436 SO4 SO4 . H 2 SO4 A 1 507 437 SO4 SO4 . I 3 EDO A 1 508 439 EDO EDO . J 3 EDO A 1 509 440 EDO EDO . K 3 EDO A 1 510 441 EDO EDO . L 3 EDO A 1 511 442 EDO EDO . M 3 EDO A 1 512 443 EDO EDO . N 3 EDO A 1 513 444 EDO EDO . O 3 EDO A 1 514 445 EDO EDO . P 3 EDO A 1 515 446 EDO EDO . Q 3 EDO A 1 516 447 EDO EDO . R 3 EDO A 1 517 448 EDO EDO . S 4 HOH A 1 601 1 HOH HOH . S 4 HOH A 2 602 2 HOH HOH . S 4 HOH A 3 603 3 HOH HOH . S 4 HOH A 4 604 4 HOH HOH . S 4 HOH A 5 605 5 HOH HOH . S 4 HOH A 6 606 6 HOH HOH . S 4 HOH A 7 607 7 HOH HOH . S 4 HOH A 8 608 8 HOH HOH . S 4 HOH A 9 609 9 HOH HOH . S 4 HOH A 10 610 10 HOH HOH . S 4 HOH A 11 611 11 HOH HOH . S 4 HOH A 12 612 12 HOH HOH . S 4 HOH A 13 613 13 HOH HOH . S 4 HOH A 14 614 14 HOH HOH . S 4 HOH A 15 615 15 HOH HOH . S 4 HOH A 16 616 16 HOH HOH . S 4 HOH A 17 617 17 HOH HOH . S 4 HOH A 18 618 18 HOH HOH . S 4 HOH A 19 619 19 HOH HOH . S 4 HOH A 20 620 20 HOH HOH . S 4 HOH A 21 621 21 HOH HOH . S 4 HOH A 22 622 22 HOH HOH . S 4 HOH A 23 623 23 HOH HOH . S 4 HOH A 24 624 24 HOH HOH . S 4 HOH A 25 625 25 HOH HOH . S 4 HOH A 26 626 26 HOH HOH . S 4 HOH A 27 627 27 HOH HOH . S 4 HOH A 28 628 28 HOH HOH . S 4 HOH A 29 629 29 HOH HOH . S 4 HOH A 30 630 30 HOH HOH . S 4 HOH A 31 631 31 HOH HOH . S 4 HOH A 32 632 32 HOH HOH . S 4 HOH A 33 633 33 HOH HOH . S 4 HOH A 34 634 34 HOH HOH . S 4 HOH A 35 635 35 HOH HOH . S 4 HOH A 36 636 36 HOH HOH . S 4 HOH A 37 637 37 HOH HOH . S 4 HOH A 38 638 38 HOH HOH . S 4 HOH A 39 639 39 HOH HOH . S 4 HOH A 40 640 40 HOH HOH . S 4 HOH A 41 641 41 HOH HOH . S 4 HOH A 42 642 42 HOH HOH . S 4 HOH A 43 643 43 HOH HOH . S 4 HOH A 44 644 44 HOH HOH . S 4 HOH A 45 645 45 HOH HOH . S 4 HOH A 46 646 46 HOH HOH . S 4 HOH A 47 647 47 HOH HOH . S 4 HOH A 48 648 48 HOH HOH . S 4 HOH A 49 649 49 HOH HOH . S 4 HOH A 50 650 50 HOH HOH . S 4 HOH A 51 651 51 HOH HOH . S 4 HOH A 52 652 52 HOH HOH . S 4 HOH A 53 653 53 HOH HOH . S 4 HOH A 54 654 54 HOH HOH . S 4 HOH A 55 655 55 HOH HOH . S 4 HOH A 56 656 56 HOH HOH . S 4 HOH A 57 657 57 HOH HOH . S 4 HOH A 58 658 58 HOH HOH . S 4 HOH A 59 659 59 HOH HOH . S 4 HOH A 60 660 60 HOH HOH . S 4 HOH A 61 661 61 HOH HOH . S 4 HOH A 62 662 62 HOH HOH . S 4 HOH A 63 663 63 HOH HOH . S 4 HOH A 64 664 64 HOH HOH . S 4 HOH A 65 665 65 HOH HOH . S 4 HOH A 66 666 66 HOH HOH . S 4 HOH A 67 667 67 HOH HOH . S 4 HOH A 68 668 68 HOH HOH . S 4 HOH A 69 669 69 HOH HOH . S 4 HOH A 70 670 70 HOH HOH . S 4 HOH A 71 671 71 HOH HOH . S 4 HOH A 72 672 72 HOH HOH . S 4 HOH A 73 673 73 HOH HOH . S 4 HOH A 74 674 74 HOH HOH . S 4 HOH A 75 675 75 HOH HOH . S 4 HOH A 76 676 76 HOH HOH . S 4 HOH A 77 677 77 HOH HOH . S 4 HOH A 78 678 78 HOH HOH . S 4 HOH A 79 679 79 HOH HOH . S 4 HOH A 80 680 80 HOH HOH . S 4 HOH A 81 681 81 HOH HOH . S 4 HOH A 82 682 82 HOH HOH . S 4 HOH A 83 683 83 HOH HOH . S 4 HOH A 84 684 84 HOH HOH . S 4 HOH A 85 685 85 HOH HOH . S 4 HOH A 86 686 86 HOH HOH . S 4 HOH A 87 687 87 HOH HOH . S 4 HOH A 88 688 88 HOH HOH . S 4 HOH A 89 689 89 HOH HOH . S 4 HOH A 90 690 90 HOH HOH . S 4 HOH A 91 691 91 HOH HOH . S 4 HOH A 92 692 92 HOH HOH . S 4 HOH A 93 693 93 HOH HOH . S 4 HOH A 94 694 94 HOH HOH . S 4 HOH A 95 695 95 HOH HOH . S 4 HOH A 96 696 96 HOH HOH . S 4 HOH A 97 697 97 HOH HOH . S 4 HOH A 98 698 98 HOH HOH . S 4 HOH A 99 699 99 HOH HOH . S 4 HOH A 100 700 100 HOH HOH . S 4 HOH A 101 701 101 HOH HOH . S 4 HOH A 102 702 102 HOH HOH . S 4 HOH A 103 703 103 HOH HOH . S 4 HOH A 104 704 104 HOH HOH . S 4 HOH A 105 705 105 HOH HOH . S 4 HOH A 106 706 106 HOH HOH . S 4 HOH A 107 707 107 HOH HOH . S 4 HOH A 108 708 108 HOH HOH . S 4 HOH A 109 709 109 HOH HOH . S 4 HOH A 110 710 110 HOH HOH . S 4 HOH A 111 711 111 HOH HOH . S 4 HOH A 112 712 112 HOH HOH . S 4 HOH A 113 713 113 HOH HOH . S 4 HOH A 114 714 114 HOH HOH . S 4 HOH A 115 715 115 HOH HOH . S 4 HOH A 116 716 116 HOH HOH . S 4 HOH A 117 717 117 HOH HOH . S 4 HOH A 118 718 118 HOH HOH . S 4 HOH A 119 719 119 HOH HOH . S 4 HOH A 120 720 120 HOH HOH . S 4 HOH A 121 721 121 HOH HOH . S 4 HOH A 122 722 122 HOH HOH . S 4 HOH A 123 723 123 HOH HOH . S 4 HOH A 124 724 124 HOH HOH . S 4 HOH A 125 725 125 HOH HOH . S 4 HOH A 126 726 126 HOH HOH . S 4 HOH A 127 727 127 HOH HOH . S 4 HOH A 128 728 128 HOH HOH . S 4 HOH A 129 729 129 HOH HOH . S 4 HOH A 130 730 130 HOH HOH . S 4 HOH A 131 731 131 HOH HOH . S 4 HOH A 132 732 132 HOH HOH . S 4 HOH A 133 733 133 HOH HOH . S 4 HOH A 134 734 134 HOH HOH . S 4 HOH A 135 735 135 HOH HOH . S 4 HOH A 136 736 136 HOH HOH . S 4 HOH A 137 737 137 HOH HOH . S 4 HOH A 138 738 138 HOH HOH . S 4 HOH A 139 739 139 HOH HOH . S 4 HOH A 140 740 140 HOH HOH . S 4 HOH A 141 741 141 HOH HOH . S 4 HOH A 142 742 142 HOH HOH . S 4 HOH A 143 743 143 HOH HOH . S 4 HOH A 144 744 144 HOH HOH . S 4 HOH A 145 745 145 HOH HOH . S 4 HOH A 146 746 146 HOH HOH . S 4 HOH A 147 747 147 HOH HOH . S 4 HOH A 148 748 148 HOH HOH . S 4 HOH A 149 749 149 HOH HOH . S 4 HOH A 150 750 150 HOH HOH . S 4 HOH A 151 751 151 HOH HOH . S 4 HOH A 152 752 152 HOH HOH . S 4 HOH A 153 753 153 HOH HOH . S 4 HOH A 154 754 154 HOH HOH . S 4 HOH A 155 755 155 HOH HOH . S 4 HOH A 156 756 156 HOH HOH . S 4 HOH A 157 757 157 HOH HOH . S 4 HOH A 158 758 158 HOH HOH . S 4 HOH A 159 759 159 HOH HOH . S 4 HOH A 160 760 160 HOH HOH . S 4 HOH A 161 761 161 HOH HOH . S 4 HOH A 162 762 162 HOH HOH . S 4 HOH A 163 763 163 HOH HOH . S 4 HOH A 164 764 164 HOH HOH . S 4 HOH A 165 765 165 HOH HOH . S 4 HOH A 166 766 166 HOH HOH . S 4 HOH A 167 767 167 HOH HOH . S 4 HOH A 168 768 168 HOH HOH . S 4 HOH A 169 769 169 HOH HOH . S 4 HOH A 170 770 170 HOH HOH . S 4 HOH A 171 771 171 HOH HOH . S 4 HOH A 172 772 172 HOH HOH . S 4 HOH A 173 773 173 HOH HOH . S 4 HOH A 174 774 174 HOH HOH . S 4 HOH A 175 775 175 HOH HOH . S 4 HOH A 176 776 176 HOH HOH . S 4 HOH A 177 777 177 HOH HOH . S 4 HOH A 178 778 178 HOH HOH . S 4 HOH A 179 779 179 HOH HOH . S 4 HOH A 180 780 180 HOH HOH . S 4 HOH A 181 781 181 HOH HOH . S 4 HOH A 182 782 182 HOH HOH . S 4 HOH A 183 783 183 HOH HOH . S 4 HOH A 184 784 184 HOH HOH . S 4 HOH A 185 785 185 HOH HOH . S 4 HOH A 186 786 186 HOH HOH . S 4 HOH A 187 787 187 HOH HOH . S 4 HOH A 188 788 188 HOH HOH . S 4 HOH A 189 789 189 HOH HOH . S 4 HOH A 190 790 190 HOH HOH . S 4 HOH A 191 791 191 HOH HOH . S 4 HOH A 192 792 192 HOH HOH . S 4 HOH A 193 793 193 HOH HOH . S 4 HOH A 194 794 194 HOH HOH . S 4 HOH A 195 795 195 HOH HOH . S 4 HOH A 196 796 196 HOH HOH . S 4 HOH A 197 797 197 HOH HOH . S 4 HOH A 198 798 198 HOH HOH . S 4 HOH A 199 799 199 HOH HOH . S 4 HOH A 200 800 200 HOH HOH . S 4 HOH A 201 801 201 HOH HOH . S 4 HOH A 202 802 202 HOH HOH . S 4 HOH A 203 803 203 HOH HOH . S 4 HOH A 204 804 204 HOH HOH . S 4 HOH A 205 805 205 HOH HOH . S 4 HOH A 206 806 206 HOH HOH . S 4 HOH A 207 807 207 HOH HOH . S 4 HOH A 208 808 208 HOH HOH . S 4 HOH A 209 809 209 HOH HOH . S 4 HOH A 210 810 210 HOH HOH . S 4 HOH A 211 811 211 HOH HOH . S 4 HOH A 212 812 212 HOH HOH . S 4 HOH A 213 813 213 HOH HOH . S 4 HOH A 214 814 214 HOH HOH . S 4 HOH A 215 815 215 HOH HOH . S 4 HOH A 216 816 216 HOH HOH . S 4 HOH A 217 817 217 HOH HOH . S 4 HOH A 218 818 218 HOH HOH . S 4 HOH A 219 819 219 HOH HOH . S 4 HOH A 220 820 220 HOH HOH . S 4 HOH A 221 821 221 HOH HOH . S 4 HOH A 222 822 222 HOH HOH . S 4 HOH A 223 823 223 HOH HOH . S 4 HOH A 224 824 224 HOH HOH . S 4 HOH A 225 825 225 HOH HOH . S 4 HOH A 226 826 226 HOH HOH . S 4 HOH A 227 827 227 HOH HOH . S 4 HOH A 228 828 228 HOH HOH . S 4 HOH A 229 829 229 HOH HOH . S 4 HOH A 230 830 230 HOH HOH . S 4 HOH A 231 831 231 HOH HOH . S 4 HOH A 232 832 232 HOH HOH . S 4 HOH A 233 833 233 HOH HOH . S 4 HOH A 234 834 234 HOH HOH . S 4 HOH A 235 835 235 HOH HOH . S 4 HOH A 236 836 236 HOH HOH . S 4 HOH A 237 837 237 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . O 3 13.581 92.762 36.759 1 40.43 ? C1 EDO 514 A 1 HETATM 2 O O1 EDO . . . O 3 14.612 91.774 36.88 1 42.48 ? O1 EDO 514 A 1 HETATM 3 C C2 EDO . . . O 3 12.235 92.1 37.024 1 39.92 ? C2 EDO 514 A 1 HETATM 4 O O2 EDO . . . O 3 11.303 93.083 37.479 1 34.71 ? O2 EDO 514 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 1018 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 4 #