data_4Q66
#
_model_server_result.job_id            qVzuByVNsgk_lRHFu03Q9w 
_model_server_result.datetime_utc      '2025-03-06 06:33:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4q66 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":201}' 
#
_entry.id    4Q66 
#
_exptl.entry_id    4Q66 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.48 
_cell.angle_gamma         90 
_cell.entry_id            4Q66 
_cell.length_a            114.659 
_cell.length_b            208.168 
_cell.length_c            155.078 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Q66 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? hexameric 6 author_defined_assembly 1 
? hexameric 6 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,F,G,I,K,M,N,Q,R 1 1 
B,C,E,H,J,L,O,P,S,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 M N N 
? 4 O N N 
? 4 Q N N 
? 4 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 I OG1 THR 42 F THR 48 1_555 N MG MG . F MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc2 M O2B GNP . F GNP 201 1_555 N MG MG . F MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc3 M O3G GNP . F GNP 201 1_555 N MG MG . F MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
metalc ? metalc4 M O2G GNP . F GNP 201 1_555 N MG MG . F MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? 
metalc ? metalc5 J OG1 THR 42 L THR 48 1_555 P MG MG . L MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? 
metalc ? metalc6 O O2G GNP . L GNP 201 1_555 P MG MG . L MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc7 O O2B GNP . L GNP 201 1_555 P MG MG . L MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc8 O O3G GNP . L GNP 201 1_555 P MG MG . L MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? 
metalc ? metalc9 K OG1 THR 42 C THR 48 1_555 R MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc10 Q O2B GNP . C GNP 201 1_555 R MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc11 Q O2G GNP . C GNP 201 1_555 R MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? 
metalc ? metalc12 Q O3G GNP . C GNP 201 1_555 R MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? 
metalc ? metalc13 S O2B GNP . I GNP 201 1_555 T MG MG . I MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc14 S O2G GNP . I GNP 201 1_555 T MG MG . I MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? 
metalc ? metalc15 S O3G GNP . I GNP 201 1_555 T MG MG . I MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     4Q66 
_atom_sites.fract_transf_matrix[1][1]    0.008722 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002415 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004804 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006691 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 4 GNP F 1 201 201 GNP GNP . 
N 5 MG F 1 202 202 MG MG . 
O 4 GNP L 1 201 201 GNP GNP . 
P 5 MG L 1 202 202 MG MG . 
Q 4 GNP C 1 201 201 GNP GNP . 
R 5 MG C 1 202 202 MG MG . 
S 4 GNP I 1 201 201 GNP GNP . 
T 5 MG I 1 202 202 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . S 4 -15.898 94.967 91.394 1 104.67 ? PG GNP 201 I 1 
HETATM 2 O O1G GNP . . . S 4 -16.669 93.723 91.764 1 106.74 ? O1G GNP 201 I 1 
HETATM 3 O O2G GNP . . . S 4 -14.569 94.744 90.712 1 114.26 ? O2G GNP 201 I 1 
HETATM 4 O O3G GNP . . . S 4 -15.858 95.794 92.656 1 94.41 ? O3G GNP 201 I 1 
HETATM 5 N N3B GNP . . . S 4 -16.754 95.798 90.359 1 244.32 ? N3B GNP 201 I 1 
HETATM 6 P PB GNP . . . S 4 -16.952 97.353 90.552 1 117.95 ? PB GNP 201 I 1 
HETATM 7 O O1B GNP . . . S 4 -17.939 97.613 91.624 1 118.87 ? O1B GNP 201 I 1 
HETATM 8 O O2B GNP . . . S 4 -15.597 97.929 90.703 1 113.43 ? O2B GNP 201 I 1 
HETATM 9 O O3A GNP . . . S 4 -17.541 97.892 89.256 1 123.98 ? O3A GNP 201 I 1 
HETATM 10 P PA GNP . . . S 4 -16.647 98.495 88.183 1 115.69 ? PA GNP 201 I 1 
HETATM 11 O O1A GNP . . . S 4 -16.291 99.859 88.635 1 122.48 ? O1A GNP 201 I 1 
HETATM 12 O O2A GNP . . . S 4 -15.548 97.563 87.847 1 101.47 ? O2A GNP 201 I 1 
HETATM 13 O O5' GNP . . . S 4 -17.521 98.659 86.877 1 50.76 ? O5' GNP 201 I 1 
HETATM 14 C C5' GNP . . . S 4 -18.531 97.706 86.568 1 64.13 ? C5' GNP 201 I 1 
HETATM 15 C C4' GNP . . . S 4 -19.22 98.058 85.262 1 78.38 ? C4' GNP 201 I 1 
HETATM 16 O O4' GNP . . . S 4 -20.064 99.223 85.452 1 82.56 ? O4' GNP 201 I 1 
HETATM 17 C C3' GNP . . . S 4 -18.273 98.39 84.11 1 88.18 ? C3' GNP 201 I 1 
HETATM 18 O O3' GNP . . . S 4 -18.651 97.664 82.943 1 93.42 ? O3' GNP 201 I 1 
HETATM 19 C C2' GNP . . . S 4 -18.438 99.898 83.929 1 90.14 ? C2' GNP 201 I 1 
HETATM 20 O O2' GNP . . . S 4 -18.261 100.312 82.588 1 94.86 ? O2' GNP 201 I 1 
HETATM 21 C C1' GNP . . . S 4 -19.885 100.101 84.361 1 90.46 ? C1' GNP 201 I 1 
HETATM 22 N N9 GNP . . . S 4 -20.182 101.46 84.804 1 95.17 ? N9 GNP 201 I 1 
HETATM 23 C C8 GNP . . . S 4 -19.602 102.133 85.852 1 95.97 ? C8 GNP 201 I 1 
HETATM 24 N N7 GNP . . . S 4 -20.067 103.34 86.017 1 90.68 ? N7 GNP 201 I 1 
HETATM 25 C C5 GNP . . . S 4 -21.019 103.477 85.015 1 94.05 ? C5 GNP 201 I 1 
HETATM 26 C C6 GNP . . . S 4 -21.855 104.573 84.698 1 100.22 ? C6 GNP 201 I 1 
HETATM 27 O O6 GNP . . . S 4 -21.92 105.676 85.259 1 107.24 ? O6 GNP 201 I 1 
HETATM 28 N N1 GNP . . . S 4 -22.677 104.297 83.607 1 92.88 ? N1 GNP 201 I 1 
HETATM 29 C C2 GNP . . . S 4 -22.688 103.111 82.912 1 85.29 ? C2 GNP 201 I 1 
HETATM 30 N N2 GNP . . . S 4 -23.55 103.033 81.888 1 80.81 ? N2 GNP 201 I 1 
HETATM 31 N N3 GNP . . . S 4 -21.909 102.075 83.199 1 88.86 ? N3 GNP 201 I 1 
HETATM 32 C C4 GNP . . . S 4 -21.103 102.328 84.259 1 93.21 ? C4 GNP 201 I 1 
#
_model_server_stats.io_time_ms              90 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           32 
#