data_4Q67 # _model_server_result.job_id OY8UC9JIuRqNiwIJ4nT5_Q _model_server_result.datetime_utc '2025-02-23 04:54:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q67 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4Q67 # _exptl.entry_id 4Q67 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4Q67 _cell.length_a 79.26 _cell.length_b 79.26 _cell.length_c 107.42 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q67 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 224 n n PA O2A NAP sing 225 n n PA O5B NAP sing 226 n n PA O3 NAP sing 227 n n O2A HOA2 NAP sing 228 n n O5B C5B NAP sing 229 n n C5B C4B NAP sing 230 n n C5B H51A NAP sing 231 n n C5B H52A NAP sing 232 n n C4B O4B NAP sing 233 n n C4B C3B NAP sing 234 n n C4B H4B NAP sing 235 n n O4B C1B NAP sing 236 n n C3B O3B NAP sing 237 n n C3B C2B NAP sing 238 n n C3B H3B NAP sing 239 n n O3B HO3A NAP sing 240 n n C2B O2B NAP sing 241 n n C2B C1B NAP sing 242 n n C2B H2B NAP sing 243 n n O2B P2B NAP sing 244 n n C1B N9A NAP sing 245 n n C1B H1B NAP sing 246 n n N9A C8A NAP sing 247 n y N9A C4A NAP sing 248 n y C8A N7A NAP doub 249 n y C8A H8A NAP sing 250 n n N7A C5A NAP sing 251 n y C5A C6A NAP sing 252 n y C5A C4A NAP doub 253 n y C6A N6A NAP sing 254 n n C6A N1A NAP doub 255 n y N6A H61A NAP sing 256 n n N6A H62A NAP sing 257 n n N1A C2A NAP sing 258 n y C2A N3A NAP doub 259 n y C2A H2A NAP sing 260 n n N3A C4A NAP sing 261 n y O3 PN NAP sing 262 n n PN O1N NAP doub 263 n n PN O2N NAP sing 264 n n PN O5D NAP sing 265 n n O5D C5D NAP sing 266 n n C5D C4D NAP sing 267 n n C5D H51N NAP sing 268 n n C5D H52N NAP sing 269 n n C4D O4D NAP sing 270 n n C4D C3D NAP sing 271 n n C4D H4D NAP sing 272 n n O4D C1D NAP sing 273 n n C3D O3D NAP sing 274 n n C3D C2D NAP sing 275 n n C3D H3D NAP sing 276 n n O3D HO3N NAP sing 277 n n C2D O2D NAP sing 278 n n C2D C1D NAP sing 279 n n C2D H2D NAP sing 280 n n O2D HO2N NAP sing 281 n n C1D N1N NAP sing 282 n n C1D H1D NAP sing 283 n n N1N C2N NAP sing 284 n y N1N C6N NAP doub 285 n y C2N C3N NAP doub 286 n y C2N H2N NAP sing 287 n n C3N C7N NAP sing 288 n n C3N C4N NAP sing 289 n y C7N O7N NAP doub 290 n n C7N N7N NAP sing 291 n n N7N H71N NAP sing 292 n n N7N H72N NAP sing 293 n n C4N C5N NAP doub 294 n y C4N H4N NAP sing 295 n n C5N C6N NAP sing 296 n y C5N H5N NAP sing 297 n n C6N H6N NAP sing 298 n n P2B O1X NAP doub 299 n n P2B O2X NAP sing 300 n n P2B O3X NAP sing 301 n n O2X HOP2 NAP sing 302 n n O3X HOP3 NAP sing 303 n n # _atom_sites.entry_id 4Q67 _atom_sites.fract_transf_matrix[1][1] 0.012617 _atom_sites.fract_transf_matrix[1][2] 0.007284 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014569 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009309 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 207 NAP NAP . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . C 3 HOH A 6 306 6 HOH HOH . C 3 HOH A 7 307 7 HOH HOH . C 3 HOH A 8 308 8 HOH HOH . C 3 HOH A 9 309 9 HOH HOH . C 3 HOH A 10 310 10 HOH HOH . C 3 HOH A 11 311 11 HOH HOH . C 3 HOH A 12 312 12 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 14 HOH HOH . C 3 HOH A 15 315 15 HOH HOH . C 3 HOH A 16 316 16 HOH HOH . C 3 HOH A 17 317 18 HOH HOH . C 3 HOH A 18 318 19 HOH HOH . C 3 HOH A 19 319 20 HOH HOH . C 3 HOH A 20 320 22 HOH HOH . C 3 HOH A 21 321 23 HOH HOH . C 3 HOH A 22 322 24 HOH HOH . C 3 HOH A 23 323 25 HOH HOH . C 3 HOH A 24 324 26 HOH HOH . C 3 HOH A 25 325 27 HOH HOH . C 3 HOH A 26 326 28 HOH HOH . C 3 HOH A 27 327 29 HOH HOH . C 3 HOH A 28 328 30 HOH HOH . C 3 HOH A 29 329 31 HOH HOH . C 3 HOH A 30 330 32 HOH HOH . C 3 HOH A 31 331 33 HOH HOH . C 3 HOH A 32 332 34 HOH HOH . C 3 HOH A 33 333 35 HOH HOH . C 3 HOH A 34 334 36 HOH HOH . C 3 HOH A 35 335 37 HOH HOH . C 3 HOH A 36 336 38 HOH HOH . C 3 HOH A 37 337 39 HOH HOH . C 3 HOH A 38 338 40 HOH HOH . C 3 HOH A 39 339 41 HOH HOH . C 3 HOH A 40 340 42 HOH HOH . C 3 HOH A 41 341 43 HOH HOH . C 3 HOH A 42 342 46 HOH HOH . C 3 HOH A 43 343 47 HOH HOH . C 3 HOH A 44 344 48 HOH HOH . C 3 HOH A 45 345 49 HOH HOH . C 3 HOH A 46 346 50 HOH HOH . C 3 HOH A 47 347 51 HOH HOH . C 3 HOH A 48 348 53 HOH HOH . C 3 HOH A 49 349 54 HOH HOH . C 3 HOH A 50 350 55 HOH HOH . C 3 HOH A 51 351 56 HOH HOH . C 3 HOH A 52 352 57 HOH HOH . C 3 HOH A 53 353 58 HOH HOH . C 3 HOH A 54 354 59 HOH HOH . C 3 HOH A 55 355 60 HOH HOH . C 3 HOH A 56 356 61 HOH HOH . C 3 HOH A 57 357 62 HOH HOH . C 3 HOH A 58 358 63 HOH HOH . C 3 HOH A 59 359 64 HOH HOH . C 3 HOH A 60 360 65 HOH HOH . C 3 HOH A 61 361 66 HOH HOH . C 3 HOH A 62 362 67 HOH HOH . C 3 HOH A 63 363 68 HOH HOH . C 3 HOH A 64 364 69 HOH HOH . C 3 HOH A 65 365 70 HOH HOH . C 3 HOH A 66 366 71 HOH HOH . C 3 HOH A 67 367 72 HOH HOH . C 3 HOH A 68 368 73 HOH HOH . C 3 HOH A 69 369 74 HOH HOH . C 3 HOH A 70 370 75 HOH HOH . C 3 HOH A 71 371 76 HOH HOH . C 3 HOH A 72 372 77 HOH HOH . C 3 HOH A 73 373 78 HOH HOH . C 3 HOH A 74 374 79 HOH HOH . C 3 HOH A 75 375 80 HOH HOH . C 3 HOH A 76 376 81 HOH HOH . C 3 HOH A 77 377 82 HOH HOH . C 3 HOH A 78 378 83 HOH HOH . C 3 HOH A 79 379 84 HOH HOH . C 3 HOH A 80 380 85 HOH HOH . C 3 HOH A 81 381 86 HOH HOH . C 3 HOH A 82 382 87 HOH HOH . C 3 HOH A 83 383 88 HOH HOH . C 3 HOH A 84 384 89 HOH HOH . C 3 HOH A 85 385 90 HOH HOH . C 3 HOH A 86 386 91 HOH HOH . C 3 HOH A 87 387 92 HOH HOH . C 3 HOH A 88 388 93 HOH HOH . C 3 HOH A 89 389 94 HOH HOH . C 3 HOH A 90 390 95 HOH HOH . C 3 HOH A 91 391 96 HOH HOH . C 3 HOH A 92 392 97 HOH HOH . C 3 HOH A 93 393 98 HOH HOH . C 3 HOH A 94 394 99 HOH HOH . C 3 HOH A 95 395 100 HOH HOH . C 3 HOH A 96 396 101 HOH HOH . C 3 HOH A 97 397 102 HOH HOH . C 3 HOH A 98 398 103 HOH HOH . C 3 HOH A 99 399 104 HOH HOH . C 3 HOH A 100 400 105 HOH HOH . C 3 HOH A 101 401 106 HOH HOH . C 3 HOH A 102 402 107 HOH HOH . C 3 HOH A 103 403 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 -6.634 31.678 6.609 1 19.91 ? PA NAP 201 A 1 HETATM 2 O O1A NAP . . . B 2 -6.796 30.413 5.858 1 18.07 ? O1A NAP 201 A 1 HETATM 3 O O2A NAP . . . B 2 -5.311 32.309 6.454 1 19.25 ? O2A NAP 201 A 1 HETATM 4 O O5B NAP . . . B 2 -7.784 32.743 6.281 1 19.6 ? O5B NAP 201 A 1 HETATM 5 C C5B NAP . . . B 2 -9.129 32.341 6.369 1 16.6 ? C5B NAP 201 A 1 HETATM 6 C C4B NAP . . . B 2 -9.92 33.393 5.619 1 19.05 ? C4B NAP 201 A 1 HETATM 7 O O4B NAP . . . B 2 -9.627 33.249 4.249 1 21.79 ? O4B NAP 201 A 1 HETATM 8 C C3B NAP . . . B 2 -11.427 33.243 5.714 1 20.53 ? C3B NAP 201 A 1 HETATM 9 O O3B NAP . . . B 2 -11.933 33.814 6.897 1 20.28 ? O3B NAP 201 A 1 HETATM 10 C C2B NAP . . . B 2 -11.844 33.992 4.458 1 21.74 ? C2B NAP 201 A 1 HETATM 11 O O2B NAP . . . B 2 -11.637 35.381 4.618 1 24.52 ? O2B NAP 201 A 1 HETATM 12 C C1B NAP . . . B 2 -10.77 33.595 3.485 1 23.11 ? C1B NAP 201 A 1 HETATM 13 N N9A NAP . . . B 2 -11.247 32.441 2.71 1 22.81 ? N9A NAP 201 A 1 HETATM 14 C C8A NAP . . . B 2 -10.814 31.136 2.806 1 23.49 ? C8A NAP 201 A 1 HETATM 15 N N7A NAP . . . B 2 -11.511 30.405 1.901 1 27.15 ? N7A NAP 201 A 1 HETATM 16 C C5A NAP . . . B 2 -12.386 31.228 1.259 1 29.22 ? C5A NAP 201 A 1 HETATM 17 C C6A NAP . . . B 2 -13.327 31.013 0.258 1 32.45 ? C6A NAP 201 A 1 HETATM 18 N N6A NAP . . . B 2 -13.514 29.799 -0.257 1 29.31 ? N6A NAP 201 A 1 HETATM 19 N N1A NAP . . . B 2 -14.065 32.075 -0.211 1 30 ? N1A NAP 201 A 1 HETATM 20 C C2A NAP . . . B 2 -13.884 33.345 0.303 1 31.82 ? C2A NAP 201 A 1 HETATM 21 N N3A NAP . . . B 2 -12.958 33.557 1.298 1 22 ? N3A NAP 201 A 1 HETATM 22 C C4A NAP . . . B 2 -12.218 32.511 1.754 1 25.79 ? C4A NAP 201 A 1 HETATM 23 O O3 NAP . . . B 2 -6.935 31.369 8.162 1 18.31 ? O3 NAP 201 A 1 HETATM 24 P PN NAP . . . B 2 -6.75 30.08 9.109 1 20.49 ? PN NAP 201 A 1 HETATM 25 O O1N NAP . . . B 2 -7.166 30.533 10.451 1 18.28 ? O1N NAP 201 A 1 HETATM 26 O O2N NAP . . . B 2 -7.431 28.933 8.507 1 23.69 ? O2N NAP 201 A 1 HETATM 27 O O5D NAP . . . B 2 -5.144 29.833 9.095 1 17.81 ? O5D NAP 201 A 1 HETATM 28 C C5D NAP . . . B 2 -4.304 30.847 9.61 1 16.67 ? C5D NAP 201 A 1 HETATM 29 C C4D NAP . . . B 2 -3.082 30.247 10.28 1 21.96 ? C4D NAP 201 A 1 HETATM 30 O O4D NAP . . . B 2 -2.314 29.591 9.295 1 16.12 ? O4D NAP 201 A 1 HETATM 31 C C3D NAP . . . B 2 -2.175 31.313 10.907 1 16.22 ? C3D NAP 201 A 1 HETATM 32 O O3D NAP . . . B 2 -1.806 30.891 12.216 1 20.41 ? O3D NAP 201 A 1 HETATM 33 C C2D NAP . . . B 2 -0.938 31.308 10.044 1 14.33 ? C2D NAP 201 A 1 HETATM 34 O O2D NAP . . . B 2 0.214 31.566 10.811 1 19.53 ? O2D NAP 201 A 1 HETATM 35 C C1D NAP . . . B 2 -0.948 29.876 9.53 1 16.52 ? C1D NAP 201 A 1 HETATM 36 N N1N NAP . . . B 2 -0.079 29.706 8.356 1 19.57 ? N1N NAP 201 A 1 HETATM 37 C C2N NAP . . . B 2 0.907 28.77 8.453 1 14.14 ? C2N NAP 201 A 1 HETATM 38 C C3N NAP . . . B 2 1.778 28.561 7.4 1 14.72 ? C3N NAP 201 A 1 HETATM 39 C C7N NAP . . . B 2 2.826 27.504 7.555 1 17.13 ? C7N NAP 201 A 1 HETATM 40 O O7N NAP . . . B 2 3.553 27.143 6.425 1 17.94 ? O7N NAP 201 A 1 HETATM 41 N N7N NAP . . . B 2 3.031 26.943 8.755 1 17.28 ? N7N NAP 201 A 1 HETATM 42 C C4N NAP . . . B 2 1.666 29.315 6.232 1 18.93 ? C4N NAP 201 A 1 HETATM 43 C C5N NAP . . . B 2 0.656 30.278 6.139 1 18.28 ? C5N NAP 201 A 1 HETATM 44 C C6N NAP . . . B 2 -0.215 30.462 7.219 1 19.96 ? C6N NAP 201 A 1 HETATM 45 P P2B NAP . . . B 2 -12.809 36.366 5.106 1 24.72 ? P2B NAP 201 A 1 HETATM 46 O O1X NAP . . . B 2 -13.18 35.997 6.525 1 23.09 ? O1X NAP 201 A 1 HETATM 47 O O2X NAP . . . B 2 -12.263 37.778 5.017 1 24.7 ? O2X NAP 201 A 1 HETATM 48 O O3X NAP . . . B 2 -13.979 36.252 4.152 1 23.77 ? O3X NAP 201 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 48 #