data_4Q6A # _model_server_result.job_id gW0Xskm7jCa1x0yPyrhKXw _model_server_result.datetime_utc '2025-02-22 20:53:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q6a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4Q6A # _exptl.entry_id 4Q6A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4Q6A _cell.length_a 79.331 _cell.length_b 79.331 _cell.length_c 107.53 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q6A _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 243 n n PA O2A NAP sing 244 n n PA O5B NAP sing 245 n n PA O3 NAP sing 246 n n O2A HOA2 NAP sing 247 n n O5B C5B NAP sing 248 n n C5B C4B NAP sing 249 n n C5B H51A NAP sing 250 n n C5B H52A NAP sing 251 n n C4B O4B NAP sing 252 n n C4B C3B NAP sing 253 n n C4B H4B NAP sing 254 n n O4B C1B NAP sing 255 n n C3B O3B NAP sing 256 n n C3B C2B NAP sing 257 n n C3B H3B NAP sing 258 n n O3B HO3A NAP sing 259 n n C2B O2B NAP sing 260 n n C2B C1B NAP sing 261 n n C2B H2B NAP sing 262 n n O2B P2B NAP sing 263 n n C1B N9A NAP sing 264 n n C1B H1B NAP sing 265 n n N9A C8A NAP sing 266 n y N9A C4A NAP sing 267 n y C8A N7A NAP doub 268 n y C8A H8A NAP sing 269 n n N7A C5A NAP sing 270 n y C5A C6A NAP sing 271 n y C5A C4A NAP doub 272 n y C6A N6A NAP sing 273 n n C6A N1A NAP doub 274 n y N6A H61A NAP sing 275 n n N6A H62A NAP sing 276 n n N1A C2A NAP sing 277 n y C2A N3A NAP doub 278 n y C2A H2A NAP sing 279 n n N3A C4A NAP sing 280 n y O3 PN NAP sing 281 n n PN O1N NAP doub 282 n n PN O2N NAP sing 283 n n PN O5D NAP sing 284 n n O5D C5D NAP sing 285 n n C5D C4D NAP sing 286 n n C5D H51N NAP sing 287 n n C5D H52N NAP sing 288 n n C4D O4D NAP sing 289 n n C4D C3D NAP sing 290 n n C4D H4D NAP sing 291 n n O4D C1D NAP sing 292 n n C3D O3D NAP sing 293 n n C3D C2D NAP sing 294 n n C3D H3D NAP sing 295 n n O3D HO3N NAP sing 296 n n C2D O2D NAP sing 297 n n C2D C1D NAP sing 298 n n C2D H2D NAP sing 299 n n O2D HO2N NAP sing 300 n n C1D N1N NAP sing 301 n n C1D H1D NAP sing 302 n n N1N C2N NAP sing 303 n y N1N C6N NAP doub 304 n y C2N C3N NAP doub 305 n y C2N H2N NAP sing 306 n n C3N C7N NAP sing 307 n n C3N C4N NAP sing 308 n y C7N O7N NAP doub 309 n n C7N N7N NAP sing 310 n n N7N H71N NAP sing 311 n n N7N H72N NAP sing 312 n n C4N C5N NAP doub 313 n y C4N H4N NAP sing 314 n n C5N C6N NAP sing 315 n y C5N H5N NAP sing 316 n n C6N H6N NAP sing 317 n n P2B O1X NAP doub 318 n n P2B O2X NAP sing 319 n n P2B O3X NAP sing 320 n n O2X HOP2 NAP sing 321 n n O3X HOP3 NAP sing 322 n n # _atom_sites.entry_id 4Q6A _atom_sites.fract_transf_matrix[1][1] 0.012605 _atom_sites.fract_transf_matrix[1][2] 0.007278 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014555 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 207 NAP NAP . C 3 GOL A 1 202 221 GOL GOL . D 4 ACT A 1 203 701 ACT ACT . E 5 HOH A 1 301 1 HOH HOH . E 5 HOH A 2 302 2 HOH HOH . E 5 HOH A 3 303 3 HOH HOH . E 5 HOH A 4 304 4 HOH HOH . E 5 HOH A 5 305 5 HOH HOH . E 5 HOH A 6 306 6 HOH HOH . E 5 HOH A 7 307 7 HOH HOH . E 5 HOH A 8 308 8 HOH HOH . E 5 HOH A 9 309 9 HOH HOH . E 5 HOH A 10 310 10 HOH HOH . E 5 HOH A 11 311 11 HOH HOH . E 5 HOH A 12 312 12 HOH HOH . E 5 HOH A 13 313 13 HOH HOH . E 5 HOH A 14 314 14 HOH HOH . E 5 HOH A 15 315 15 HOH HOH . E 5 HOH A 16 316 16 HOH HOH . E 5 HOH A 17 317 17 HOH HOH . E 5 HOH A 18 318 18 HOH HOH . E 5 HOH A 19 319 19 HOH HOH . E 5 HOH A 20 320 20 HOH HOH . E 5 HOH A 21 321 21 HOH HOH . E 5 HOH A 22 322 22 HOH HOH . E 5 HOH A 23 323 23 HOH HOH . E 5 HOH A 24 324 24 HOH HOH . E 5 HOH A 25 325 25 HOH HOH . E 5 HOH A 26 326 26 HOH HOH . E 5 HOH A 27 327 27 HOH HOH . E 5 HOH A 28 328 28 HOH HOH . E 5 HOH A 29 329 29 HOH HOH . E 5 HOH A 30 330 30 HOH HOH . E 5 HOH A 31 331 31 HOH HOH . E 5 HOH A 32 332 32 HOH HOH . E 5 HOH A 33 333 33 HOH HOH . E 5 HOH A 34 334 34 HOH HOH . E 5 HOH A 35 335 35 HOH HOH . E 5 HOH A 36 336 36 HOH HOH . E 5 HOH A 37 337 37 HOH HOH . E 5 HOH A 38 338 38 HOH HOH . E 5 HOH A 39 339 39 HOH HOH . E 5 HOH A 40 340 40 HOH HOH . E 5 HOH A 41 341 41 HOH HOH . E 5 HOH A 42 342 42 HOH HOH . E 5 HOH A 43 343 43 HOH HOH . E 5 HOH A 44 344 44 HOH HOH . E 5 HOH A 45 345 45 HOH HOH . E 5 HOH A 46 346 46 HOH HOH . E 5 HOH A 47 347 47 HOH HOH . E 5 HOH A 48 348 48 HOH HOH . E 5 HOH A 49 349 49 HOH HOH . E 5 HOH A 50 350 50 HOH HOH . E 5 HOH A 51 351 51 HOH HOH . E 5 HOH A 52 352 52 HOH HOH . E 5 HOH A 53 353 53 HOH HOH . E 5 HOH A 54 354 54 HOH HOH . E 5 HOH A 55 355 55 HOH HOH . E 5 HOH A 56 356 56 HOH HOH . E 5 HOH A 57 357 57 HOH HOH . E 5 HOH A 58 358 58 HOH HOH . E 5 HOH A 59 359 59 HOH HOH . E 5 HOH A 60 360 60 HOH HOH . E 5 HOH A 61 361 61 HOH HOH . E 5 HOH A 62 362 62 HOH HOH . E 5 HOH A 63 363 63 HOH HOH . E 5 HOH A 64 364 64 HOH HOH . E 5 HOH A 65 365 65 HOH HOH . E 5 HOH A 66 366 66 HOH HOH . E 5 HOH A 67 367 67 HOH HOH . E 5 HOH A 68 368 68 HOH HOH . E 5 HOH A 69 369 69 HOH HOH . E 5 HOH A 70 370 70 HOH HOH . E 5 HOH A 71 371 71 HOH HOH . E 5 HOH A 72 372 72 HOH HOH . E 5 HOH A 73 373 73 HOH HOH . E 5 HOH A 74 374 74 HOH HOH . E 5 HOH A 75 375 75 HOH HOH . E 5 HOH A 76 376 76 HOH HOH . E 5 HOH A 77 377 77 HOH HOH . E 5 HOH A 78 378 78 HOH HOH . E 5 HOH A 79 379 79 HOH HOH . E 5 HOH A 80 380 80 HOH HOH . E 5 HOH A 81 381 81 HOH HOH . E 5 HOH A 82 382 82 HOH HOH . E 5 HOH A 83 383 83 HOH HOH . E 5 HOH A 84 384 84 HOH HOH . E 5 HOH A 85 385 85 HOH HOH . E 5 HOH A 86 386 86 HOH HOH . E 5 HOH A 87 387 87 HOH HOH . E 5 HOH A 88 388 88 HOH HOH . E 5 HOH A 89 389 89 HOH HOH . E 5 HOH A 90 390 90 HOH HOH . E 5 HOH A 91 391 91 HOH HOH . E 5 HOH A 92 392 92 HOH HOH . E 5 HOH A 93 393 93 HOH HOH . E 5 HOH A 94 394 94 HOH HOH . E 5 HOH A 95 395 95 HOH HOH . E 5 HOH A 96 396 96 HOH HOH . E 5 HOH A 97 397 97 HOH HOH . E 5 HOH A 98 398 98 HOH HOH . E 5 HOH A 99 399 99 HOH HOH . E 5 HOH A 100 400 100 HOH HOH . E 5 HOH A 101 401 101 HOH HOH . E 5 HOH A 102 402 102 HOH HOH . E 5 HOH A 103 403 103 HOH HOH . E 5 HOH A 104 404 104 HOH HOH . E 5 HOH A 105 405 105 HOH HOH . E 5 HOH A 106 406 106 HOH HOH . E 5 HOH A 107 407 107 HOH HOH . E 5 HOH A 108 408 108 HOH HOH . E 5 HOH A 109 409 109 HOH HOH . E 5 HOH A 110 410 110 HOH HOH . E 5 HOH A 111 411 111 HOH HOH . E 5 HOH A 112 412 112 HOH HOH . E 5 HOH A 113 413 113 HOH HOH . E 5 HOH A 114 414 114 HOH HOH . E 5 HOH A 115 415 115 HOH HOH . E 5 HOH A 116 416 116 HOH HOH . E 5 HOH A 117 417 117 HOH HOH . E 5 HOH A 118 418 118 HOH HOH . E 5 HOH A 119 419 119 HOH HOH . E 5 HOH A 120 420 120 HOH HOH . E 5 HOH A 121 421 121 HOH HOH . E 5 HOH A 122 422 122 HOH HOH . E 5 HOH A 123 423 123 HOH HOH . E 5 HOH A 124 424 124 HOH HOH . E 5 HOH A 125 425 125 HOH HOH . E 5 HOH A 126 426 126 HOH HOH . E 5 HOH A 127 427 127 HOH HOH . E 5 HOH A 128 428 128 HOH HOH . E 5 HOH A 129 429 129 HOH HOH . E 5 HOH A 130 430 130 HOH HOH . E 5 HOH A 131 431 131 HOH HOH . E 5 HOH A 132 432 132 HOH HOH . E 5 HOH A 133 433 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 6.688 -31.673 6.604 1 13.53 ? PA NAP 201 A 1 HETATM 2 O O1A NAP . . . B 2 6.805 -30.426 5.813 1 13.52 ? O1A NAP 201 A 1 HETATM 3 O O2A NAP . . . B 2 5.358 -32.31 6.504 1 16.02 ? O2A NAP 201 A 1 HETATM 4 O O5B NAP . . . B 2 7.851 -32.721 6.223 1 12.6 ? O5B NAP 201 A 1 HETATM 5 C C5B NAP . . . B 2 9.2 -32.352 6.377 1 13.41 ? C5B NAP 201 A 1 HETATM 6 C C4B NAP . . . B 2 9.985 -33.4 5.606 1 15.56 ? C4B NAP 201 A 1 HETATM 7 O O4B NAP . . . B 2 9.667 -33.295 4.23 1 14.29 ? O4B NAP 201 A 1 HETATM 8 C C3B NAP . . . B 2 11.495 -33.26 5.677 1 17.23 ? C3B NAP 201 A 1 HETATM 9 O O3B NAP . . . B 2 11.974 -33.824 6.874 1 10.89 ? O3B NAP 201 A 1 HETATM 10 C C2B NAP . . . B 2 11.876 -34.031 4.427 1 14.54 ? C2B NAP 201 A 1 HETATM 11 O O2B NAP . . . B 2 11.643 -35.404 4.627 1 18.47 ? O2B NAP 201 A 1 HETATM 12 C C1B NAP . . . B 2 10.801 -33.611 3.446 1 18.43 ? C1B NAP 201 A 1 HETATM 13 N N9A NAP . . . B 2 11.293 -32.441 2.699 1 12.73 ? N9A NAP 201 A 1 HETATM 14 C C8A NAP . . . B 2 10.893 -31.12 2.79 1 16.43 ? C8A NAP 201 A 1 HETATM 15 N N7A NAP . . . B 2 11.623 -30.396 1.898 1 18.39 ? N7A NAP 201 A 1 HETATM 16 C C5A NAP . . . B 2 12.489 -31.228 1.258 1 16.71 ? C5A NAP 201 A 1 HETATM 17 C C6A NAP . . . B 2 13.447 -31.022 0.268 1 22.17 ? C6A NAP 201 A 1 HETATM 18 N N6A NAP . . . B 2 13.685 -29.815 -0.245 1 21.08 ? N6A NAP 201 A 1 HETATM 19 N N1A NAP . . . B 2 14.166 -32.105 -0.188 1 19.09 ? N1A NAP 201 A 1 HETATM 20 C C2A NAP . . . B 2 13.943 -33.376 0.315 1 19.96 ? C2A NAP 201 A 1 HETATM 21 N N3A NAP . . . B 2 12.989 -33.58 1.284 1 13.56 ? N3A NAP 201 A 1 HETATM 22 C C4A NAP . . . B 2 12.276 -32.518 1.745 1 17.15 ? C4A NAP 201 A 1 HETATM 23 O O3 NAP . . . B 2 7.048 -31.349 8.134 1 14.88 ? O3 NAP 201 A 1 HETATM 24 P PN NAP . . . B 2 6.832 -30.094 9.112 1 13.64 ? PN NAP 201 A 1 HETATM 25 O O1N NAP . . . B 2 7.197 -30.583 10.463 1 13.62 ? O1N NAP 201 A 1 HETATM 26 O O2N NAP . . . B 2 7.522 -28.918 8.544 1 15.88 ? O2N NAP 201 A 1 HETATM 27 O O5D NAP . . . B 2 5.23 -29.862 9.068 1 13.2 ? O5D NAP 201 A 1 HETATM 28 C C5D NAP . . . B 2 4.389 -30.863 9.61 1 10.28 ? C5D NAP 201 A 1 HETATM 29 C C4D NAP . . . B 2 3.196 -30.222 10.3 1 17.02 ? C4D NAP 201 A 1 HETATM 30 O O4D NAP . . . B 2 2.412 -29.572 9.31 1 10.56 ? O4D NAP 201 A 1 HETATM 31 C C3D NAP . . . B 2 2.285 -31.24 10.986 1 12.29 ? C3D NAP 201 A 1 HETATM 32 O O3D NAP . . . B 2 1.928 -30.781 12.284 1 10.43 ? O3D NAP 201 A 1 HETATM 33 C C2D NAP . . . B 2 1.03 -31.268 10.141 1 7.99 ? C2D NAP 201 A 1 HETATM 34 O O2D NAP . . . B 2 -0.115 -31.484 10.927 1 13.42 ? O2D NAP 201 A 1 HETATM 35 C C1D NAP . . . B 2 1.048 -29.857 9.583 1 9.77 ? C1D NAP 201 A 1 HETATM 36 N N1N NAP . . . B 2 0.172 -29.698 8.407 1 10.39 ? N1N NAP 201 A 1 HETATM 37 C C2N NAP . . . B 2 -0.845 -28.782 8.516 1 10.34 ? C2N NAP 201 A 1 HETATM 38 C C3N NAP . . . B 2 -1.726 -28.568 7.471 1 13.79 ? C3N NAP 201 A 1 HETATM 39 C C7N NAP . . . B 2 -2.793 -27.537 7.65 1 9.94 ? C7N NAP 201 A 1 HETATM 40 O O7N NAP . . . B 2 -3.565 -27.196 6.538 1 9.74 ? O7N NAP 201 A 1 HETATM 41 N N7N NAP . . . B 2 -2.982 -26.963 8.851 1 10.77 ? N7N NAP 201 A 1 HETATM 42 C C4N NAP . . . B 2 -1.586 -29.288 6.278 1 15.12 ? C4N NAP 201 A 1 HETATM 43 C C5N NAP . . . B 2 -0.539 -30.212 6.173 1 12.99 ? C5N NAP 201 A 1 HETATM 44 C C6N NAP . . . B 2 0.335 -30.411 7.248 1 12.33 ? C6N NAP 201 A 1 HETATM 45 P P2B NAP . . . B 2 12.848 -36.376 5.101 1 16.07 ? P2B NAP 201 A 1 HETATM 46 O O1X NAP . . . B 2 13.248 -35.963 6.51 1 14.84 ? O1X NAP 201 A 1 HETATM 47 O O2X NAP . . . B 2 12.283 -37.774 5.064 1 14.57 ? O2X NAP 201 A 1 HETATM 48 O O3X NAP . . . B 2 13.99 -36.234 4.119 1 13.43 ? O3X NAP 201 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 48 #