data_4Q6F
#
_model_server_result.job_id            ncscyQbpvZTPi39NQRDPZA 
_model_server_result.datetime_utc      '2024-11-25 03:51:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4q6f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":1803}' 
#
_entry.id    4Q6F 
#
_exptl.entry_id    4Q6F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4Q6F 
_cell.length_a            71.866 
_cell.length_b            71.866 
_cell.length_c            98.767 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Q6F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA monomeric 1 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,H,I,J,S,W 1 1 
B,F,K,L,M,T 2 1 
C,G,N,O,U 3 1 
D,P,Q,R,V 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 M N N 
? 4 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 9 A CYS 1679 1_555 H ZN ZN . A ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc2 A SG CYS 12 A CYS 1682 1_555 H ZN ZN . A ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc3 A SG CYS 24 A CYS 1694 1_555 I ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc4 A SG CYS 27 A CYS 1697 1_555 I ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc5 A ND1 HIS 32 A HIS 1702 1_555 H ZN ZN . A ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc6 A SG CYS 35 A CYS 1705 1_555 H ZN ZN . A ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc7 A SG CYS 50 A CYS 1720 1_555 I ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc8 A SG CYS 53 A CYS 1723 1_555 I ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc9 B SG CYS 9 B CYS 1679 1_555 K ZN ZN . B ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc10 B SG CYS 12 B CYS 1682 1_555 K ZN ZN . B ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc11 B SG CYS 24 B CYS 1694 1_555 L ZN ZN . B ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc12 B SG CYS 27 B CYS 1697 1_555 L ZN ZN . B ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc13 B ND1 HIS 32 B HIS 1702 1_555 K ZN ZN . B ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc14 B SG CYS 35 B CYS 1705 1_555 K ZN ZN . B ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc15 B SG CYS 50 B CYS 1720 1_555 L ZN ZN . B ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc16 B SG CYS 53 B CYS 1723 1_555 L ZN ZN . B ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
metalc ? metalc17 C SG CYS 9 C CYS 1679 1_555 N ZN ZN . C ZN 1800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc18 C SG CYS 12 C CYS 1682 1_555 N ZN ZN . C ZN 1800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc19 C SG CYS 24 C CYS 1694 1_555 O ZN ZN . C ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc20 C SG CYS 27 C CYS 1697 1_555 O ZN ZN . C ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc21 C ND1 HIS 32 C HIS 1702 1_555 N ZN ZN . C ZN 1800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc22 C SG CYS 35 C CYS 1705 1_555 N ZN ZN . C ZN 1800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc23 C SG CYS 50 C CYS 1720 1_555 O ZN ZN . C ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc24 C SG CYS 53 C CYS 1723 1_555 O ZN ZN . C ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc25 D SG CYS 9 D CYS 1679 1_555 P ZN ZN . D ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc26 D SG CYS 12 D CYS 1682 1_555 P ZN ZN . D ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc27 D SG CYS 24 D CYS 1694 1_555 Q ZN ZN . D ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc28 D SG CYS 27 D CYS 1697 1_555 Q ZN ZN . D ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc29 D ND1 HIS 32 D HIS 1702 1_555 P ZN ZN . D ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc30 D SG CYS 35 D CYS 1705 1_555 P ZN ZN . D ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc31 D SG CYS 50 D CYS 1720 1_555 Q ZN ZN . D ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc32 D SG CYS 53 D CYS 1723 1_555 Q ZN ZN . D ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     4Q6F 
_atom_sites.fract_transf_matrix[1][1]    0.013915 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013915 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010125 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 3 ZN A 1 1801 1800 ZN ZN . 
I 3 ZN A 1 1802 1801 ZN ZN . 
J 4 EDO A 1 1803 2 EDO EDO . 
K 3 ZN B 1 1801 1800 ZN ZN . 
L 3 ZN B 1 1802 1801 ZN ZN . 
M 4 EDO B 1 1803 3 EDO EDO . 
N 3 ZN C 1 1800 1800 ZN ZN . 
O 3 ZN C 1 1801 1801 ZN ZN . 
P 3 ZN D 1 1801 1800 ZN ZN . 
Q 3 ZN D 1 1802 1801 ZN ZN . 
R 4 EDO D 1 1803 1 EDO EDO . 
S 5 HOH A 1 1901 2 HOH HOH . 
S 5 HOH A 2 1902 8 HOH HOH . 
S 5 HOH A 3 1903 16 HOH HOH . 
S 5 HOH A 4 1904 21 HOH HOH . 
S 5 HOH A 5 1905 23 HOH HOH . 
S 5 HOH A 6 1906 24 HOH HOH . 
S 5 HOH A 7 1907 25 HOH HOH . 
S 5 HOH A 8 1908 26 HOH HOH . 
S 5 HOH A 9 1909 27 HOH HOH . 
S 5 HOH A 10 1910 31 HOH HOH . 
S 5 HOH A 11 1911 33 HOH HOH . 
S 5 HOH A 12 1912 35 HOH HOH . 
S 5 HOH A 13 1913 47 HOH HOH . 
S 5 HOH A 14 1914 48 HOH HOH . 
S 5 HOH A 15 1915 49 HOH HOH . 
S 5 HOH A 16 1916 51 HOH HOH . 
S 5 HOH A 17 1917 55 HOH HOH . 
S 5 HOH A 18 1918 56 HOH HOH . 
S 5 HOH A 19 1919 60 HOH HOH . 
S 5 HOH A 20 1920 69 HOH HOH . 
T 5 HOH B 1 1901 3 HOH HOH . 
T 5 HOH B 2 1902 9 HOH HOH . 
T 5 HOH B 3 1903 10 HOH HOH . 
T 5 HOH B 4 1904 11 HOH HOH . 
T 5 HOH B 5 1905 13 HOH HOH . 
T 5 HOH B 6 1906 18 HOH HOH . 
T 5 HOH B 7 1907 29 HOH HOH . 
T 5 HOH B 8 1908 30 HOH HOH . 
T 5 HOH B 9 1909 32 HOH HOH . 
T 5 HOH B 10 1910 36 HOH HOH . 
T 5 HOH B 11 1911 37 HOH HOH . 
T 5 HOH B 12 1912 38 HOH HOH . 
T 5 HOH B 13 1913 53 HOH HOH . 
T 5 HOH B 14 1914 57 HOH HOH . 
T 5 HOH B 15 1915 59 HOH HOH . 
T 5 HOH B 16 1916 63 HOH HOH . 
T 5 HOH B 17 1917 64 HOH HOH . 
T 5 HOH B 18 1918 65 HOH HOH . 
U 5 HOH C 1 1901 4 HOH HOH . 
U 5 HOH C 2 1902 5 HOH HOH . 
U 5 HOH C 3 1903 17 HOH HOH . 
U 5 HOH C 4 1904 50 HOH HOH . 
U 5 HOH C 5 1905 54 HOH HOH . 
U 5 HOH C 6 1906 67 HOH HOH . 
U 5 HOH C 7 1907 70 HOH HOH . 
V 5 HOH D 1 1901 1 HOH HOH . 
V 5 HOH D 2 1902 6 HOH HOH . 
V 5 HOH D 3 1903 7 HOH HOH . 
V 5 HOH D 4 1904 12 HOH HOH . 
V 5 HOH D 5 1905 14 HOH HOH . 
V 5 HOH D 6 1906 15 HOH HOH . 
V 5 HOH D 7 1907 19 HOH HOH . 
V 5 HOH D 8 1908 20 HOH HOH . 
V 5 HOH D 9 1909 22 HOH HOH . 
V 5 HOH D 10 1910 34 HOH HOH . 
V 5 HOH D 11 1911 39 HOH HOH . 
V 5 HOH D 12 1912 40 HOH HOH . 
V 5 HOH D 13 1913 41 HOH HOH . 
V 5 HOH D 14 1914 42 HOH HOH . 
V 5 HOH D 15 1915 43 HOH HOH . 
V 5 HOH D 16 1916 44 HOH HOH . 
V 5 HOH D 17 1917 45 HOH HOH . 
V 5 HOH D 18 1918 46 HOH HOH . 
V 5 HOH D 19 1919 52 HOH HOH . 
V 5 HOH D 20 1920 61 HOH HOH . 
V 5 HOH D 21 1921 62 HOH HOH . 
V 5 HOH D 22 1922 66 HOH HOH . 
V 5 HOH D 23 1923 68 HOH HOH . 
W 5 HOH F 1 101 28 HOH HOH . 
W 5 HOH F 2 102 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . R 4 -7.295 -25.529 -40.199 1 40.11 ? C1 EDO 1803 D 1 
HETATM 2 O O1 EDO . . . R 4 -7.425 -24.177 -39.772 1 32.11 ? O1 EDO 1803 D 1 
HETATM 3 C C2 EDO . . . R 4 -6.665 -25.662 -41.592 1 38.25 ? C2 EDO 1803 D 1 
HETATM 4 O O2 EDO . . . R 4 -6.358 -24.395 -42.185 1 43.74 ? O2 EDO 1803 D 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#