data_4Q6G # _model_server_result.job_id vMaYiS6TONyPeDmrE11YFw _model_server_result.datetime_utc '2024-11-22 17:48:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q6g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4Q6G # _exptl.entry_id 4Q6G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4Q6G _cell.length_a 105.031 _cell.length_b 105.031 _cell.length_c 70.731 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q6G _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 41 n n PG O2G ANP sing 42 n n PG O3G ANP sing 43 n n PG N3B ANP sing 44 n n O2G HOG2 ANP sing 45 n n O3G HOG3 ANP sing 46 n n PB O1B ANP doub 47 n n PB O2B ANP sing 48 n n PB N3B ANP sing 49 n n PB O3A ANP sing 50 n n O2B HOB2 ANP sing 51 n n N3B HNB1 ANP sing 52 n n PA O1A ANP doub 53 n n PA O2A ANP sing 54 n n PA O3A ANP sing 55 n n PA O5' ANP sing 56 n n O2A HOA2 ANP sing 57 n n O5' C5' ANP sing 58 n n C5' C4' ANP sing 59 n n C5' "H5'1" ANP sing 60 n n C5' "H5'2" ANP sing 61 n n C4' O4' ANP sing 62 n n C4' C3' ANP sing 63 n n C4' H4' ANP sing 64 n n O4' C1' ANP sing 65 n n C3' O3' ANP sing 66 n n C3' C2' ANP sing 67 n n C3' H3' ANP sing 68 n n O3' HO3' ANP sing 69 n n C2' O2' ANP sing 70 n n C2' C1' ANP sing 71 n n C2' H2' ANP sing 72 n n O2' HO2' ANP sing 73 n n C1' N9 ANP sing 74 n n C1' H1' ANP sing 75 n n N9 C8 ANP sing 76 n y N9 C4 ANP sing 77 n y C8 N7 ANP doub 78 n y C8 H8 ANP sing 79 n n N7 C5 ANP sing 80 n y C5 C6 ANP sing 81 n y C5 C4 ANP doub 82 n y C6 N6 ANP sing 83 n n C6 N1 ANP doub 84 n y N6 HN61 ANP sing 85 n n N6 HN62 ANP sing 86 n n N1 C2 ANP sing 87 n y C2 N3 ANP doub 88 n y C2 H2 ANP sing 89 n n N3 C4 ANP sing 90 n y # _atom_sites.entry_id 4Q6G _atom_sites.fract_transf_matrix[1][1] 0.009521 _atom_sites.fract_transf_matrix[1][2] 0.005497 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010994 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014138 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 501 900 ANP ANP . C 3 EDO A 1 502 901 EDO EDO . D 3 EDO A 1 503 902 EDO EDO . E 3 EDO A 1 504 903 EDO EDO . F 3 EDO A 1 505 904 EDO EDO . G 3 EDO A 1 506 905 EDO EDO . H 3 EDO A 1 507 910 EDO EDO . I 4 ALY A 1 508 2005 ALY ALY . J 5 HOH A 1 601 1 HOH HOH . J 5 HOH A 2 602 2 HOH HOH . J 5 HOH A 3 603 3 HOH HOH . J 5 HOH A 4 604 4 HOH HOH . J 5 HOH A 5 605 5 HOH HOH . J 5 HOH A 6 606 7 HOH HOH . J 5 HOH A 7 607 8 HOH HOH . J 5 HOH A 8 608 9 HOH HOH . J 5 HOH A 9 609 10 HOH HOH . J 5 HOH A 10 610 11 HOH HOH . J 5 HOH A 11 611 12 HOH HOH . J 5 HOH A 12 612 13 HOH HOH . J 5 HOH A 13 613 14 HOH HOH . J 5 HOH A 14 614 15 HOH HOH . J 5 HOH A 15 615 16 HOH HOH . J 5 HOH A 16 616 18 HOH HOH . J 5 HOH A 17 617 20 HOH HOH . J 5 HOH A 18 618 21 HOH HOH . J 5 HOH A 19 619 22 HOH HOH . J 5 HOH A 20 620 24 HOH HOH . J 5 HOH A 21 621 26 HOH HOH . J 5 HOH A 22 622 28 HOH HOH . J 5 HOH A 23 623 29 HOH HOH . J 5 HOH A 24 624 30 HOH HOH . J 5 HOH A 25 625 31 HOH HOH . J 5 HOH A 26 626 34 HOH HOH . J 5 HOH A 27 627 36 HOH HOH . J 5 HOH A 28 628 38 HOH HOH . J 5 HOH A 29 629 39 HOH HOH . J 5 HOH A 30 630 40 HOH HOH . J 5 HOH A 31 631 41 HOH HOH . J 5 HOH A 32 632 42 HOH HOH . J 5 HOH A 33 633 43 HOH HOH . J 5 HOH A 34 634 44 HOH HOH . J 5 HOH A 35 635 47 HOH HOH . J 5 HOH A 36 636 48 HOH HOH . J 5 HOH A 37 637 50 HOH HOH . J 5 HOH A 38 638 51 HOH HOH . J 5 HOH A 39 639 56 HOH HOH . J 5 HOH A 40 640 57 HOH HOH . J 5 HOH A 41 641 58 HOH HOH . J 5 HOH A 42 642 59 HOH HOH . J 5 HOH A 43 643 60 HOH HOH . J 5 HOH A 44 644 62 HOH HOH . J 5 HOH A 45 645 66 HOH HOH . J 5 HOH A 46 646 67 HOH HOH . J 5 HOH A 47 647 69 HOH HOH . J 5 HOH A 48 648 70 HOH HOH . J 5 HOH A 49 649 71 HOH HOH . J 5 HOH A 50 650 73 HOH HOH . J 5 HOH A 51 651 74 HOH HOH . J 5 HOH A 52 652 76 HOH HOH . J 5 HOH A 53 653 77 HOH HOH . J 5 HOH A 54 654 78 HOH HOH . J 5 HOH A 55 655 81 HOH HOH . J 5 HOH A 56 656 83 HOH HOH . J 5 HOH A 57 657 86 HOH HOH . J 5 HOH A 58 658 88 HOH HOH . J 5 HOH A 59 659 89 HOH HOH . J 5 HOH A 60 660 90 HOH HOH . J 5 HOH A 61 661 92 HOH HOH . J 5 HOH A 62 662 94 HOH HOH . J 5 HOH A 63 663 102 HOH HOH . J 5 HOH A 64 664 103 HOH HOH . J 5 HOH A 65 665 114 HOH HOH . J 5 HOH A 66 666 119 HOH HOH . J 5 HOH A 67 667 120 HOH HOH . J 5 HOH A 68 668 121 HOH HOH . J 5 HOH A 69 669 126 HOH HOH . J 5 HOH A 70 670 130 HOH HOH . J 5 HOH A 71 671 136 HOH HOH . J 5 HOH A 72 672 139 HOH HOH . J 5 HOH A 73 673 153 HOH HOH . J 5 HOH A 74 674 154 HOH HOH . J 5 HOH A 75 675 167 HOH HOH . J 5 HOH A 76 676 185 HOH HOH . J 5 HOH A 77 677 188 HOH HOH . J 5 HOH A 78 678 189 HOH HOH . J 5 HOH A 79 679 191 HOH HOH . J 5 HOH A 80 680 192 HOH HOH . J 5 HOH A 81 681 199 HOH HOH . J 5 HOH A 82 682 207 HOH HOH . J 5 HOH A 83 683 215 HOH HOH . J 5 HOH A 84 684 219 HOH HOH . J 5 HOH A 85 685 222 HOH HOH . J 5 HOH A 86 686 239 HOH HOH . J 5 HOH A 87 687 244 HOH HOH . J 5 HOH A 88 688 249 HOH HOH . J 5 HOH A 89 689 253 HOH HOH . J 5 HOH A 90 690 261 HOH HOH . J 5 HOH A 91 691 274 HOH HOH . J 5 HOH A 92 692 290 HOH HOH . J 5 HOH A 93 693 291 HOH HOH . J 5 HOH A 94 694 292 HOH HOH . J 5 HOH A 95 695 326 HOH HOH . J 5 HOH A 96 696 358 HOH HOH . J 5 HOH A 97 697 366 HOH HOH . J 5 HOH A 98 698 375 HOH HOH . J 5 HOH A 99 699 383 HOH HOH . J 5 HOH A 100 700 389 HOH HOH . J 5 HOH A 101 701 393 HOH HOH . J 5 HOH A 102 702 395 HOH HOH . J 5 HOH A 103 703 402 HOH HOH . J 5 HOH A 104 704 404 HOH HOH . J 5 HOH A 105 705 405 HOH HOH . J 5 HOH A 106 706 409 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 9.438 34.351 36.606 1 125.43 ? PG ANP 501 A 1 HETATM 2 O O1G ANP . . . B 2 7.935 34.396 36.763 1 126.6 ? O1G ANP 501 A 1 HETATM 3 O O2G ANP . . . B 2 10.176 34.068 37.897 1 124.63 ? O2G ANP 501 A 1 HETATM 4 O O3G ANP . . . B 2 9.907 33.513 35.439 1 119.96 ? O3G ANP 501 A 1 HETATM 5 P PB ANP . . . B 2 8.963 37.343 36.776 1 112.98 ? PB ANP 501 A 1 HETATM 6 O O1B ANP . . . B 2 7.616 37.295 36.091 1 112.45 ? O1B ANP 501 A 1 HETATM 7 O O2B ANP . . . B 2 8.993 37.3 38.288 1 111.69 ? O2B ANP 501 A 1 HETATM 8 N N3B ANP . . . B 2 9.899 35.987 36.185 1 118.57 ? N3B ANP 501 A 1 HETATM 9 P PA ANP . . . B 2 9.148 39.787 35.309 1 96.25 ? PA ANP 501 A 1 HETATM 10 O O1A ANP . . . B 2 9.244 41.155 35.947 1 99.13 ? O1A ANP 501 A 1 HETATM 11 O O2A ANP . . . B 2 7.826 39.316 34.754 1 96.94 ? O2A ANP 501 A 1 HETATM 12 O O3A ANP . . . B 2 9.724 38.702 36.353 1 103.34 ? O3A ANP 501 A 1 HETATM 13 O O5' ANP . . . B 2 10.261 39.715 34.149 1 88.55 ? O5' ANP 501 A 1 HETATM 14 C C5' ANP . . . B 2 9.934 39.569 32.771 1 79 ? C5' ANP 501 A 1 HETATM 15 C C4' ANP . . . B 2 10.949 38.654 32.094 1 71.88 ? C4' ANP 501 A 1 HETATM 16 O O4' ANP . . . B 2 12.285 38.831 32.583 1 68.25 ? O4' ANP 501 A 1 HETATM 17 C C3' ANP . . . B 2 10.683 37.187 32.334 1 64.61 ? C3' ANP 501 A 1 HETATM 18 O O3' ANP . . . B 2 9.594 36.704 31.556 1 65.52 ? O3' ANP 501 A 1 HETATM 19 C C2' ANP . . . B 2 12.021 36.587 31.953 1 63.31 ? C2' ANP 501 A 1 HETATM 20 O O2' ANP . . . B 2 12.157 36.479 30.53 1 55.36 ? O2' ANP 501 A 1 HETATM 21 C C1' ANP . . . B 2 13.014 37.597 32.487 1 62.9 ? C1' ANP 501 A 1 HETATM 22 N N9 ANP . . . B 2 13.559 37.221 33.822 1 62.86 ? N9 ANP 501 A 1 HETATM 23 C C8 ANP . . . B 2 13.068 37.63 35.017 1 63.66 ? C8 ANP 501 A 1 HETATM 24 N N7 ANP . . . B 2 13.795 37.126 36.047 1 61.09 ? N7 ANP 501 A 1 HETATM 25 C C5 ANP . . . B 2 14.778 36.38 35.512 1 60.22 ? C5 ANP 501 A 1 HETATM 26 C C6 ANP . . . B 2 15.9 35.569 36.043 1 57.33 ? C6 ANP 501 A 1 HETATM 27 N N6 ANP . . . B 2 16.103 35.467 37.383 1 54.91 ? N6 ANP 501 A 1 HETATM 28 N N1 ANP . . . B 2 16.698 34.944 35.142 1 56.26 ? N1 ANP 501 A 1 HETATM 29 C C2 ANP . . . B 2 16.505 35.039 33.808 1 54.79 ? C2 ANP 501 A 1 HETATM 30 N N3 ANP . . . B 2 15.508 35.759 33.262 1 55.43 ? N3 ANP 501 A 1 HETATM 31 C C4 ANP . . . B 2 14.627 36.444 34.044 1 60.48 ? C4 ANP 501 A 1 # _model_server_stats.io_time_ms 111 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #