data_4Q6G # _model_server_result.job_id VEc7_U8Y3bR3dlBDpx0Yfw _model_server_result.datetime_utc '2024-11-26 03:16:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q6g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":508}' # _entry.id 4Q6G # _exptl.entry_id 4Q6G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 188.224 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N(6)-ACETYLLYSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4Q6G _cell.length_a 105.031 _cell.length_b 105.031 _cell.length_c 70.731 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q6G _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H16 N2 O3' _chem_comp.formula_weight 188.224 _chem_comp.id ALY _chem_comp.mon_nstd_flag n _chem_comp.name N(6)-ACETYLLYSINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH CH ALY doub 13 n n CH CH3 ALY sing 14 n n CH NZ ALY sing 15 n n CH3 HH31 ALY sing 16 n n CH3 HH32 ALY sing 17 n n CH3 HH33 ALY sing 18 n n NZ CE ALY sing 19 n n NZ HZ ALY sing 20 n n CE CD ALY sing 21 n n CE HE3 ALY sing 22 n n CE HE2 ALY sing 23 n n CD CG ALY sing 24 n n CD HD3 ALY sing 25 n n CD HD2 ALY sing 26 n n CG CB ALY sing 27 n n CG HG3 ALY sing 28 n n CG HG2 ALY sing 29 n n CB CA ALY sing 30 n n CB HB3 ALY sing 31 n n CB HB2 ALY sing 32 n n CA N ALY sing 33 n n CA C ALY sing 34 n n CA HA ALY sing 35 n n N H ALY sing 36 n n N H2 ALY sing 37 n n C O ALY doub 38 n n C OXT ALY sing 39 n n OXT HXT ALY sing 40 n n # _atom_sites.entry_id 4Q6G _atom_sites.fract_transf_matrix[1][1] 0.009521 _atom_sites.fract_transf_matrix[1][2] 0.005497 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010994 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014138 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 501 900 ANP ANP . C 3 EDO A 1 502 901 EDO EDO . D 3 EDO A 1 503 902 EDO EDO . E 3 EDO A 1 504 903 EDO EDO . F 3 EDO A 1 505 904 EDO EDO . G 3 EDO A 1 506 905 EDO EDO . H 3 EDO A 1 507 910 EDO EDO . I 4 ALY A 1 508 2005 ALY ALY . J 5 HOH A 1 601 1 HOH HOH . J 5 HOH A 2 602 2 HOH HOH . J 5 HOH A 3 603 3 HOH HOH . J 5 HOH A 4 604 4 HOH HOH . J 5 HOH A 5 605 5 HOH HOH . J 5 HOH A 6 606 7 HOH HOH . J 5 HOH A 7 607 8 HOH HOH . J 5 HOH A 8 608 9 HOH HOH . J 5 HOH A 9 609 10 HOH HOH . J 5 HOH A 10 610 11 HOH HOH . J 5 HOH A 11 611 12 HOH HOH . J 5 HOH A 12 612 13 HOH HOH . J 5 HOH A 13 613 14 HOH HOH . J 5 HOH A 14 614 15 HOH HOH . J 5 HOH A 15 615 16 HOH HOH . J 5 HOH A 16 616 18 HOH HOH . J 5 HOH A 17 617 20 HOH HOH . J 5 HOH A 18 618 21 HOH HOH . J 5 HOH A 19 619 22 HOH HOH . J 5 HOH A 20 620 24 HOH HOH . J 5 HOH A 21 621 26 HOH HOH . J 5 HOH A 22 622 28 HOH HOH . J 5 HOH A 23 623 29 HOH HOH . J 5 HOH A 24 624 30 HOH HOH . J 5 HOH A 25 625 31 HOH HOH . J 5 HOH A 26 626 34 HOH HOH . J 5 HOH A 27 627 36 HOH HOH . J 5 HOH A 28 628 38 HOH HOH . J 5 HOH A 29 629 39 HOH HOH . J 5 HOH A 30 630 40 HOH HOH . J 5 HOH A 31 631 41 HOH HOH . J 5 HOH A 32 632 42 HOH HOH . J 5 HOH A 33 633 43 HOH HOH . J 5 HOH A 34 634 44 HOH HOH . J 5 HOH A 35 635 47 HOH HOH . J 5 HOH A 36 636 48 HOH HOH . J 5 HOH A 37 637 50 HOH HOH . J 5 HOH A 38 638 51 HOH HOH . J 5 HOH A 39 639 56 HOH HOH . J 5 HOH A 40 640 57 HOH HOH . J 5 HOH A 41 641 58 HOH HOH . J 5 HOH A 42 642 59 HOH HOH . J 5 HOH A 43 643 60 HOH HOH . J 5 HOH A 44 644 62 HOH HOH . J 5 HOH A 45 645 66 HOH HOH . J 5 HOH A 46 646 67 HOH HOH . J 5 HOH A 47 647 69 HOH HOH . J 5 HOH A 48 648 70 HOH HOH . J 5 HOH A 49 649 71 HOH HOH . J 5 HOH A 50 650 73 HOH HOH . J 5 HOH A 51 651 74 HOH HOH . J 5 HOH A 52 652 76 HOH HOH . J 5 HOH A 53 653 77 HOH HOH . J 5 HOH A 54 654 78 HOH HOH . J 5 HOH A 55 655 81 HOH HOH . J 5 HOH A 56 656 83 HOH HOH . J 5 HOH A 57 657 86 HOH HOH . J 5 HOH A 58 658 88 HOH HOH . J 5 HOH A 59 659 89 HOH HOH . J 5 HOH A 60 660 90 HOH HOH . J 5 HOH A 61 661 92 HOH HOH . J 5 HOH A 62 662 94 HOH HOH . J 5 HOH A 63 663 102 HOH HOH . J 5 HOH A 64 664 103 HOH HOH . J 5 HOH A 65 665 114 HOH HOH . J 5 HOH A 66 666 119 HOH HOH . J 5 HOH A 67 667 120 HOH HOH . J 5 HOH A 68 668 121 HOH HOH . J 5 HOH A 69 669 126 HOH HOH . J 5 HOH A 70 670 130 HOH HOH . J 5 HOH A 71 671 136 HOH HOH . J 5 HOH A 72 672 139 HOH HOH . J 5 HOH A 73 673 153 HOH HOH . J 5 HOH A 74 674 154 HOH HOH . J 5 HOH A 75 675 167 HOH HOH . J 5 HOH A 76 676 185 HOH HOH . J 5 HOH A 77 677 188 HOH HOH . J 5 HOH A 78 678 189 HOH HOH . J 5 HOH A 79 679 191 HOH HOH . J 5 HOH A 80 680 192 HOH HOH . J 5 HOH A 81 681 199 HOH HOH . J 5 HOH A 82 682 207 HOH HOH . J 5 HOH A 83 683 215 HOH HOH . J 5 HOH A 84 684 219 HOH HOH . J 5 HOH A 85 685 222 HOH HOH . J 5 HOH A 86 686 239 HOH HOH . J 5 HOH A 87 687 244 HOH HOH . J 5 HOH A 88 688 249 HOH HOH . J 5 HOH A 89 689 253 HOH HOH . J 5 HOH A 90 690 261 HOH HOH . J 5 HOH A 91 691 274 HOH HOH . J 5 HOH A 92 692 290 HOH HOH . J 5 HOH A 93 693 291 HOH HOH . J 5 HOH A 94 694 292 HOH HOH . J 5 HOH A 95 695 326 HOH HOH . J 5 HOH A 96 696 358 HOH HOH . J 5 HOH A 97 697 366 HOH HOH . J 5 HOH A 98 698 375 HOH HOH . J 5 HOH A 99 699 383 HOH HOH . J 5 HOH A 100 700 389 HOH HOH . J 5 HOH A 101 701 393 HOH HOH . J 5 HOH A 102 702 395 HOH HOH . J 5 HOH A 103 703 402 HOH HOH . J 5 HOH A 104 704 404 HOH HOH . J 5 HOH A 105 705 405 HOH HOH . J 5 HOH A 106 706 409 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH ALY . . . I 4 7.316 49.177 30.888 0.6 68.81 ? OH ALY 508 A 1 HETATM 2 C CH ALY . . . I 4 8.4 48.638 30.977 0.6 68.5 ? CH ALY 508 A 1 HETATM 3 C CH3 ALY . . . I 4 9.231 48.354 29.753 0.6 68.02 ? CH3 ALY 508 A 1 HETATM 4 N NZ ALY . . . I 4 8.879 48.282 32.167 0.6 69.17 ? NZ ALY 508 A 1 HETATM 5 C CE ALY . . . I 4 10.162 47.63 32.313 0.6 70.12 ? CE ALY 508 A 1 HETATM 6 C CD ALY . . . I 4 10.165 46.583 33.417 0.6 69.21 ? CD ALY 508 A 1 HETATM 7 C CG ALY . . . I 4 11.525 45.948 33.424 0.6 65.53 ? CG ALY 508 A 1 HETATM 8 C CB ALY . . . I 4 11.489 44.549 34.004 0.6 65.55 ? CB ALY 508 A 1 HETATM 9 C CA ALY . . . I 4 12.929 44.072 34.047 0.6 63.45 ? CA ALY 508 A 1 HETATM 10 N N ALY . . . I 4 13.554 44.271 32.714 0.6 61.28 ? N ALY 508 A 1 HETATM 11 C C ALY . . . I 4 13.019 42.655 34.54 0.6 62.74 ? C ALY 508 A 1 HETATM 12 O O ALY . . . I 4 12.098 41.851 34.416 0.6 68.52 ? O ALY 508 A 1 HETATM 13 O OXT ALY . . . I 4 14.031 42.269 35.11 0.6 59.08 ? OXT ALY 508 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #